Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00180 * 2 1 4 4 C 1.53004 * 109.46948 * 284.64397 * 3 2 1 5 5 C 1.54262 * 110.48615 * 187.34853 * 4 3 2 6 6 C 1.53880 * 106.63959 * 217.73274 * 5 4 3 7 7 C 1.54267 * 106.59824 * 359.97438 * 6 5 4 8 8 C 1.54892 * 104.19721 * 23.60763 * 7 6 5 9 9 C 1.46908 * 110.99723 * 123.95169 * 2 1 3 10 10 H 1.08996 * 109.49535 * 296.04588 * 9 2 1 11 11 C 1.53039 * 109.49897 * 56.11006 * 9 2 1 12 12 C 1.53032 * 109.53807 * 181.31554 * 11 9 2 13 13 C 1.53191 * 109.31443 * 298.63193 * 12 11 9 14 14 N 1.46933 * 108.77477 * 54.63771 * 13 12 11 15 15 C 1.34772 * 120.63453 * 126.43447 * 14 13 12 16 16 O 1.21282 * 120.00117 * 180.02562 * 15 14 13 17 17 C 1.50698 * 119.99994 * 359.97438 * 15 14 13 18 18 S 1.80995 * 109.47257 * 179.97438 * 17 15 14 19 19 C 1.76205 * 100.00135 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99728 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99628 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47394 * 59.99764 * 23 21 19 25 25 H 1.48501 * 109.47442 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47344 * 299.99936 * 23 21 19 27 27 C 1.46940 * 118.76046 * 306.41375 * 14 13 12 28 28 H 1.08999 * 109.46875 * 69.81681 * 1 2 3 29 29 H 1.08996 * 109.47267 * 189.81489 * 1 2 3 30 30 H 1.09000 * 109.46911 * 309.81673 * 1 2 3 31 31 H 1.09000 * 109.47200 * 164.64430 * 3 2 1 32 32 H 1.09001 * 109.47328 * 44.64160 * 3 2 1 33 33 H 1.09004 * 110.53525 * 309.96088 * 4 3 2 34 34 H 1.09006 * 110.03355 * 98.43168 * 5 4 3 35 35 H 1.08991 * 110.03430 * 337.04458 * 5 4 3 36 36 H 1.09002 * 110.02997 * 119.26268 * 6 5 4 37 37 H 1.09003 * 110.03590 * 240.69163 * 6 5 4 38 38 H 1.09005 * 110.48870 * 142.28474 * 7 6 5 39 39 H 1.08998 * 110.48840 * 264.79974 * 7 6 5 40 40 H 1.08998 * 110.75809 * 80.37140 * 8 7 6 41 41 H 1.09002 * 110.75947 * 203.55897 * 8 7 6 42 42 H 1.08998 * 109.45855 * 301.34186 * 11 9 2 43 43 H 1.09005 * 109.45973 * 61.30642 * 11 9 2 44 44 H 1.09000 * 109.49759 * 58.58408 * 12 11 9 45 45 H 1.08997 * 109.49860 * 178.68471 * 12 11 9 46 46 H 1.08994 * 109.59306 * 174.41821 * 13 12 11 47 47 H 1.08999 * 109.58856 * 294.84978 * 13 12 11 48 48 H 1.08999 * 109.47413 * 300.00761 * 17 15 14 49 49 H 1.09007 * 109.46661 * 60.00385 * 17 15 14 50 50 H 0.97000 * 119.99740 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.55987 * 293.78190 * 27 14 13 52 52 H 1.09003 * 109.61288 * 173.35694 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8378 1.9782 -1.3957 5 6 2.5461 3.3464 -1.4727 6 6 1.6599 4.2529 -2.3450 7 6 0.4435 3.4040 -2.7687 8 6 0.3501 2.3047 -1.6815 9 6 1.9954 -0.7660 1.1377 10 1 1.7046 -0.2802 2.0690 11 6 1.4275 -2.1867 1.1036 12 6 1.9494 -2.9755 2.3065 13 6 3.4769 -3.0636 2.2306 14 7 4.0239 -1.7047 2.1168 15 6 4.9673 -1.2700 2.9756 16 8 5.4104 -0.1458 2.8714 17 6 5.4706 -2.1803 4.0659 18 16 6.7229 -1.3144 5.0447 19 6 7.1255 -2.5736 6.2096 20 1 6.6297 -3.5320 6.1618 21 6 8.0797 -2.3340 7.1887 22 7 8.6835 -1.1658 7.2472 23 14 8.5069 -3.6692 8.4231 24 1 9.0225 -4.8617 7.7040 25 1 9.5463 -3.1659 9.3568 26 1 7.2912 -4.0413 9.1906 27 6 3.5235 -0.8282 1.0489 28 1 -0.3633 0.3546 -0.9646 29 1 -0.3633 -1.0126 0.1752 30 1 -0.3633 0.6581 0.7894 31 1 3.0508 1.3554 0.2721 32 1 1.4431 1.9727 0.7221 33 1 2.2320 1.3013 -2.1537 34 1 3.5288 3.2329 -1.9306 35 1 2.6466 3.7716 -0.4742 36 1 1.3296 5.1176 -1.7694 37 1 2.2125 4.5793 -3.2260 38 1 -0.4617 4.0113 -2.7758 39 1 0.6114 2.9597 -3.7498 40 1 -0.1395 2.6875 -0.7861 41 1 -0.1746 1.4284 -2.0622 42 1 0.3390 -2.1436 1.1420 43 1 1.7390 -2.6803 0.1830 44 1 1.6595 -2.4691 3.2272 45 1 1.5261 -3.9799 2.2944 46 1 3.8610 -3.5375 3.1338 47 1 3.7662 -3.6483 1.3574 48 1 4.6404 -2.4688 4.7106 49 1 5.9112 -3.0721 3.6200 50 1 9.3506 -0.9985 7.9312 51 1 3.8171 -1.2303 0.0793 52 1 3.9378 0.1724 1.1725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491908046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = -59.045584 kcal Electronic energy + Delta-G solvation = -27969.845687 eV Core-core repulsion = 24287.075891 eV Total energy + Delta-G solvation = -3682.769796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40384 -39.99678 -38.63631 -36.76712 -34.59386 -33.60361 -32.20930 -31.09149 -30.14831 -29.23059 -27.69952 -27.62111 -25.66502 -24.67610 -22.77607 -21.43904 -21.33466 -20.65310 -20.35700 -19.53288 -18.29807 -17.37577 -16.95347 -16.87942 -16.69415 -16.36023 -16.23276 -15.72015 -15.55050 -15.37852 -15.08767 -14.68795 -14.44674 -14.35048 -14.25411 -14.10582 -13.99807 -13.47690 -13.41648 -13.17996 -13.06740 -12.86988 -12.82370 -12.63458 -12.55876 -12.15107 -12.02475 -11.83175 -11.79759 -11.73464 -11.58875 -11.48918 -11.33179 -11.23255 -11.13903 -11.13172 -10.91456 -10.27992 -9.72174 -9.35920 -8.69169 -8.35087 -6.14116 1.23344 1.43732 1.44318 1.52564 1.54777 2.02596 2.26701 2.87533 2.98873 3.23277 3.54685 3.70432 3.75037 3.79782 3.86939 3.90774 3.97346 4.05834 4.21651 4.23312 4.28804 4.35248 4.41190 4.48484 4.50711 4.57992 4.60092 4.64551 4.66185 4.74233 4.78639 4.80576 4.83131 4.86139 4.89864 4.99655 5.03830 5.05439 5.10192 5.11694 5.21975 5.28578 5.36478 5.39593 5.40635 5.47865 5.50213 5.55367 6.04874 6.10614 6.18822 6.26407 7.05657 7.09814 8.73978 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.002220 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.016386 B =12608.456309 C =13812.236147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.529 5.529 3 C 0.056 3.944 4 C -0.078 4.078 5 C -0.126 4.126 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.117 4.117 9 C 0.077 3.923 10 H 0.021 0.979 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.096 3.904 14 N -0.606 5.606 15 C 0.531 3.469 16 O -0.569 6.569 17 C -0.121 4.121 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.121 3.879 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.109 0.891 50 H 0.271 0.729 51 H 0.085 0.915 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.381 -1.100 -20.132 30.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.253 5.253 3 C -0.072 4.072 4 C -0.097 4.097 5 C -0.164 4.164 6 C -0.162 4.162 7 C -0.161 4.161 8 C -0.154 4.154 9 C -0.032 4.032 10 H 0.039 0.961 11 C -0.144 4.144 12 C -0.167 4.167 13 C -0.026 4.026 14 N -0.340 5.340 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.272 4.272 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.186 1.186 27 C -0.001 4.001 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.125 0.875 49 H 0.127 0.873 50 H 0.080 0.920 51 H 0.103 0.897 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.459 0.433 -20.644 29.780 hybrid contribution 0.068 -0.887 1.933 2.128 sum -21.391 -0.454 -18.711 28.423 Atomic orbital electron populations 1.22946 0.86067 1.02600 1.02449 1.62009 1.09005 1.12958 1.41369 1.22299 0.99452 0.88354 0.97123 1.21898 0.96479 0.95631 0.95655 1.22200 0.99110 0.95241 0.99857 1.22127 0.96577 0.98103 0.99361 1.22378 0.97859 0.97036 0.98846 1.22791 0.95407 0.98653 0.98575 1.21864 0.93520 0.96174 0.91630 0.96106 1.21659 1.01114 0.92407 0.99259 1.21922 0.93809 1.02580 0.98366 1.22128 0.94958 0.81280 1.04207 1.48090 1.39139 1.16084 1.30695 1.20193 0.78946 0.86947 0.81982 1.90668 1.58818 1.21969 1.73277 1.23350 1.02925 1.02103 0.98824 1.85619 1.47966 1.23522 1.35606 1.23158 1.27750 1.01216 1.17173 0.89783 1.26161 0.94734 0.98937 0.99428 1.70187 1.25771 1.24182 1.34680 0.84987 0.78305 0.77510 0.77094 1.18521 1.20454 1.18575 1.21594 0.93684 0.94779 0.90082 0.88792 0.89813 0.96292 0.92289 0.95385 0.90159 0.92025 0.92869 0.92016 0.91476 0.91120 0.91156 0.92211 0.89923 0.89666 0.89728 0.92681 0.87189 0.89185 0.88890 0.87463 0.87284 0.91999 0.89730 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.69 127.69 1.11 1.20 16 2 N -0.53 -9.57 4.56 -896.58 -4.09 -13.67 16 3 C 0.06 1.13 4.40 86.30 0.38 1.51 16 4 C -0.08 -1.29 3.06 -9.69 -0.03 -1.32 16 5 C -0.13 -2.15 6.37 31.32 0.20 -1.95 16 6 C -0.12 -1.72 6.80 31.32 0.21 -1.51 16 7 C -0.12 -1.47 6.83 31.67 0.22 -1.25 16 8 C -0.12 -1.52 4.65 31.91 0.15 -1.38 16 9 C 0.08 1.60 2.09 44.99 0.09 1.70 16 10 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 11 C -0.11 -1.55 4.90 30.62 0.15 -1.40 16 12 C -0.13 -1.90 6.08 30.67 0.19 -1.72 16 13 C 0.10 1.87 6.34 86.36 0.55 2.42 16 14 N -0.61 -17.37 2.97 -818.88 -2.43 -19.81 16 15 C 0.53 21.05 7.72 87.66 0.68 21.73 16 16 O -0.57 -27.86 15.27 -3.04 -0.05 -27.91 16 17 C -0.12 -4.97 4.50 71.24 0.32 -4.65 16 18 S -0.15 -8.75 20.57 -56.49 -1.16 -9.92 16 19 C -0.55 -31.33 9.50 67.95 0.65 -30.69 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 23 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 C 0.12 3.17 5.39 86.36 0.47 3.64 16 28 H 0.09 1.06 4.67 -2.39 -0.01 1.05 16 29 H 0.08 0.93 5.52 -2.39 -0.01 0.92 16 30 H 0.02 0.28 7.87 -2.39 -0.02 0.27 16 31 H 0.06 1.46 5.66 -2.39 -0.01 1.44 16 32 H 0.03 0.61 7.65 -2.39 -0.02 0.59 16 33 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.05 1.01 7.84 -2.39 -0.02 0.99 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.83 7.90 -2.39 -0.02 0.81 16 41 H 0.08 0.92 5.96 -2.39 -0.01 0.90 16 42 H 0.08 0.99 5.99 -2.39 -0.01 0.98 16 43 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 1.79 5.93 -2.39 -0.01 1.77 16 47 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.11 3.98 7.69 -2.40 -0.02 3.97 16 49 H 0.11 4.03 7.94 -2.39 -0.02 4.01 16 50 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.06 2.07 5.21 -2.39 -0.01 2.06 16 Total: -1.00 -75.37 399.93 1.26 -74.11 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.89 Total: 20.27 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 5.79 Total: -12.51 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -6.24 Total: -89.73 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.92 kcal Total: -75.37 1.26 -74.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491908046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.067 kcal (2) G-P(sol) polarization free energy of solvation -75.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds