Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50701 * 119.99985 * 2 1 4 4 C 1.30997 * 120.00450 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99767 * 7.79414 * 4 2 1 6 6 N 1.46903 * 109.46721 * 236.80668 * 5 4 2 7 7 C 1.46841 * 111.00594 * 45.78729 * 6 5 4 8 8 C 1.53035 * 109.52754 * 185.83780 * 7 6 5 9 9 C 1.53120 * 109.27835 * 300.81984 * 8 7 6 10 10 C 1.52996 * 109.51963 * 177.55728 * 9 8 7 11 11 H 1.08995 * 109.47285 * 60.00478 * 10 9 8 12 12 C 1.53003 * 109.47259 * 299.99803 * 10 9 8 13 13 N 1.46500 * 109.47019 * 180.02562 * 10 9 8 14 14 C 1.34777 * 120.00338 * 205.00437 * 13 10 9 15 15 O 1.21281 * 119.99721 * 359.97438 * 14 13 10 16 16 C 1.50693 * 120.00448 * 179.97438 * 14 13 10 17 17 S 1.81004 * 109.47299 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99793 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00368 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99840 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99811 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47071 * 60.00077 * 22 20 18 24 24 H 1.48501 * 109.46861 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46979 * 299.99922 * 22 20 18 26 26 C 1.53119 * 109.15706 * 57.65466 * 9 8 7 27 27 C 1.46852 * 110.99672 * 170.00056 * 6 5 4 28 28 H 1.08997 * 109.46527 * 185.51198 * 1 2 3 29 29 H 1.09001 * 109.46950 * 305.50776 * 1 2 3 30 30 H 1.08998 * 109.46999 * 65.51528 * 1 2 3 31 31 H 1.09007 * 109.47105 * 270.00054 * 3 2 1 32 32 H 1.09004 * 109.47206 * 29.99456 * 3 2 1 33 33 H 1.08998 * 109.47341 * 150.00233 * 3 2 1 34 34 H 1.07999 * 120.00636 * 187.79037 * 4 2 1 35 35 H 1.08992 * 109.47625 * 116.80551 * 5 4 2 36 36 H 1.09005 * 109.46901 * 356.80028 * 5 4 2 37 37 H 1.09006 * 109.46091 * 65.81869 * 7 6 5 38 38 H 1.09005 * 109.46351 * 305.86263 * 7 6 5 39 39 H 1.08997 * 109.50202 * 180.88174 * 8 7 6 40 40 H 1.08995 * 109.49935 * 60.76601 * 8 7 6 41 41 H 1.08997 * 109.52432 * 297.75197 * 9 8 7 42 42 H 1.09009 * 109.46759 * 179.97438 * 12 10 9 43 43 H 1.08995 * 109.47523 * 300.00530 * 12 10 9 44 44 H 1.09003 * 109.46657 * 60.00617 * 12 10 9 45 45 H 0.97000 * 120.00263 * 24.99638 * 13 10 9 46 46 H 1.09001 * 109.47457 * 299.99587 * 16 14 13 47 47 H 1.09004 * 109.47037 * 59.99510 * 16 14 13 48 48 H 0.97008 * 120.00219 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.50813 * 62.28682 * 26 9 8 50 50 H 1.08999 * 109.50306 * 182.36228 * 26 9 8 51 51 H 1.08993 * 109.46251 * 54.14289 * 27 6 5 52 52 H 1.09002 * 109.45102 * 294.16480 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4191 -2.4336 -0.1759 6 7 1.6952 -3.3146 0.9667 7 6 1.5856 -2.5821 2.2347 8 6 2.0198 -3.4889 3.3885 9 6 1.1273 -4.7328 3.4173 10 6 1.5953 -5.6720 4.5307 11 1 1.5326 -5.1582 5.4898 12 6 3.0438 -6.0904 4.2698 13 7 0.7411 -6.8620 4.5569 14 6 0.6059 -7.5695 5.6960 15 8 1.1917 -7.2213 6.6992 16 6 -0.2732 -8.7931 5.7232 17 16 -0.2476 -9.5179 7.3816 18 6 -1.3250 -10.8896 7.1327 19 1 -1.7692 -11.0584 6.1629 20 6 -1.6029 -11.7534 8.1831 21 7 -1.0619 -11.5474 9.3652 22 14 -2.7457 -13.2073 7.9195 23 1 -2.1864 -14.0919 6.8661 24 1 -2.8781 -13.9690 9.1874 25 1 -4.0817 -12.7163 7.4957 26 6 1.2225 -5.4509 2.0683 27 6 0.8113 -4.4873 0.9527 28 1 -0.3632 -1.0229 0.0987 29 1 -0.3633 0.5969 0.8366 30 1 -0.3633 0.4259 -0.9352 31 1 2.4422 1.6198 -1.0277 32 1 1.6714 2.0648 0.5138 33 1 3.2129 1.1748 0.5138 34 1 3.2346 -1.1387 0.1273 35 1 1.7471 -2.9178 -1.0956 36 1 0.3486 -2.2353 -0.2314 37 1 0.5519 -2.2712 2.3863 38 1 2.2282 -1.7022 2.2026 39 1 1.9234 -2.9500 4.3309 40 1 3.0578 -3.7889 3.2446 41 1 0.0946 -4.4360 3.5999 42 1 3.3773 -6.7592 5.0634 43 1 3.1065 -6.6042 3.3107 44 1 3.6796 -5.2052 4.2501 45 1 0.2728 -7.1406 3.7545 46 1 -1.2943 -8.5128 5.4646 47 1 0.0968 -9.5225 5.0025 48 1 -1.2558 -12.1512 10.0993 49 1 2.2479 -5.7819 1.9036 50 1 0.5570 -6.3141 2.0678 51 1 0.8917 -4.9911 -0.0104 52 1 -0.2187 -4.1673 1.1105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486443594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -52.895873 kcal Electronic energy + Delta-G solvation = -27164.510272 eV Core-core repulsion = 23482.007147 eV Total energy + Delta-G solvation = -3682.503125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18269 -40.09237 -38.09756 -36.36094 -34.58345 -33.98727 -31.86708 -31.70336 -29.91910 -29.06653 -28.57641 -27.65640 -26.20971 -24.35500 -23.89463 -22.28419 -21.46108 -20.14543 -19.78215 -18.66647 -17.91658 -17.43173 -16.93302 -16.87244 -16.43074 -16.17239 -15.98558 -15.81948 -15.61849 -15.06523 -14.90432 -14.72705 -14.66346 -14.54489 -14.13103 -14.01592 -13.71740 -13.43264 -13.20045 -13.17674 -13.16795 -13.03245 -12.86516 -12.82400 -12.61916 -12.57061 -12.46711 -12.26840 -11.86399 -11.81119 -11.73528 -11.51659 -11.27486 -11.12613 -11.10087 -10.86357 -10.27491 -10.08568 -9.61353 -9.13987 -8.66374 -8.34088 -6.12368 1.22463 1.27434 1.44122 1.47254 1.57150 1.64173 2.26830 2.31789 2.99875 3.04828 3.32809 3.64189 3.75482 3.84700 3.90272 3.99064 4.09737 4.18928 4.24816 4.30743 4.35055 4.41790 4.46354 4.48201 4.50689 4.58955 4.66124 4.70456 4.73810 4.76277 4.78552 4.83467 4.90032 4.92549 4.97308 5.00361 5.03016 5.08754 5.13727 5.19532 5.21480 5.25081 5.30070 5.41728 5.54662 5.58079 5.78420 5.92903 6.19843 6.21738 6.25429 6.53955 7.06900 7.28231 8.74871 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028042 B = 0.001723 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.250894 B =16247.235319 C =16635.613581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C -0.118 4.118 4 C -0.168 4.168 5 C 0.076 3.924 6 N -0.540 5.540 7 C 0.065 3.935 8 C -0.110 4.110 9 C -0.083 4.083 10 C 0.150 3.850 11 H 0.062 0.938 12 C -0.159 4.159 13 N -0.708 5.708 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.151 6.151 18 C -0.549 4.549 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 C -0.113 4.113 27 C 0.058 3.942 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.026 0.974 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.412 0.588 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.271 0.729 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 23.158 -25.431 34.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.133 4.133 3 C -0.174 4.174 4 C -0.186 4.186 5 C -0.050 4.050 6 N -0.265 5.265 7 C -0.062 4.062 8 C -0.148 4.148 9 C -0.102 4.102 10 C 0.045 3.955 11 H 0.080 0.920 12 C -0.217 4.217 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.281 4.281 17 S 0.076 5.924 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.150 4.150 27 C -0.070 4.070 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.250 0.750 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.102 0.898 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.799 23.525 -23.655 33.861 hybrid contribution -2.129 -1.127 -0.911 2.575 sum 3.670 22.398 -24.566 33.446 Atomic orbital electron populations 1.21072 0.92232 1.02768 1.02562 1.21817 0.96167 0.95512 0.99831 1.20832 0.99623 0.94449 1.02511 1.22504 0.99848 0.93069 1.03178 1.21435 0.98268 0.91229 0.94081 1.62024 1.53928 1.08173 1.02398 1.21994 0.99193 0.96304 0.88748 1.21664 1.00291 0.94878 0.97949 1.21354 0.99950 0.94941 0.93935 1.20954 0.90186 0.85109 0.99222 0.91967 1.22224 0.95628 1.02200 1.01686 1.45921 1.49739 1.28466 1.12148 1.20058 0.80766 0.83860 0.83333 1.90684 1.48452 1.69900 1.35380 1.23384 1.02987 0.98355 1.03417 1.85576 1.63645 1.32694 1.10489 1.23185 1.32836 1.13207 1.00402 0.89910 1.26130 0.97894 1.01159 0.93907 1.70180 1.43595 1.38682 1.02297 0.85005 0.78193 0.76855 0.77945 1.18636 1.20377 1.18663 1.21711 1.03145 0.97619 0.92548 1.22079 0.93693 0.91521 0.99694 0.91514 0.91394 0.91023 0.90850 0.91549 0.91776 0.87133 0.89838 0.93096 0.95608 0.90207 0.91270 0.90289 0.91098 0.95141 0.90722 0.89916 0.74979 0.87336 0.87306 0.91996 0.90327 0.90625 0.89796 0.95000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.86 71.24 0.70 -0.55 16 2 C -0.13 -1.43 6.05 -16.48 -0.10 -1.53 16 3 C -0.12 -1.01 10.04 71.24 0.71 -0.29 16 4 C -0.17 -2.00 7.12 25.65 0.18 -1.81 16 5 C 0.08 0.91 5.52 85.56 0.47 1.38 16 6 N -0.54 -7.34 4.80 -900.92 -4.32 -11.67 16 7 C 0.07 0.92 5.08 86.33 0.44 1.36 16 8 C -0.11 -1.64 5.09 30.65 0.16 -1.49 16 9 C -0.08 -1.34 2.25 -10.72 -0.02 -1.36 16 10 C 0.15 3.42 2.41 44.99 0.11 3.52 16 11 H 0.06 1.77 7.58 -2.39 -0.02 1.75 16 12 C -0.16 -3.50 8.78 71.98 0.63 -2.87 16 13 N -0.71 -18.14 5.00 -442.55 -2.21 -20.35 16 14 C 0.53 19.99 7.81 87.65 0.68 20.68 16 15 O -0.57 -26.67 15.53 -3.03 -0.05 -26.71 16 16 C -0.13 -5.21 6.16 71.23 0.44 -4.78 16 17 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 18 C -0.55 -31.54 9.50 67.96 0.65 -30.90 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.80 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 22 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 26 C -0.11 -1.50 4.87 30.65 0.15 -1.35 16 27 C 0.06 0.72 5.42 86.33 0.47 1.19 16 28 H 0.07 0.68 5.10 -2.39 -0.01 0.67 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.07 0.51 8.12 -2.39 -0.02 0.49 16 33 H 0.06 0.54 8.03 -2.39 -0.02 0.52 16 34 H 0.11 1.39 8.01 -2.91 -0.02 1.37 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.59 4.97 -2.38 -0.01 0.58 16 37 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.08 1.13 6.49 -2.38 -0.02 1.11 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.20 6.31 -2.39 -0.02 1.19 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.07 1.40 6.37 -2.39 -0.02 1.39 16 44 H 0.08 1.52 6.38 -2.39 -0.02 1.50 16 45 H 0.41 7.81 6.93 -92.71 -0.64 7.17 16 46 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 47 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 48 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 49 H 0.08 1.12 6.31 -2.39 -0.02 1.11 16 50 H 0.08 0.88 6.61 -2.39 -0.02 0.86 16 51 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 52 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -74.65 412.46 0.96 -73.69 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.26 Total: 22.56 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 6.14 Total: -17.53 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -6.25 Total: -88.08 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -74.65 0.96 -73.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486443594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.795 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds