Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00180 * 2 1 4 4 C 1.53004 * 109.46948 * 284.64397 * 3 2 1 5 5 C 1.54262 * 110.48615 * 187.34853 * 4 3 2 6 6 C 1.53880 * 106.63959 * 217.73274 * 5 4 3 7 7 C 1.54267 * 106.59824 * 359.97438 * 6 5 4 8 8 C 1.54892 * 104.19721 * 23.60763 * 7 6 5 9 9 C 1.46908 * 110.99723 * 123.95169 * 2 1 3 10 10 H 1.08996 * 109.49535 * 296.04588 * 9 2 1 11 11 C 1.53039 * 109.49897 * 56.11006 * 9 2 1 12 12 C 1.53032 * 109.53807 * 181.31554 * 11 9 2 13 13 C 1.53191 * 109.31443 * 298.63193 * 12 11 9 14 14 N 1.46933 * 108.77477 * 54.63771 * 13 12 11 15 15 C 1.34772 * 120.63453 * 126.43447 * 14 13 12 16 16 O 1.21282 * 120.00117 * 180.02562 * 15 14 13 17 17 C 1.50698 * 119.99994 * 359.97438 * 15 14 13 18 18 S 1.80995 * 109.47257 * 179.97438 * 17 15 14 19 19 C 1.76205 * 100.00135 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99728 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99628 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47394 * 59.99764 * 23 21 19 25 25 H 1.48501 * 109.47442 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47344 * 299.99936 * 23 21 19 27 27 C 1.46940 * 118.76046 * 306.41375 * 14 13 12 28 28 H 1.08999 * 109.46875 * 69.81681 * 1 2 3 29 29 H 1.08996 * 109.47267 * 189.81489 * 1 2 3 30 30 H 1.09000 * 109.46911 * 309.81673 * 1 2 3 31 31 H 1.09000 * 109.47200 * 164.64430 * 3 2 1 32 32 H 1.09001 * 109.47328 * 44.64160 * 3 2 1 33 33 H 1.09004 * 110.53525 * 309.96088 * 4 3 2 34 34 H 1.09006 * 110.03355 * 98.43168 * 5 4 3 35 35 H 1.08991 * 110.03430 * 337.04458 * 5 4 3 36 36 H 1.09002 * 110.02997 * 119.26268 * 6 5 4 37 37 H 1.09003 * 110.03590 * 240.69163 * 6 5 4 38 38 H 1.09005 * 110.48870 * 142.28474 * 7 6 5 39 39 H 1.08998 * 110.48840 * 264.79974 * 7 6 5 40 40 H 1.08998 * 110.75809 * 80.37140 * 8 7 6 41 41 H 1.09002 * 110.75947 * 203.55897 * 8 7 6 42 42 H 1.08998 * 109.45855 * 301.34186 * 11 9 2 43 43 H 1.09005 * 109.45973 * 61.30642 * 11 9 2 44 44 H 1.09000 * 109.49759 * 58.58408 * 12 11 9 45 45 H 1.08997 * 109.49860 * 178.68471 * 12 11 9 46 46 H 1.08994 * 109.59306 * 174.41821 * 13 12 11 47 47 H 1.08999 * 109.58856 * 294.84978 * 13 12 11 48 48 H 1.08999 * 109.47413 * 300.00761 * 17 15 14 49 49 H 1.09007 * 109.46661 * 60.00385 * 17 15 14 50 50 H 0.97000 * 119.99740 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.55987 * 293.78190 * 27 14 13 52 52 H 1.09003 * 109.61288 * 173.35694 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8378 1.9782 -1.3957 5 6 2.5461 3.3464 -1.4727 6 6 1.6599 4.2529 -2.3450 7 6 0.4435 3.4040 -2.7687 8 6 0.3501 2.3047 -1.6815 9 6 1.9954 -0.7660 1.1377 10 1 1.7046 -0.2802 2.0690 11 6 1.4275 -2.1867 1.1036 12 6 1.9494 -2.9755 2.3065 13 6 3.4769 -3.0636 2.2306 14 7 4.0239 -1.7047 2.1168 15 6 4.9673 -1.2700 2.9756 16 8 5.4104 -0.1458 2.8714 17 6 5.4706 -2.1803 4.0659 18 16 6.7229 -1.3144 5.0447 19 6 7.1255 -2.5736 6.2096 20 1 6.6297 -3.5320 6.1618 21 6 8.0797 -2.3340 7.1887 22 7 8.6835 -1.1658 7.2472 23 14 8.5069 -3.6692 8.4231 24 1 9.0225 -4.8617 7.7040 25 1 9.5463 -3.1659 9.3568 26 1 7.2912 -4.0413 9.1906 27 6 3.5235 -0.8282 1.0489 28 1 -0.3633 0.3546 -0.9646 29 1 -0.3633 -1.0126 0.1752 30 1 -0.3633 0.6581 0.7894 31 1 3.0508 1.3554 0.2721 32 1 1.4431 1.9727 0.7221 33 1 2.2320 1.3013 -2.1537 34 1 3.5288 3.2329 -1.9306 35 1 2.6466 3.7716 -0.4742 36 1 1.3296 5.1176 -1.7694 37 1 2.2125 4.5793 -3.2260 38 1 -0.4617 4.0113 -2.7758 39 1 0.6114 2.9597 -3.7498 40 1 -0.1395 2.6875 -0.7861 41 1 -0.1746 1.4284 -2.0622 42 1 0.3390 -2.1436 1.1420 43 1 1.7390 -2.6803 0.1830 44 1 1.6595 -2.4691 3.2272 45 1 1.5261 -3.9799 2.2944 46 1 3.8610 -3.5375 3.1338 47 1 3.7662 -3.6483 1.3574 48 1 4.6404 -2.4688 4.7106 49 1 5.9112 -3.0721 3.6200 50 1 9.3506 -0.9985 7.9312 51 1 3.8171 -1.2303 0.0793 52 1 3.9378 0.1724 1.1725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491908046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -39.142028 kcal Electronic energy + Delta-G solvation = -27968.982604 eV Core-core repulsion = 24287.075891 eV Total energy + Delta-G solvation = -3681.906713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27124 -39.04315 -37.63506 -35.78429 -32.57246 -32.42177 -31.15257 -30.23004 -29.12494 -28.32331 -26.88996 -25.52353 -24.60999 -23.80441 -21.93304 -20.74517 -20.42850 -19.89832 -19.07294 -17.71771 -16.84475 -16.57713 -15.86201 -15.64499 -15.30421 -15.06804 -14.81439 -14.79983 -14.63096 -14.11695 -13.83783 -13.70839 -13.57910 -13.37751 -13.18156 -12.95597 -12.65413 -12.57603 -12.32303 -12.08959 -11.91312 -11.66232 -11.45888 -11.27830 -11.09524 -11.04323 -11.03834 -10.96972 -10.93730 -10.83502 -10.75572 -10.67251 -10.55700 -10.32869 -9.80784 -9.35318 -9.05798 -8.57227 -8.47713 -8.22479 -6.49903 -6.21250 -3.91942 2.89060 3.06052 3.23381 3.24864 3.28828 3.52668 3.75432 4.20479 4.34106 4.39166 4.49678 4.51399 4.68136 4.77718 4.90932 4.97393 5.01169 5.04512 5.12459 5.13681 5.18570 5.26854 5.27331 5.32619 5.32857 5.39597 5.43442 5.46898 5.50070 5.59199 5.60662 5.67283 5.68006 5.71124 5.74089 5.78708 5.81968 5.86766 5.88983 5.90563 5.96926 6.00127 6.11535 6.11841 6.13652 6.22804 6.58442 6.86863 6.91673 7.57457 7.59765 8.35127 8.56991 9.23757 10.86116 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.002220 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.016386 B =12608.456309 C =13812.236147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.532 5.532 3 C 0.053 3.947 4 C -0.083 4.083 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.127 4.127 8 C -0.122 4.122 9 C 0.070 3.930 10 H 0.044 0.956 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.107 3.893 14 N -0.619 5.619 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.121 3.879 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.269 0.731 51 H 0.072 0.928 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.996 1.713 -19.076 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.256 5.256 3 C -0.075 4.075 4 C -0.102 4.102 5 C -0.161 4.161 6 C -0.162 4.162 7 C -0.164 4.164 8 C -0.160 4.160 9 C -0.039 4.039 10 H 0.062 0.938 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.017 4.017 14 N -0.355 5.355 15 C 0.323 3.677 16 O -0.392 6.392 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.002 4.002 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.079 0.921 51 H 0.090 0.910 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.019 3.281 -19.551 27.472 hybrid contribution -0.598 -1.779 1.717 2.544 sum -19.617 1.501 -17.834 26.554 Atomic orbital electron populations 1.22862 0.87588 1.01767 1.01873 1.61949 1.07760 1.13549 1.42381 1.22356 1.00887 0.87895 0.96324 1.21966 0.95305 0.95956 0.96956 1.22179 0.98854 0.94837 1.00198 1.22119 0.96411 0.98235 0.99420 1.22380 0.97876 0.97283 0.98877 1.22833 0.96625 0.98042 0.98456 1.21966 0.95305 0.94445 0.92156 0.93773 1.21665 1.00153 0.94372 0.98900 1.21933 0.95634 1.00898 0.98889 1.21741 0.93412 0.83463 1.03037 1.48073 1.40957 1.14469 1.32038 1.20338 0.78067 0.87796 0.81461 1.90685 1.56636 1.20071 1.71835 1.23548 1.04780 1.02483 0.99214 1.85403 1.44407 1.20279 1.33368 1.22818 1.27414 1.01063 1.17056 0.90998 1.24993 0.95102 0.96287 0.97215 1.70011 1.24993 1.21654 1.33617 0.86226 0.78232 0.80926 0.80126 1.19920 1.20817 1.19955 1.21523 0.91965 0.96378 0.90374 0.90082 0.91197 0.95748 0.90085 0.94460 0.89858 0.91620 0.91713 0.92074 0.92034 0.92064 0.91750 0.91867 0.90948 0.91467 0.90825 0.91403 0.90374 0.89158 0.91351 0.89303 0.89237 0.92135 0.90981 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 8.69 60.06 0.52 0.58 16 2 N -0.53 -5.08 4.56 -234.74 -1.07 -6.15 16 3 C 0.05 0.52 4.40 -3.82 -0.02 0.50 16 4 C -0.08 -0.70 3.06 -88.92 -0.27 -0.97 16 5 C -0.12 -1.01 6.37 -25.61 -0.16 -1.18 16 6 C -0.12 -0.90 6.80 -25.61 -0.17 -1.08 16 7 C -0.13 -0.86 6.83 -25.07 -0.17 -1.03 16 8 C -0.12 -0.88 4.65 -24.70 -0.11 -1.00 16 9 C 0.07 0.76 2.09 -67.59 -0.14 0.62 16 10 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 11 C -0.11 -1.00 4.90 -26.69 -0.13 -1.13 16 12 C -0.13 -1.22 6.08 -26.62 -0.16 -1.38 16 13 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 14 N -0.62 -9.04 2.97 -172.76 -0.51 -9.56 16 15 C 0.54 10.38 7.72 -10.99 -0.08 10.29 16 16 O -0.52 -12.00 15.27 5.56 0.08 -11.91 16 17 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 27 C 0.12 1.57 5.39 -3.70 -0.02 1.55 16 28 H 0.08 0.57 4.67 -51.93 -0.24 0.32 16 29 H 0.07 0.51 5.52 -51.93 -0.29 0.22 16 30 H 0.02 0.20 7.87 -51.93 -0.41 -0.21 16 31 H 0.08 0.91 5.66 -51.93 -0.29 0.62 16 32 H 0.04 0.38 7.65 -51.93 -0.40 -0.01 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 41 H 0.07 0.49 5.96 -51.93 -0.31 0.18 16 42 H 0.07 0.53 5.99 -51.93 -0.31 0.21 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 49 H 0.09 1.70 7.94 -51.91 -0.41 1.29 16 50 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.09 1.39 5.21 -51.93 -0.27 1.12 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -33.02 399.93 -11.64 -44.66 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -9.07 Total: -1.13 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.59 Total: -8.94 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.85 Total: -41.21 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.02 -11.64 -44.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491908046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.518 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds