Wall clock time and date at job start Sat Apr 11 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47287 * 2 1 4 4 C 1.34771 * 119.99899 * 269.99883 * 3 2 1 5 5 O 1.21287 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.50694 * 120.00521 * 0.02562 * 4 3 2 7 7 S 1.81005 * 109.47624 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99970 * 179.97438 * 7 6 4 9 9 H 1.07990 * 120.00134 * 359.97438 * 8 7 6 10 10 C 1.38802 * 119.99703 * 180.02562 * 8 7 6 11 11 N 1.31628 * 119.99889 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00060 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47126 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47207 * 119.99881 * 12 10 8 15 15 H 1.48500 * 109.47134 * 239.99954 * 12 10 8 16 16 C 1.46498 * 119.99663 * 90.00103 * 3 2 1 17 17 H 1.08997 * 110.87600 * 2.39195 * 16 3 2 18 18 C 1.55140 * 110.98879 * 238.54689 * 16 3 2 19 19 C 1.54325 * 103.01814 * 206.22000 * 18 16 3 20 20 N 1.47447 * 107.23201 * 22.28042 * 19 18 16 21 21 C 1.46904 * 110.99438 * 123.26113 * 20 19 18 22 22 C 1.52996 * 109.46641 * 164.45868 * 21 20 19 23 23 C 1.54269 * 110.03047 * 291.96330 * 22 21 20 24 24 C 1.54892 * 104.19602 * 217.10729 * 23 22 21 25 25 C 1.54886 * 102.74873 * 37.94896 * 24 23 22 26 26 C 1.53876 * 110.03043 * 174.80200 * 22 21 20 27 27 C 1.47845 * 108.56544 * 0.99298 * 20 19 18 28 28 H 1.08998 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47238 * 300.00115 * 1 2 3 30 30 H 1.09005 * 109.47121 * 59.99674 * 1 2 3 31 31 H 1.09005 * 109.46768 * 240.00199 * 2 1 3 32 32 H 1.09005 * 109.47121 * 120.00326 * 2 1 3 33 33 H 1.09006 * 109.47252 * 299.99919 * 6 4 3 34 34 H 1.09005 * 109.47109 * 59.99760 * 6 4 3 35 35 H 0.96997 * 120.00129 * 180.02562 * 11 10 8 36 36 H 1.08997 * 110.70297 * 87.83847 * 18 16 3 37 37 H 1.09000 * 110.85768 * 324.66875 * 18 16 3 38 38 H 1.09003 * 109.88376 * 262.87991 * 19 18 16 39 39 H 1.08998 * 110.02363 * 141.76956 * 19 18 16 40 40 H 1.08995 * 109.46815 * 284.45139 * 21 20 19 41 41 H 1.08990 * 109.47325 * 44.45546 * 21 20 19 42 42 H 1.08998 * 110.02646 * 53.41090 * 22 21 20 43 43 H 1.09000 * 110.48869 * 335.79061 * 23 22 21 44 44 H 1.09005 * 110.48328 * 98.43318 * 23 22 21 45 45 H 1.08998 * 110.75703 * 279.62827 * 24 23 22 46 46 H 1.09005 * 110.75408 * 156.25938 * 24 23 22 47 47 H 1.09001 * 110.48796 * 203.37913 * 25 24 23 48 48 H 1.08992 * 110.49026 * 80.73214 * 25 24 23 49 49 H 1.08997 * 110.03474 * 238.56511 * 26 22 21 50 50 H 1.08998 * 110.03593 * 359.97438 * 26 22 21 51 51 H 1.09008 * 110.37204 * 94.73466 * 27 20 19 52 52 H 1.08999 * 110.37245 * 217.07081 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6469 3.1602 -1.1672 6 6 1.9913 1.3064 -2.4723 7 16 2.3829 2.4155 -3.8481 8 6 2.0097 1.3594 -5.2082 9 1 1.6553 0.3549 -5.0305 10 6 2.1721 1.8183 -6.5081 11 7 2.6045 3.0426 -6.7246 12 14 1.7758 0.6990 -7.9500 13 1 1.3107 -0.6166 -7.4422 14 1 0.7082 1.3165 -8.7771 15 1 2.9941 0.5072 -8.7772 16 6 2.2625 2.0717 1.2688 17 1 2.0736 1.4098 2.1138 18 6 1.4084 3.3627 1.3722 19 6 2.2331 4.2495 2.3287 20 7 3.6256 3.7672 2.2800 21 6 4.5439 4.8480 1.8969 22 6 5.9804 4.4372 2.2261 23 6 6.1712 4.3617 3.7551 24 6 7.6075 4.8939 3.9855 25 6 7.7186 6.0381 2.9475 26 6 6.9643 5.5031 1.7126 27 6 3.7013 2.6433 1.3224 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 2.6212 0.4186 -2.5303 34 1 0.9432 1.0127 -2.5299 35 1 2.7177 3.3634 -7.6329 36 1 0.4291 3.1438 1.7977 37 1 1.3057 3.8393 0.3973 38 1 1.8453 4.1607 3.3436 39 1 2.1892 5.2893 2.0048 40 1 4.4562 5.0371 0.8271 41 1 4.2895 5.7533 2.4480 42 1 6.2058 3.4719 1.7729 43 1 5.4436 4.9954 4.2622 44 1 6.0865 3.3310 4.0996 45 1 8.3444 4.1165 3.7839 46 1 7.7186 5.2796 4.9989 47 1 8.7630 6.2309 2.7025 48 1 7.2409 6.9425 3.3240 49 1 7.6675 5.0549 1.0107 50 1 6.4184 6.3128 1.2285 51 1 4.0039 3.0026 0.3387 52 1 4.3976 1.8853 1.6812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494882758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:31 Heat of formation + Delta-G solvation = -63.105921 kcal Electronic energy + Delta-G solvation = -28351.954585 eV Core-core repulsion = 24669.008719 eV Total energy + Delta-G solvation = -3682.945866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57124 -39.79781 -38.34099 -36.81942 -34.60994 -33.39739 -31.30776 -31.06442 -29.69950 -29.39681 -28.66965 -27.65696 -25.07783 -24.32724 -22.89215 -21.91617 -21.38295 -20.45967 -20.37424 -19.33716 -17.97826 -17.79028 -16.90813 -16.80831 -16.52234 -16.36333 -16.15304 -15.83612 -15.15152 -15.05370 -14.80859 -14.62593 -14.56992 -14.36180 -14.26405 -14.18471 -14.08680 -13.25009 -13.20578 -13.06881 -12.95305 -12.94285 -12.61597 -12.60532 -12.43507 -12.33038 -12.16670 -11.95907 -11.85139 -11.81686 -11.74152 -11.68940 -11.46981 -11.42094 -11.21759 -11.17851 -10.59838 -10.28311 -9.68372 -9.31278 -8.69054 -8.37167 -6.15077 1.23791 1.39118 1.43749 1.55011 1.57408 2.04622 2.25208 2.97075 3.01669 3.24654 3.56721 3.63918 3.75142 3.78251 3.82611 3.90758 4.02318 4.15873 4.18864 4.27634 4.30633 4.40106 4.42601 4.46295 4.50559 4.58827 4.59667 4.63423 4.70937 4.76649 4.81589 4.83613 4.87007 4.91425 4.96392 4.97736 4.99890 5.05236 5.09050 5.16583 5.21214 5.28646 5.36123 5.39400 5.42203 5.48121 5.57107 5.67550 5.97840 6.06079 6.17447 6.31876 7.04241 7.17309 8.72263 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.002787 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.176629 B =10045.841853 C =11674.173332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.599 5.599 4 C 0.533 3.467 5 O -0.550 6.550 6 C -0.124 4.124 7 S -0.151 6.151 8 C -0.544 4.544 9 H 0.081 0.919 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.998 3.002 13 H -0.256 1.256 14 H -0.274 1.274 15 H -0.274 1.274 16 C 0.147 3.853 17 H 0.135 0.865 18 C -0.152 4.152 19 C 0.049 3.951 20 N -0.513 5.513 21 C 0.063 3.937 22 C -0.082 4.082 23 C -0.095 4.095 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.126 4.126 27 C 0.027 3.973 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.271 0.729 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.007 0.993 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.039 0.961 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -3.922 24.736 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.332 5.332 4 C 0.320 3.680 5 O -0.428 6.428 6 C -0.275 4.275 7 S 0.076 5.924 8 C -0.691 4.691 9 H 0.099 0.901 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.820 3.180 13 H -0.180 1.180 14 H -0.199 1.199 15 H -0.199 1.199 16 C 0.043 3.957 17 H 0.153 0.847 18 C -0.191 4.191 19 C -0.079 4.079 20 N -0.236 5.236 21 C -0.066 4.066 22 C -0.101 4.101 23 C -0.133 4.133 24 C -0.163 4.163 25 C -0.157 4.157 26 C -0.165 4.165 27 C -0.102 4.102 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.057 0.943 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.497 -2.293 25.132 25.359 hybrid contribution -0.878 -1.094 -2.451 2.824 sum 1.619 -3.387 22.681 22.989 Atomic orbital electron populations 1.22182 0.95058 1.03431 1.01847 1.21914 0.95182 0.80295 1.04947 1.47920 1.65732 1.15333 1.04183 1.20024 0.76698 0.86015 0.85233 1.90643 1.45694 1.19103 1.87380 1.23414 1.05550 1.03046 0.95478 1.85539 1.87616 1.21980 0.97247 1.23201 1.51615 1.01659 0.92660 0.90098 1.26129 0.94178 0.97173 1.01690 1.70189 1.44332 1.17865 1.22402 0.84911 0.78125 0.78193 0.76766 1.17985 1.19896 1.19895 1.22288 0.93794 0.94075 0.85569 0.84688 1.23085 0.99928 0.96303 0.99826 1.22791 0.87661 0.97250 1.00215 1.63691 1.05597 1.07812 1.46517 1.22441 0.93193 0.93975 0.96949 1.21676 0.92807 0.98107 0.97556 1.22186 0.96467 1.01190 0.93461 1.22544 0.96810 0.97700 0.99197 1.22335 1.00105 0.98486 0.94792 1.22221 0.97782 0.98022 0.98445 1.23394 0.97457 0.94381 0.94945 0.89255 0.91601 0.94570 0.90267 0.86905 0.87946 0.88034 0.92018 0.88935 0.93516 0.88043 0.93741 0.97509 0.90269 0.92799 0.91460 0.91769 0.91686 0.90459 0.91240 0.91258 0.92511 0.92616 0.94298 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.24 71.98 0.74 -2.05 16 2 C 0.10 1.78 5.92 86.38 0.51 2.29 16 3 N -0.60 -15.67 2.56 -790.18 -2.02 -17.70 16 4 C 0.53 19.95 6.97 87.66 0.61 20.56 16 5 O -0.55 -25.05 11.91 -3.05 -0.04 -25.09 16 6 C -0.12 -5.04 4.71 71.23 0.34 -4.70 16 7 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 8 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 9 H 0.08 4.35 7.80 -2.92 -0.02 4.32 16 10 C 0.01 0.74 5.49 84.86 0.47 1.21 16 11 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 12 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 13 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.15 3.36 3.54 46.38 0.16 3.52 16 17 H 0.14 2.15 7.87 -2.39 -0.02 2.13 16 18 C -0.15 -3.75 6.30 31.78 0.20 -3.55 16 19 C 0.05 1.09 6.84 86.65 0.59 1.68 16 20 N -0.51 -12.30 4.95 -885.53 -4.38 -16.68 16 21 C 0.06 1.60 3.73 86.30 0.32 1.92 16 22 C -0.08 -1.85 2.99 -10.07 -0.03 -1.88 16 23 C -0.10 -1.71 6.19 31.67 0.20 -1.51 16 24 C -0.13 -1.92 6.91 31.88 0.22 -1.70 16 25 C -0.12 -1.98 6.83 31.67 0.22 -1.77 16 26 C -0.13 -2.70 6.46 31.32 0.20 -2.50 16 27 C 0.03 0.73 5.35 86.77 0.46 1.19 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.79 7.22 -2.38 -0.02 0.78 16 31 H 0.08 1.52 6.44 -2.38 -0.02 1.51 16 32 H 0.11 1.31 7.94 -2.38 -0.02 1.29 16 33 H 0.10 3.83 7.40 -2.39 -0.02 3.81 16 34 H 0.10 3.84 7.19 -2.39 -0.02 3.82 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.59 6.14 -2.39 -0.01 1.57 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.04 1.08 7.47 -2.39 -0.02 1.06 16 40 H 0.01 0.22 7.69 -2.39 -0.02 0.20 16 41 H 0.08 1.82 7.72 -2.39 -0.02 1.80 16 42 H 0.05 1.37 7.58 -2.39 -0.02 1.35 16 43 H 0.07 1.19 7.76 -2.39 -0.02 1.17 16 44 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.06 1.27 7.67 -2.39 -0.02 1.25 16 51 H 0.04 1.42 5.06 -2.38 -0.01 1.40 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -74.25 408.87 1.44 -72.81 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.87 Total: 24.47 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 5.86 Total: -17.94 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -6.12 Total: -90.49 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.04 Total: -25.09 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -74.25 1.44 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494882758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.702 kcal (2) G-P(sol) polarization free energy of solvation -74.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds