Wall clock time and date at job start Sat Apr 11 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46042 * 2 1 4 4 C 1.53043 * 109.46385 * 240.01945 * 2 1 3 5 5 H 1.09004 * 109.49964 * 60.82273 * 4 2 1 6 6 N 1.46499 * 109.50333 * 300.74684 * 4 2 1 7 7 C 1.34781 * 119.99966 * 154.99828 * 6 4 2 8 8 O 1.21274 * 119.99672 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99869 * 180.02562 * 7 6 4 10 10 S 1.80999 * 109.46953 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99996 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99880 * 0.02562 * 11 10 9 13 13 C 1.38801 * 119.99721 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00428 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99493 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47393 * 60.00304 * 15 13 11 17 17 H 1.48509 * 109.46995 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47205 * 299.99825 * 15 13 11 19 19 C 1.53120 * 109.27777 * 180.80574 * 4 2 1 20 20 C 1.53114 * 109.16118 * 57.65586 * 19 4 2 21 21 C 1.53037 * 109.27855 * 302.34674 * 20 19 4 22 22 N 1.46843 * 109.52773 * 59.17811 * 21 20 19 23 23 C 1.46896 * 111.00327 * 174.16185 * 22 21 20 24 24 C 1.53004 * 109.46959 * 308.19412 * 23 22 21 25 25 C 1.54268 * 110.03273 * 295.65634 * 24 23 22 26 26 C 1.54963 * 104.16180 * 217.13889 * 25 24 23 27 27 C 1.54890 * 102.77904 * 37.88876 * 26 25 24 28 28 C 1.53879 * 110.02883 * 178.44251 * 24 23 22 29 29 H 1.09002 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47422 * 299.97605 * 1 2 3 31 31 H 1.09005 * 109.47250 * 59.97893 * 1 2 3 32 32 H 0.97003 * 120.00219 * 335.00290 * 6 4 2 33 33 H 1.09001 * 109.47538 * 60.00183 * 9 7 6 34 34 H 1.09005 * 109.47300 * 300.00108 * 9 7 6 35 35 H 0.96999 * 120.00028 * 359.97438 * 14 13 11 36 36 H 1.09001 * 109.52102 * 177.56147 * 19 4 2 37 37 H 1.08996 * 109.52029 * 297.75033 * 19 4 2 38 38 H 1.09002 * 109.50465 * 182.40323 * 20 19 4 39 39 H 1.09003 * 109.53790 * 62.30241 * 20 19 4 40 40 H 1.09004 * 109.46094 * 299.15838 * 21 20 19 41 41 H 1.09004 * 109.46325 * 179.20029 * 21 20 19 42 42 H 1.08997 * 109.47278 * 68.19162 * 23 22 21 43 43 H 1.09000 * 109.47158 * 188.19278 * 23 22 21 44 44 H 1.08999 * 110.01443 * 57.05132 * 24 23 22 45 45 H 1.09004 * 110.48684 * 335.78984 * 25 24 23 46 46 H 1.09006 * 110.48386 * 98.42535 * 25 24 23 47 47 H 1.08997 * 110.71803 * 279.57465 * 26 25 24 48 48 H 1.08995 * 110.92233 * 156.29802 * 26 25 24 49 49 H 1.08998 * 110.48992 * 203.41111 * 27 26 25 50 50 H 1.08998 * 110.59607 * 80.81476 * 27 26 25 51 51 H 1.09000 * 110.02593 * 238.56812 * 28 24 23 52 52 H 1.08995 * 110.03202 * 359.94988 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 1 1.6889 -0.1988 -2.1399 6 7 1.5373 -2.0971 -1.2600 7 6 1.4088 -2.7590 -2.4271 8 8 1.7089 -2.2153 -3.4687 9 6 0.8912 -4.1742 -2.4375 10 16 0.8338 -4.7830 -4.1411 11 6 0.2121 -6.4084 -3.8644 12 1 -0.0069 -6.7390 -2.8599 13 6 0.0028 -7.2633 -4.9377 14 7 0.2693 -6.8602 -6.1620 15 14 -0.6570 -8.9862 -4.6443 16 1 -1.9864 -8.9021 -3.9882 17 1 -0.7895 -9.6933 -5.9435 18 1 0.2811 -9.7330 -3.7683 19 6 3.5710 -0.7362 -1.2355 20 6 4.0548 -1.4188 0.0469 21 6 3.4864 -0.6776 1.2591 22 7 2.0192 -0.6916 1.1995 23 6 1.4372 -0.1103 2.4165 24 6 2.0442 -0.7887 3.6463 25 6 1.6558 -2.2815 3.6720 26 6 1.4322 -2.5892 5.1743 27 6 0.7546 -1.2961 5.6917 28 6 1.4718 -0.1623 4.9300 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8901 31 1 -0.3634 0.5142 -0.8898 32 1 1.2968 -2.5318 -0.4269 33 1 -0.1111 -4.1978 -2.0098 34 1 1.5532 -4.8077 -1.8470 35 1 0.6115 -5.9655 -6.3143 36 1 3.9380 -1.2865 -2.1018 37 1 3.9456 0.2868 -1.2672 38 1 5.1439 -1.3947 0.0834 39 1 3.7130 -2.4538 0.0601 40 1 3.8403 0.3534 1.2532 41 1 3.8174 -1.1697 2.1737 42 1 1.6521 0.9578 2.4477 43 1 0.3581 -0.2639 2.4123 44 1 3.1291 -0.6853 3.6320 45 1 0.7376 -2.4466 3.1082 46 1 2.4649 -2.8931 3.2728 47 1 2.3835 -2.7556 5.6795 48 1 0.7733 -3.4481 5.3018 49 1 0.9063 -1.1894 6.7658 50 1 -0.3096 -1.3002 5.4561 51 1 2.2792 0.2442 5.5391 52 1 0.7624 0.6255 4.6769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486163528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:51 Heat of formation + Delta-G solvation = -81.143768 kcal Electronic energy + Delta-G solvation = -28492.188492 eV Core-core repulsion = 24808.460446 eV Total energy + Delta-G solvation = -3683.728045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50101 -40.05848 -38.63481 -35.60747 -34.73818 -34.18201 -32.86986 -30.85018 -29.85144 -29.35847 -27.85252 -27.04964 -26.08541 -23.62373 -22.62602 -21.98769 -21.40915 -20.46026 -20.38507 -19.97013 -18.13756 -17.40607 -17.22437 -16.68255 -16.50444 -16.04473 -15.93645 -15.72616 -15.67822 -15.28117 -15.11001 -14.71283 -14.54697 -14.43759 -14.18573 -14.08838 -13.86642 -13.72403 -13.53085 -12.96022 -12.93995 -12.83459 -12.72925 -12.40517 -11.95554 -11.94905 -11.89591 -11.87702 -11.82728 -11.66542 -11.55702 -11.53133 -11.38801 -11.26686 -11.08934 -10.95841 -10.91308 -10.31375 -10.04030 -9.22164 -8.91840 -8.85369 -6.26353 1.22867 1.52557 1.58754 1.61277 1.81374 2.25589 2.36394 2.85008 3.02982 3.16333 3.59691 3.71480 3.78828 3.82606 3.89352 3.94435 4.01755 4.12175 4.18267 4.30102 4.34702 4.39139 4.39651 4.52504 4.53344 4.59264 4.67078 4.68016 4.76111 4.77905 4.80708 4.87491 4.90663 4.95455 5.00791 5.03057 5.04712 5.13479 5.19168 5.22283 5.26405 5.31618 5.36057 5.46848 5.53569 5.55688 5.62273 5.64944 6.13949 6.15656 6.18391 6.56086 7.07160 7.25626 8.51654 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.002619 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.674951 B =10690.051784 C =12043.514235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.087 3.913 3 H 0.064 0.936 4 C 0.156 3.844 5 H 0.068 0.932 6 N -0.689 5.689 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.108 4.108 10 S -0.193 6.193 11 C -0.613 4.613 12 H 0.073 0.927 13 C -0.020 4.020 14 N -0.913 5.913 15 Si 1.136 2.864 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.263 1.263 19 C -0.131 4.131 20 C -0.111 4.111 21 C 0.057 3.943 22 N -0.535 5.535 23 C 0.066 3.934 24 C -0.090 4.090 25 C -0.105 4.105 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.416 0.584 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.260 0.740 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 16.455 28.073 32.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 H 0.082 0.918 4 C 0.051 3.949 5 H 0.086 0.914 6 N -0.343 5.343 7 C 0.319 3.681 8 O -0.447 6.447 9 C -0.259 4.259 10 S 0.034 5.966 11 C -0.761 4.761 12 H 0.092 0.908 13 C -0.223 4.223 14 N -0.549 5.549 15 Si 0.954 3.046 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.070 4.070 22 N -0.260 5.260 23 C -0.061 4.061 24 C -0.108 4.108 25 C -0.143 4.143 26 C -0.168 4.168 27 C -0.161 4.161 28 C -0.155 4.155 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.254 0.746 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.054 0.946 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.774 15.545 25.586 30.175 hybrid contribution 0.366 1.378 1.693 2.214 sum 4.140 16.923 27.279 32.368 Atomic orbital electron populations 1.21880 0.93421 1.02629 1.02400 1.21747 0.96072 0.95532 0.88837 0.91843 1.21020 0.93801 0.82037 0.98065 0.91361 1.45645 1.65893 1.14729 1.08005 1.19942 0.77097 0.86972 0.84111 1.90675 1.51145 1.69256 1.33610 1.23201 1.05381 0.96425 1.00925 1.85015 1.86535 1.16569 1.08517 1.24034 1.53671 0.99532 0.98843 0.90828 1.27840 0.94297 1.09003 0.91129 1.70915 1.41056 1.20520 1.22365 0.82724 0.76976 0.68509 0.76407 1.18770 1.20502 1.18814 1.21946 0.95000 1.01666 0.98397 1.21513 1.00361 0.99689 0.93293 1.22171 0.86963 0.99108 0.98755 1.61875 1.07459 1.55119 1.01586 1.22307 0.99814 0.95979 0.88044 1.21879 1.00115 0.95312 0.93532 1.22257 1.01214 0.95135 0.95664 1.22553 1.00424 0.97647 0.96131 1.22342 0.99529 0.94559 0.99686 1.22157 0.99935 0.97951 0.95500 0.92399 0.90629 0.92581 0.74621 0.87475 0.87595 0.92892 0.94119 0.89990 0.90639 0.92354 0.94299 0.89026 0.94555 0.90097 0.90709 0.91969 0.92419 0.91710 0.92018 0.91495 0.91866 0.91508 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.60 71.98 0.62 -1.70 16 2 C 0.09 1.40 2.15 44.94 0.10 1.50 16 3 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 4 C 0.16 3.59 2.26 45.05 0.10 3.69 16 5 H 0.07 1.90 7.58 -2.39 -0.02 1.89 16 6 N -0.69 -18.22 3.70 -442.28 -1.64 -19.85 16 7 C 0.53 20.04 7.82 87.66 0.69 20.73 16 8 O -0.57 -26.42 15.52 -3.01 -0.05 -26.47 16 9 C -0.11 -4.42 6.16 71.23 0.44 -3.98 16 10 S -0.19 -10.83 19.60 -56.49 -1.11 -11.94 16 11 C -0.61 -35.93 9.50 67.95 0.65 -35.29 16 12 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 13 C -0.02 -1.16 5.49 84.86 0.47 -0.69 16 14 N -0.91 -58.76 13.67 21.65 0.30 -58.46 16 15 Si 1.14 49.87 29.92 68.60 2.05 51.92 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 19 C -0.13 -2.87 5.67 30.67 0.17 -2.70 16 20 C -0.11 -1.95 5.92 30.64 0.18 -1.77 16 21 C 0.06 0.77 5.05 86.33 0.44 1.21 16 22 N -0.53 -7.37 3.81 -871.11 -3.32 -10.69 16 23 C 0.07 0.73 3.49 86.31 0.30 1.04 16 24 C -0.09 -0.94 2.43 -10.07 -0.02 -0.96 16 25 C -0.11 -1.33 6.11 31.70 0.19 -1.14 16 26 C -0.13 -1.51 6.91 31.91 0.22 -1.29 16 27 C -0.12 -1.25 6.83 31.67 0.22 -1.03 16 28 C -0.12 -1.09 6.46 31.32 0.20 -0.88 16 29 H 0.06 1.05 7.40 -2.39 -0.02 1.03 16 30 H 0.07 0.94 6.41 -2.39 -0.02 0.92 16 31 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.42 9.34 7.92 -92.71 -0.73 8.60 16 33 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 34 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 35 H 0.26 17.42 7.12 -92.71 -0.66 16.76 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.21 7.73 -2.39 -0.02 1.19 16 40 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.09 1.09 5.78 -2.38 -0.01 1.08 16 42 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 0.94 6.40 -2.39 -0.02 0.93 16 44 H 0.07 0.78 6.05 -2.39 -0.01 0.77 16 45 H 0.06 0.91 7.82 -2.38 -0.02 0.89 16 46 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.07 0.58 7.67 -2.39 -0.02 0.56 16 Total: -1.00 -74.28 406.18 1.45 -72.83 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.26 Total: 25.94 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.95 Total: -23.28 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -4.66 Total: -89.01 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.11 Total: -11.94 kcal Total: -74.28 1.45 -72.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486163528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.315 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds