Wall clock time and date at job start Sat Apr 11 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00096 * 2 1 4 4 C 1.52997 * 109.47221 * 199.68588 * 3 2 1 5 5 C 1.54893 * 110.49168 * 70.10550 * 4 3 2 6 6 C 1.55231 * 102.58781 * 156.67658 * 5 4 3 7 7 C 1.54268 * 104.23685 * 322.08875 * 6 5 4 8 8 C 1.53873 * 106.59582 * 23.60618 * 7 6 5 9 9 C 1.46901 * 111.00279 * 123.95088 * 2 1 3 10 10 H 1.08996 * 109.50156 * 186.10579 * 9 2 1 11 11 C 1.53046 * 109.49540 * 66.04348 * 9 2 1 12 12 C 1.53043 * 109.53776 * 178.68342 * 11 9 2 13 13 C 1.53192 * 109.31118 * 61.36519 * 12 11 9 14 14 N 1.46919 * 108.77994 * 305.36709 * 13 12 11 15 15 C 1.34775 * 120.63336 * 233.60850 * 14 13 12 16 16 O 1.21278 * 119.99984 * 179.97438 * 15 14 13 17 17 C 1.50699 * 119.99655 * 0.02562 * 15 14 13 18 18 S 1.81004 * 109.47101 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99961 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00328 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00142 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99681 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00291 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46999 * 89.99691 * 23 21 19 25 25 H 1.48503 * 109.46997 * 209.99488 * 23 21 19 26 26 H 1.48496 * 109.46987 * 329.99902 * 23 21 19 27 27 C 1.46934 * 118.74022 * 53.60262 * 14 13 12 28 28 H 1.08994 * 109.47547 * 65.39432 * 1 2 3 29 29 H 1.08996 * 109.47300 * 185.39853 * 1 2 3 30 30 H 1.09008 * 109.47124 * 305.39257 * 1 2 3 31 31 H 1.08994 * 109.47280 * 79.68180 * 3 2 1 32 32 H 1.09003 * 109.46747 * 319.67833 * 3 2 1 33 33 H 1.09008 * 110.43284 * 307.56614 * 4 3 2 34 34 H 1.09001 * 110.75410 * 275.06822 * 5 4 3 35 35 H 1.09002 * 110.74854 * 38.43888 * 5 4 3 36 36 H 1.08996 * 110.46997 * 203.39356 * 6 5 4 37 37 H 1.09010 * 110.58291 * 80.83577 * 6 5 4 38 38 H 1.08997 * 110.02777 * 264.32760 * 7 6 5 39 39 H 1.08992 * 110.03594 * 142.89488 * 7 6 5 40 40 H 1.09000 * 110.03500 * 240.71478 * 8 7 6 41 41 H 1.09004 * 110.02834 * 119.28607 * 8 7 6 42 42 H 1.08993 * 109.46406 * 298.70726 * 11 9 2 43 43 H 1.09002 * 109.45768 * 58.67626 * 11 9 2 44 44 H 1.08997 * 109.49581 * 181.31735 * 12 11 9 45 45 H 1.09001 * 109.49392 * 301.41464 * 12 11 9 46 46 H 1.09008 * 109.58259 * 65.15199 * 13 12 11 47 47 H 1.08996 * 109.58743 * 185.57735 * 13 12 11 48 48 H 1.09007 * 109.46860 * 299.99636 * 17 15 14 49 49 H 1.08998 * 109.47476 * 59.99556 * 17 15 14 50 50 H 0.97002 * 120.00337 * 179.97438 * 22 21 19 51 51 H 1.08999 * 109.58673 * 186.60450 * 27 14 13 52 52 H 1.08999 * 109.57964 * 66.18337 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4462 1.3608 -0.4859 5 6 3.5091 1.0317 -1.9982 6 6 4.8711 1.6445 -2.4214 7 6 4.9686 2.9511 -1.6071 8 6 4.0625 2.7708 -0.3765 9 6 1.9955 -0.7659 1.1376 10 1 3.0796 -0.6605 1.1767 11 6 1.6317 -2.2431 0.9710 12 6 2.2079 -3.0470 2.1389 13 6 1.5972 -2.5436 3.4505 14 7 1.8170 -1.0943 3.5490 15 6 2.4061 -0.5615 4.6378 16 8 2.5823 0.6364 4.7069 17 6 2.8469 -1.4544 5.7689 18 16 3.5959 -0.4491 7.0745 19 6 4.0063 -1.7104 8.2344 20 1 3.7771 -2.7424 8.0136 21 6 4.6231 -1.3775 9.4324 22 7 4.9020 -0.1196 9.7018 23 14 5.0576 -2.7145 10.6624 24 1 6.4268 -3.2174 10.3838 25 1 5.0052 -2.1575 12.0381 26 1 4.0863 -3.8314 10.5432 27 6 1.3824 -0.2367 2.4379 28 1 -0.3634 0.4279 -0.9343 29 1 -0.3634 -1.0231 0.0967 30 1 -0.3634 0.5952 0.8378 31 1 1.9538 1.7766 1.0110 32 1 1.3941 1.9914 -0.6650 33 1 4.0337 0.6422 0.0857 34 1 3.5008 -0.0463 -2.1595 35 1 2.6876 1.5096 -2.5319 36 1 4.8767 1.8595 -3.4899 37 1 5.6901 0.9726 -2.1641 38 1 4.6203 3.7918 -2.2071 39 1 5.9983 3.1184 -1.2914 40 1 3.2747 3.5240 -0.3793 41 1 4.6527 2.8505 0.5365 42 1 0.5472 -2.3506 0.9562 43 1 2.0463 -2.6158 0.0343 44 1 1.9684 -4.1022 2.0074 45 1 3.2900 -2.9201 2.1690 46 1 0.5273 -2.7524 3.4593 47 1 2.0761 -3.0438 4.2922 48 1 1.9837 -1.9857 6.1700 49 1 3.5774 -2.1744 5.4000 50 1 5.3327 0.1132 10.5391 51 1 1.7195 0.7852 2.6116 52 1 0.2951 -0.2574 2.3642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491908047.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:20 Heat of formation + Delta-G solvation = -66.971002 kcal Electronic energy + Delta-G solvation = -28320.163665 eV Core-core repulsion = 24637.050197 eV Total energy + Delta-G solvation = -3683.113468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50161 -39.92164 -38.62150 -36.79471 -34.60324 -33.57641 -31.99244 -31.10762 -29.86528 -29.49148 -27.71607 -26.92621 -26.17742 -25.06308 -22.81128 -21.66853 -21.08551 -20.69395 -20.03265 -19.53134 -18.28259 -17.17409 -17.05417 -16.89349 -16.80703 -16.37307 -16.02486 -15.82389 -15.51918 -15.30236 -14.98621 -14.89807 -14.47966 -14.47342 -14.16931 -14.04465 -13.91335 -13.65188 -13.43895 -13.18067 -12.90399 -12.87167 -12.83361 -12.62090 -12.26364 -12.09658 -11.91938 -11.89403 -11.84914 -11.80874 -11.72510 -11.60799 -11.42699 -11.33542 -11.15779 -11.15501 -10.94049 -10.28768 -9.96262 -9.11743 -8.70140 -8.36108 -6.15141 1.22795 1.41760 1.43948 1.51502 1.55255 2.03572 2.25717 2.88350 2.98097 3.22515 3.58119 3.69535 3.75737 3.80558 3.83173 3.93008 4.00244 4.02893 4.19111 4.22072 4.24565 4.34975 4.40926 4.46920 4.51347 4.57966 4.59254 4.65079 4.69969 4.74898 4.76772 4.81673 4.84129 4.86959 4.92891 4.96889 5.08136 5.08506 5.11641 5.14984 5.25388 5.27864 5.36130 5.40072 5.41453 5.46039 5.49575 5.55450 6.06099 6.10212 6.18184 6.24793 7.04859 7.08706 8.73286 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.002534 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.559656 B =11046.084366 C =12106.838980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.522 5.522 3 C 0.059 3.941 4 C -0.085 4.085 5 C -0.095 4.095 6 C -0.127 4.127 7 C -0.122 4.122 8 C -0.125 4.125 9 C 0.078 3.922 10 H 0.065 0.935 11 C -0.101 4.101 12 C -0.129 4.129 13 C 0.096 3.904 14 N -0.603 5.603 15 C 0.530 3.470 16 O -0.570 6.570 17 C -0.121 4.121 18 S -0.155 6.155 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.256 1.256 27 C 0.084 3.916 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.019 0.981 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.271 0.729 51 H 0.058 0.942 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 -5.130 -26.868 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.069 4.069 4 C -0.104 4.104 5 C -0.132 4.132 6 C -0.165 4.165 7 C -0.160 4.160 8 C -0.163 4.163 9 C -0.032 4.032 10 H 0.083 0.917 11 C -0.139 4.139 12 C -0.167 4.167 13 C -0.026 4.026 14 N -0.337 5.337 15 C 0.318 3.682 16 O -0.448 6.448 17 C -0.272 4.272 18 S 0.072 5.928 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.180 1.180 27 C -0.040 4.040 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.127 0.873 45 H 0.075 0.925 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.126 0.874 49 H 0.126 0.874 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.134 -3.471 -27.117 28.523 hybrid contribution 0.104 -0.911 1.970 2.173 sum -8.030 -4.381 -25.147 26.759 Atomic orbital electron populations 1.22576 0.86507 1.02973 1.01302 1.62343 1.08636 1.13326 1.40107 1.22235 0.95988 0.89525 0.99157 1.21911 0.94595 0.96185 0.97664 1.22378 0.96793 1.00617 0.93456 1.22457 0.97714 0.96323 0.99968 1.22110 0.99275 0.98558 0.96063 1.22194 0.99031 0.96940 0.98183 1.22034 0.98944 0.95576 0.86637 0.91661 1.21535 1.01964 0.91465 0.98895 1.21919 1.00336 1.01401 0.93052 1.22131 1.02560 0.77721 1.00143 1.48057 1.59485 1.09313 1.16874 1.20216 0.76728 0.87973 0.83302 1.90666 1.56519 1.17386 1.80273 1.23349 1.04595 1.01954 0.97283 1.85624 1.77020 1.14629 1.15500 1.23179 1.46115 0.94734 1.05142 0.89814 1.26160 0.94543 0.98858 0.99670 1.70190 1.40381 1.19074 1.25233 0.84934 0.79044 0.77499 0.76383 1.19258 1.20314 1.18025 1.22340 0.99846 0.94871 0.86936 0.90077 0.89679 0.95984 0.96270 0.89495 0.92863 0.91478 0.91065 0.90652 0.92320 0.90987 0.92322 0.91421 0.93659 0.90116 0.89853 0.87319 0.92539 0.89015 0.89259 0.87377 0.87447 0.91988 0.92362 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.50 127.69 1.09 1.27 16 2 N -0.52 -8.91 4.53 -896.60 -4.06 -12.97 16 3 C 0.06 1.12 4.17 86.30 0.36 1.48 16 4 C -0.08 -1.64 2.92 -9.72 -0.03 -1.67 16 5 C -0.09 -1.49 6.25 32.01 0.20 -1.29 16 6 C -0.13 -1.90 6.84 31.79 0.22 -1.68 16 7 C -0.12 -2.00 6.80 31.32 0.21 -1.78 16 8 C -0.13 -2.46 6.37 31.32 0.20 -2.26 16 9 C 0.08 1.55 2.25 44.99 0.10 1.65 16 10 H 0.07 1.62 6.58 -2.39 -0.02 1.60 16 11 C -0.10 -1.43 5.08 30.62 0.16 -1.28 16 12 C -0.13 -1.90 6.08 30.67 0.19 -1.71 16 13 C 0.10 1.85 6.34 86.36 0.55 2.39 16 14 N -0.60 -17.11 2.97 -818.91 -2.43 -19.54 16 15 C 0.53 21.01 7.72 87.66 0.68 21.69 16 16 O -0.57 -28.02 15.27 -3.02 -0.05 -28.07 16 17 C -0.12 -4.97 4.50 71.24 0.32 -4.65 16 18 S -0.15 -8.80 20.57 -56.49 -1.16 -9.97 16 19 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 23 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 C 0.08 2.13 5.04 86.36 0.44 2.57 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.93 6.13 -2.39 -0.01 0.91 16 30 H 0.02 0.33 6.68 -2.38 -0.02 0.32 16 31 H 0.02 0.46 6.28 -2.39 -0.02 0.44 16 32 H 0.09 1.41 7.82 -2.39 -0.02 1.39 16 33 H 0.05 1.26 6.68 -2.38 -0.02 1.24 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.02 7.97 -2.39 -0.02 1.00 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.24 7.84 -2.39 -0.02 1.22 16 41 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.08 0.93 6.44 -2.39 -0.02 0.92 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.09 1.77 5.93 -2.39 -0.01 1.76 16 48 H 0.11 4.01 7.94 -2.39 -0.02 3.99 16 49 H 0.11 4.00 7.69 -2.40 -0.02 3.99 16 50 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.06 1.89 5.55 -2.39 -0.01 1.88 16 52 H 0.08 1.78 6.25 -2.39 -0.01 1.77 16 Total: -1.00 -75.71 402.75 1.28 -74.43 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.88 Total: 21.45 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.78 Total: -14.74 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -6.21 Total: -88.83 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.97 kcal Total: -75.71 1.28 -74.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491908047.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.458 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds