Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47287 * 2 1 4 4 C 1.34771 * 119.99899 * 269.99883 * 3 2 1 5 5 O 1.21287 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.50694 * 120.00521 * 0.02562 * 4 3 2 7 7 S 1.81005 * 109.47624 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99970 * 179.97438 * 7 6 4 9 9 H 1.07990 * 120.00134 * 359.97438 * 8 7 6 10 10 C 1.38802 * 119.99703 * 180.02562 * 8 7 6 11 11 N 1.31628 * 119.99889 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00060 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47126 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47207 * 119.99881 * 12 10 8 15 15 H 1.48500 * 109.47134 * 239.99954 * 12 10 8 16 16 C 1.46498 * 119.99663 * 90.00103 * 3 2 1 17 17 H 1.08997 * 110.87600 * 2.39195 * 16 3 2 18 18 C 1.55140 * 110.98879 * 238.54689 * 16 3 2 19 19 C 1.54325 * 103.01814 * 206.22000 * 18 16 3 20 20 N 1.47447 * 107.23201 * 22.28042 * 19 18 16 21 21 C 1.46904 * 110.99438 * 123.26113 * 20 19 18 22 22 C 1.52996 * 109.46641 * 164.45868 * 21 20 19 23 23 C 1.54269 * 110.03047 * 291.96330 * 22 21 20 24 24 C 1.54892 * 104.19602 * 217.10729 * 23 22 21 25 25 C 1.54886 * 102.74873 * 37.94896 * 24 23 22 26 26 C 1.53876 * 110.03043 * 174.80200 * 22 21 20 27 27 C 1.47845 * 108.56544 * 0.99298 * 20 19 18 28 28 H 1.08998 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47238 * 300.00115 * 1 2 3 30 30 H 1.09005 * 109.47121 * 59.99674 * 1 2 3 31 31 H 1.09005 * 109.46768 * 240.00199 * 2 1 3 32 32 H 1.09005 * 109.47121 * 120.00326 * 2 1 3 33 33 H 1.09006 * 109.47252 * 299.99919 * 6 4 3 34 34 H 1.09005 * 109.47109 * 59.99760 * 6 4 3 35 35 H 0.96997 * 120.00129 * 180.02562 * 11 10 8 36 36 H 1.08997 * 110.70297 * 87.83847 * 18 16 3 37 37 H 1.09000 * 110.85768 * 324.66875 * 18 16 3 38 38 H 1.09003 * 109.88376 * 262.87991 * 19 18 16 39 39 H 1.08998 * 110.02363 * 141.76956 * 19 18 16 40 40 H 1.08995 * 109.46815 * 284.45139 * 21 20 19 41 41 H 1.08990 * 109.47325 * 44.45546 * 21 20 19 42 42 H 1.08998 * 110.02646 * 53.41090 * 22 21 20 43 43 H 1.09000 * 110.48869 * 335.79061 * 23 22 21 44 44 H 1.09005 * 110.48328 * 98.43318 * 23 22 21 45 45 H 1.08998 * 110.75703 * 279.62827 * 24 23 22 46 46 H 1.09005 * 110.75408 * 156.25938 * 24 23 22 47 47 H 1.09001 * 110.48796 * 203.37913 * 25 24 23 48 48 H 1.08992 * 110.49026 * 80.73214 * 25 24 23 49 49 H 1.08997 * 110.03474 * 238.56511 * 26 22 21 50 50 H 1.08998 * 110.03593 * 359.97438 * 26 22 21 51 51 H 1.09008 * 110.37204 * 94.73466 * 27 20 19 52 52 H 1.08999 * 110.37245 * 217.07081 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6469 3.1602 -1.1672 6 6 1.9913 1.3064 -2.4723 7 16 2.3829 2.4155 -3.8481 8 6 2.0097 1.3594 -5.2082 9 1 1.6553 0.3549 -5.0305 10 6 2.1721 1.8183 -6.5081 11 7 2.6045 3.0426 -6.7246 12 14 1.7758 0.6990 -7.9500 13 1 1.3107 -0.6166 -7.4422 14 1 0.7082 1.3165 -8.7771 15 1 2.9941 0.5072 -8.7772 16 6 2.2625 2.0717 1.2688 17 1 2.0736 1.4098 2.1138 18 6 1.4084 3.3627 1.3722 19 6 2.2331 4.2495 2.3287 20 7 3.6256 3.7672 2.2800 21 6 4.5439 4.8480 1.8969 22 6 5.9804 4.4372 2.2261 23 6 6.1712 4.3617 3.7551 24 6 7.6075 4.8939 3.9855 25 6 7.7186 6.0381 2.9475 26 6 6.9643 5.5031 1.7126 27 6 3.7013 2.6433 1.3224 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 2.6212 0.4186 -2.5303 34 1 0.9432 1.0127 -2.5299 35 1 2.7177 3.3634 -7.6329 36 1 0.4291 3.1438 1.7977 37 1 1.3057 3.8393 0.3973 38 1 1.8453 4.1607 3.3436 39 1 2.1892 5.2893 2.0048 40 1 4.4562 5.0371 0.8271 41 1 4.2895 5.7533 2.4480 42 1 6.2058 3.4719 1.7729 43 1 5.4436 4.9954 4.2622 44 1 6.0865 3.3310 4.0996 45 1 8.3444 4.1165 3.7839 46 1 7.7186 5.2796 4.9989 47 1 8.7630 6.2309 2.7025 48 1 7.2409 6.9425 3.3240 49 1 7.6675 5.0549 1.0107 50 1 6.4184 6.3128 1.2285 51 1 4.0039 3.0026 0.3387 52 1 4.3976 1.8853 1.6812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494882758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -44.622496 kcal Electronic energy + Delta-G solvation = -28351.153084 eV Core-core repulsion = 24669.008719 eV Total energy + Delta-G solvation = -3682.144364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36357 -38.77580 -37.32360 -35.63580 -32.45283 -32.40945 -30.36155 -29.62922 -28.82750 -28.51183 -27.49797 -25.49894 -24.11141 -23.30773 -21.82274 -20.96545 -20.58926 -19.51005 -18.86106 -17.60048 -16.70033 -16.65982 -15.81574 -15.40816 -15.19162 -15.04073 -14.82361 -14.37471 -14.12616 -13.86496 -13.66656 -13.57709 -13.38147 -13.31831 -13.25466 -12.82618 -12.57845 -12.15245 -12.05797 -12.00630 -11.65924 -11.38489 -11.32284 -11.22663 -11.19791 -11.08733 -11.07968 -11.03463 -10.96726 -10.78616 -10.71383 -10.70885 -10.53454 -10.30035 -9.81532 -9.18257 -9.09094 -8.51048 -8.24586 -8.22847 -6.51762 -6.23715 -3.94018 2.87170 3.01066 3.19840 3.23822 3.29228 3.55467 4.04673 4.18520 4.56680 4.57930 4.61995 4.67295 4.74550 4.85974 4.94838 5.10524 5.11696 5.16102 5.21786 5.27768 5.34870 5.38433 5.43109 5.46487 5.52504 5.54831 5.57866 5.59733 5.66882 5.72574 5.75727 5.76627 5.81637 5.86367 5.89861 5.91123 5.98775 5.99840 6.04142 6.07109 6.12505 6.20560 6.23492 6.24236 6.26703 6.41863 6.74582 7.01986 7.11289 7.55207 7.58384 8.33567 8.54962 9.21923 10.83740 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.002787 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.176629 B =10045.841853 C =11674.173332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.613 5.613 4 C 0.535 3.465 5 O -0.511 6.511 6 C -0.151 4.151 7 S -0.062 6.062 8 C -0.533 4.533 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.145 3.855 17 H 0.096 0.904 18 C -0.155 4.155 19 C 0.049 3.951 20 N -0.523 5.523 21 C 0.058 3.942 22 C -0.085 4.085 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.123 4.123 27 C 0.024 3.976 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.081 0.919 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 -1.458 22.309 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.348 5.348 4 C 0.324 3.676 5 O -0.386 6.386 6 C -0.302 4.302 7 S 0.165 5.835 8 C -0.682 4.682 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.040 3.960 17 H 0.114 0.886 18 C -0.194 4.194 19 C -0.079 4.079 20 N -0.247 5.247 21 C -0.071 4.071 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.167 4.167 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.104 4.104 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.099 0.901 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.216 0.204 22.663 22.891 hybrid contribution -1.078 -1.854 -1.795 2.797 sum 2.137 -1.650 20.867 21.041 Atomic orbital electron populations 1.22225 0.95957 1.02146 1.02705 1.21568 0.94498 0.82339 1.03237 1.47938 1.67376 1.14239 1.05225 1.20284 0.76411 0.86492 0.84442 1.90634 1.43702 1.17416 1.86818 1.23603 1.04687 1.04513 0.97370 1.85362 1.86866 1.17930 0.93381 1.22888 1.51638 1.01460 0.92188 0.90945 1.24990 0.94678 0.95543 0.98387 1.70025 1.43069 1.15629 1.21551 0.86125 0.78190 0.80091 0.81152 1.19618 1.20564 1.20561 1.22052 0.94869 0.93576 0.85504 0.88624 1.23155 0.98397 0.96235 1.01659 1.22687 0.88162 0.98007 0.99087 1.63568 1.05228 1.08210 1.47648 1.22484 0.92072 0.93332 0.99182 1.21715 0.93663 0.98851 0.96166 1.22251 0.95553 1.01005 0.95203 1.22554 0.97694 0.97914 0.98532 1.22341 0.99885 0.98149 0.95715 1.22199 0.97881 0.98406 0.97602 1.23491 0.96339 0.93800 0.96794 0.91617 0.92504 0.91966 0.89915 0.90592 0.89418 0.89339 0.92253 0.91310 0.89224 0.90899 0.92714 0.93748 0.91283 0.91182 0.91686 0.91857 0.91835 0.92035 0.92062 0.91891 0.91798 0.91716 0.90084 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.11 1.13 5.92 -4.04 -0.02 1.11 16 3 N -0.61 -8.40 2.56 -163.69 -0.42 -8.82 16 4 C 0.54 9.77 6.97 -10.99 -0.08 9.70 16 5 O -0.51 -10.90 11.91 5.55 0.07 -10.83 16 6 C -0.15 -3.02 4.71 36.00 0.17 -2.86 16 7 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 8 C -0.53 -15.07 9.50 30.94 0.29 -14.78 16 9 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 11 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 12 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.14 1.79 3.54 -65.80 -0.23 1.56 16 17 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 18 C -0.16 -1.98 6.30 -24.90 -0.16 -2.13 16 19 C 0.05 0.57 6.84 -2.83 -0.02 0.55 16 20 N -0.52 -6.39 4.95 -231.25 -1.14 -7.54 16 21 C 0.06 0.70 3.73 -3.82 -0.01 0.69 16 22 C -0.08 -0.93 2.99 -89.50 -0.27 -1.20 16 23 C -0.10 -0.99 6.19 -25.07 -0.16 -1.14 16 24 C -0.13 -1.11 6.91 -24.74 -0.17 -1.28 16 25 C -0.12 -1.08 6.83 -25.07 -0.17 -1.26 16 26 C -0.12 -1.27 6.46 -25.61 -0.17 -1.43 16 27 C 0.02 0.33 5.35 -2.30 -0.01 0.31 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.73 7.22 -51.93 -0.37 0.36 16 31 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.08 0.63 7.94 -51.93 -0.41 0.21 16 33 H 0.09 1.64 7.40 -51.91 -0.38 1.26 16 34 H 0.09 1.67 7.19 -51.91 -0.37 1.29 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.46 6.14 -51.93 -0.32 1.15 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.65 7.47 -51.93 -0.39 0.27 16 40 H 0.04 0.65 7.69 -51.93 -0.40 0.25 16 41 H 0.07 0.78 7.72 -51.93 -0.40 0.38 16 42 H 0.07 0.85 7.58 -51.93 -0.39 0.46 16 43 H 0.06 0.64 7.76 -51.93 -0.40 0.24 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.68 7.67 -51.93 -0.40 0.29 16 51 H 0.08 1.38 5.06 -51.92 -0.26 1.12 16 52 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -31.88 408.87 -12.00 -43.88 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -9.45 Total: 1.52 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.72 Total: -11.49 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -0.83 Total: -41.65 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.88 -12.00 -43.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494882758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.745 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds