Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.30170 * 27.82499 * 4 3 2 6 6 C 1.54381 * 110.34425 * 265.53410 * 4 3 2 7 7 N 1.48143 * 104.61990 * 217.25997 * 6 4 3 8 8 C 1.34777 * 127.83934 * 219.60566 * 7 6 4 9 9 O 1.21603 * 119.99952 * 179.97438 * 8 7 6 10 10 C 1.47295 * 119.99876 * 359.97438 * 8 7 6 11 11 F 1.35097 * 120.00357 * 359.97438 * 10 8 7 12 12 C 1.33116 * 119.99755 * 179.97438 * 10 8 7 13 13 C 1.51450 * 126.34177 * 359.69089 * 12 10 8 14 14 C 1.54281 * 106.84930 * 180.23946 * 13 12 10 15 15 C 1.54986 * 103.65897 * 23.48459 * 14 13 12 16 16 C 1.51848 * 126.34072 * 179.97438 * 12 10 8 17 17 C 1.48140 * 104.32102 * 39.58687 * 7 6 4 18 18 C 1.54287 * 110.34369 * 149.99860 * 4 3 2 19 19 H 1.09005 * 110.34081 * 359.97438 * 18 4 3 20 20 C 1.53001 * 110.34222 * 237.85076 * 18 4 3 21 21 N 1.46500 * 109.47075 * 175.00066 * 20 18 4 22 22 C 1.36938 * 119.99852 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00163 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00063 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99862 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00286 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46989 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47119 * 120.00188 * 26 24 22 29 29 H 1.48500 * 109.47028 * 239.99989 * 26 24 22 30 30 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 35 35 H 1.08999 * 110.40929 * 336.05096 * 6 4 3 36 36 H 1.09003 * 110.40535 * 98.47818 * 6 4 3 37 37 H 1.09000 * 109.98213 * 299.72556 * 13 12 10 38 38 H 1.08998 * 109.98313 * 61.03215 * 13 12 10 39 39 H 1.08995 * 110.79627 * 264.85793 * 14 13 12 40 40 H 1.08999 * 110.55495 * 141.98979 * 14 13 12 41 41 H 1.09002 * 110.82378 * 204.48775 * 15 14 13 42 42 H 1.08997 * 110.83501 * 80.91599 * 15 14 13 43 43 H 1.08999 * 110.43922 * 274.92712 * 16 12 10 44 44 H 1.09003 * 110.43806 * 37.32713 * 16 12 10 45 45 H 1.09005 * 110.40893 * 201.62888 * 17 7 6 46 46 H 1.09007 * 110.41036 * 79.20068 * 17 7 6 47 47 H 1.08997 * 109.46796 * 294.99880 * 20 18 4 48 48 H 1.09005 * 109.47446 * 54.99807 * 20 18 4 49 49 H 0.97000 * 119.99821 * 359.97438 * 21 20 18 50 50 H 0.96999 * 119.99981 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8795 0.5885 -0.4763 6 6 3.9565 1.6150 1.4439 7 7 5.0845 2.5686 1.3308 8 6 6.2670 2.5308 1.9762 9 8 7.0983 3.3949 1.7734 10 6 6.5525 1.4429 2.9272 11 9 5.6289 0.4832 3.1529 12 6 7.7207 1.4053 3.5643 13 6 8.8559 2.3968 3.4165 14 6 9.9880 1.9232 4.3516 15 6 9.7118 0.4077 4.5222 16 6 8.1643 0.3569 4.5692 17 6 4.6179 3.5730 0.3469 18 6 3.8670 2.7512 -0.7228 19 1 2.9946 3.2991 -1.0789 20 6 4.7974 2.4181 -1.8909 21 7 5.1038 3.6420 -2.6354 22 6 5.9246 3.5899 -3.7303 23 1 6.3464 2.6467 -4.0447 24 6 6.2145 4.7495 -4.4362 25 7 5.7008 5.8992 -4.0527 26 14 7.3336 4.6784 -5.9302 27 1 7.7773 3.2785 -6.1502 28 1 6.5944 5.1577 -7.1256 29 1 8.5193 5.5429 -5.7020 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.1785 2.0214 2.0901 36 1 4.3065 0.6560 1.8259 37 1 9.2048 2.4125 2.3840 38 1 8.5226 3.3915 3.7126 39 1 9.9341 2.4330 5.3135 40 1 10.9608 2.0852 3.8874 41 1 10.1401 0.0383 5.4540 42 1 10.0928 -0.1542 3.6695 43 1 7.8049 0.6097 5.5667 44 1 7.8048 -0.6291 4.2745 45 1 5.4668 4.0915 -0.0989 46 1 3.9431 4.2854 0.8217 47 1 5.7213 1.9852 -1.5074 48 1 4.3083 1.7031 -2.5525 49 1 4.7252 4.4892 -2.3528 50 1 5.9031 6.7094 -4.5462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489007779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -99.445376 kcal Electronic energy + Delta-G solvation = -30667.492370 eV Core-core repulsion = 26416.757531 eV Total energy + Delta-G solvation = -4250.734839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.09736 -40.12299 -38.90370 -37.84273 -36.52889 -34.56231 -32.21601 -31.46872 -31.29862 -29.62299 -29.08064 -28.22244 -26.52862 -24.83980 -23.59576 -22.91158 -21.80520 -21.32328 -20.73274 -19.68826 -18.79760 -17.59445 -17.14674 -16.88276 -16.55040 -16.24860 -15.97144 -15.66535 -15.32425 -14.87893 -14.65353 -14.21574 -14.15635 -13.79072 -13.60213 -13.53225 -13.41775 -13.17663 -12.87473 -12.73748 -12.62871 -12.37550 -12.28579 -11.79194 -11.71923 -11.59571 -11.47491 -11.41577 -11.29580 -11.09237 -10.95411 -10.87447 -10.72143 -10.70177 -10.39104 -10.04437 -9.89245 -9.72817 -9.45701 -9.11256 -8.85923 -8.55991 -6.89858 -5.73001 -3.01978 1.02662 2.76645 3.05940 3.46465 3.51471 3.54091 3.61056 3.95193 4.05533 4.36410 4.58817 4.63116 4.72899 4.75314 4.85739 4.96342 4.99787 5.06889 5.15016 5.15408 5.26017 5.27695 5.31524 5.40878 5.45649 5.53216 5.57680 5.59493 5.67228 5.72102 5.76492 5.77849 5.81864 5.85905 5.87410 5.98416 6.02114 6.05387 6.12018 6.15491 6.27445 6.36820 6.42758 6.69240 6.80533 7.25321 7.53230 7.73519 8.05929 8.45177 9.56739 10.12551 10.47786 11.49866 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007217 B = 0.003805 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3878.805073 B = 7356.716195 C =10542.885170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.084 3.916 5 H 0.077 0.923 6 C 0.067 3.933 7 N -0.609 5.609 8 C 0.568 3.432 9 O -0.512 6.512 10 C -0.005 4.005 11 F -0.135 7.135 12 C -0.075 4.075 13 C -0.081 4.081 14 C -0.128 4.128 15 C -0.123 4.123 16 C -0.094 4.094 17 C 0.113 3.887 18 C -0.107 4.107 19 H 0.102 0.898 20 C 0.165 3.835 21 N -0.730 5.730 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.019 0.981 48 H 0.021 0.979 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 -14.358 20.017 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.291 6.291 4 C 0.024 3.976 5 H 0.095 0.905 6 C -0.057 4.057 7 N -0.343 5.343 8 C 0.356 3.644 9 O -0.389 6.389 10 C -0.027 4.027 11 F -0.114 7.114 12 C -0.079 4.079 13 C -0.118 4.118 14 C -0.165 4.165 15 C -0.160 4.160 16 C -0.131 4.131 17 C -0.009 4.009 18 C -0.127 4.127 19 H 0.121 0.879 20 C 0.037 3.963 21 N -0.374 5.374 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.122 0.878 46 H 0.091 0.909 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.218 0.782 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.437 -13.823 19.818 24.206 hybrid contribution 0.232 -0.210 -0.737 0.800 sum -1.205 -14.033 19.081 23.717 Atomic orbital electron populations 1.21738 0.93826 1.02038 1.03203 1.22533 0.95566 0.84081 1.00081 1.87973 1.20184 1.26184 1.94773 1.23007 0.81150 0.99207 0.94199 0.90509 1.23263 0.89223 0.94952 0.98229 1.48694 1.14290 1.28352 1.42978 1.17654 0.80962 0.85188 0.80587 1.90873 1.45094 1.38652 1.64315 1.18840 0.88836 0.91059 1.03986 1.91352 1.64658 1.61805 1.93583 1.23013 0.92969 0.97709 0.94158 1.21182 0.91591 0.97563 1.01480 1.22474 0.98776 0.95493 0.99796 1.22533 0.94200 0.97007 1.02296 1.21497 0.96580 0.97292 0.97757 1.22539 0.99759 0.90664 0.87914 1.22448 0.99687 0.94896 0.95642 0.87938 1.20633 0.94511 0.90950 0.90185 1.42325 1.58128 1.04608 1.32343 1.19233 1.20726 0.93882 1.03158 0.91228 1.24730 1.00958 0.95440 0.99707 1.69670 1.48457 0.98058 1.41817 0.86122 0.80195 0.77192 0.82714 1.20607 1.21865 1.21837 0.91680 0.91954 0.91310 0.93514 0.93152 0.90021 0.88502 0.88822 0.89161 0.91207 0.90807 0.90806 0.90874 0.89254 0.90268 0.87820 0.90941 0.96300 0.96094 0.78155 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.56 6.50 37.16 0.24 0.80 16 3 O -0.37 -4.99 9.95 -35.23 -0.35 -5.34 16 4 C 0.08 1.16 3.20 -25.33 -0.08 1.08 16 5 H 0.08 1.03 7.38 -51.93 -0.38 0.64 16 6 C 0.07 0.86 6.37 -2.41 -0.02 0.85 16 7 N -0.61 -9.53 3.32 -170.63 -0.57 -10.09 16 8 C 0.57 9.29 7.87 -12.58 -0.10 9.19 16 9 O -0.51 -9.82 14.38 5.28 0.08 -9.74 16 10 C -0.01 -0.07 7.34 -37.68 -0.28 -0.35 16 11 F -0.14 -1.65 13.78 2.25 0.03 -1.62 16 12 C -0.08 -0.87 6.16 -100.20 -0.62 -1.49 16 13 C -0.08 -0.93 4.82 -26.84 -0.13 -1.06 16 14 C -0.13 -1.05 6.88 -25.01 -0.17 -1.22 16 15 C -0.12 -0.90 6.94 -24.68 -0.17 -1.07 16 16 C -0.09 -0.79 6.45 -26.31 -0.17 -0.96 16 17 C 0.11 1.92 6.48 -2.42 -0.02 1.91 16 18 C -0.11 -1.81 2.90 -89.22 -0.26 -2.07 16 19 H 0.10 1.79 7.98 -51.93 -0.41 1.38 16 20 C 0.16 3.42 5.37 -4.04 -0.02 3.40 16 21 N -0.73 -18.85 5.21 -59.91 -0.31 -19.16 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 26 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.10 1.14 5.40 -51.93 -0.28 0.86 16 37 H 0.09 1.23 7.67 -51.93 -0.40 0.84 16 38 H 0.09 1.11 7.68 -51.93 -0.40 0.72 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 2.14 7.31 -51.93 -0.38 1.76 16 46 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 47 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.38 10.35 7.61 -40.82 -0.31 10.04 16 50 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -32.80 402.82 -9.45 -42.25 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.45 Total: 7.04 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.65 Total: 0.62 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.15 Total: -57.16 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.27 Total: -15.09 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.03 Total: -1.62 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.80 -9.45 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489007779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.195 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds