Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 S 1.81004 * 109.46896 * 179.97438 * 5 3 2 7 7 C 1.76205 * 99.99950 * 180.02562 * 6 5 3 8 8 H 1.07997 * 120.00211 * 359.97438 * 7 6 5 9 9 C 1.38799 * 119.99841 * 179.97438 * 7 6 5 10 10 N 1.31627 * 120.00169 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99783 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47431 * 59.99947 * 11 9 7 13 13 H 1.48498 * 109.46999 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47273 * 299.99809 * 11 9 7 15 15 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 16 16 C 1.53787 * 113.61053 * 39.13474 * 15 2 1 17 17 C 1.53959 * 87.01571 * 220.04775 * 16 15 2 18 18 N 1.46902 * 113.66220 * 139.93720 * 17 16 15 19 19 C 1.46897 * 111.00485 * 107.44345 * 18 17 16 20 20 C 1.53001 * 109.47479 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.46552 * 294.99639 * 20 19 18 22 22 C 1.53000 * 109.46919 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.47248 * 59.99797 * 22 21 20 24 24 C 1.52997 * 109.46956 * 300.00025 * 23 22 21 25 25 C 1.52998 * 109.47229 * 60.00305 * 24 23 22 26 26 C 1.53777 * 87.11258 * 25.36475 * 17 16 15 27 27 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 29 29 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 30 30 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 31 31 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 32 32 H 0.97001 * 120.00208 * 180.02562 * 10 9 7 33 33 H 1.08995 * 112.85252 * 170.32982 * 15 2 1 34 34 H 1.08992 * 113.61654 * 334.56584 * 16 15 2 35 35 H 1.09000 * 113.61456 * 105.47289 * 16 15 2 36 36 H 1.09003 * 113.61384 * 270.79673 * 17 16 15 37 37 H 1.00903 * 111.00289 * 343.47901 * 18 17 16 38 38 H 1.09007 * 109.46553 * 299.99568 * 19 18 17 39 39 H 1.08993 * 109.47292 * 59.99326 * 19 18 17 40 40 H 1.08997 * 109.47036 * 54.99495 * 20 19 18 41 41 H 1.09002 * 109.47012 * 300.00048 * 21 20 19 42 42 H 1.08991 * 109.47104 * 60.00123 * 21 20 19 43 43 H 1.09002 * 109.47254 * 299.99821 * 22 21 20 44 44 H 1.08997 * 109.47533 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47062 * 179.97438 * 23 22 21 46 46 H 1.09002 * 109.46973 * 59.99852 * 23 22 21 47 47 H 1.08997 * 109.47458 * 300.00099 * 24 23 22 48 48 H 1.09004 * 109.47053 * 179.97438 * 24 23 22 49 49 H 1.09006 * 109.47391 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.47533 * 59.99663 * 25 24 23 51 51 H 1.09003 * 113.61131 * 220.09066 * 26 17 16 52 52 H 1.09003 * 113.61547 * 89.18700 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0026 8 1 0.3762 5.0306 0.0024 9 6 1.9283 6.5081 0.0039 10 7 3.2266 6.7247 0.0047 11 14 0.7408 7.9500 0.0047 12 1 -0.1148 7.8861 1.2167 13 1 1.5069 9.2221 0.0055 14 1 -0.1138 7.8882 -1.2083 15 6 2.1975 -1.2687 -0.0006 16 6 1.5590 -2.3482 -0.8904 17 6 1.9075 -3.3558 0.2204 18 7 0.8573 -4.3544 0.4612 19 6 1.2586 -5.6733 -0.0462 20 6 0.1418 -6.6842 0.2217 21 6 -0.0298 -6.8663 1.7312 22 6 -1.1461 -7.8777 1.9992 23 6 -0.7820 -9.2201 1.3616 24 6 -0.6105 -9.0379 -0.1478 25 6 0.5059 -8.0265 -0.4158 26 6 1.8674 -2.1711 1.2001 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8901 0.5138 30 1 0.7585 2.5302 -0.8892 31 1 0.7590 2.5298 0.8908 32 1 3.5668 7.6331 0.0060 33 1 3.2666 -1.1401 -0.1692 34 1 0.4874 -2.2146 -1.0382 35 1 2.0975 -2.5207 -1.8223 36 1 2.8970 -3.7999 0.1123 37 1 -0.0193 -4.0623 0.0558 38 1 1.4409 -5.6097 -1.1190 39 1 2.1693 -5.9951 0.4587 40 1 -0.7904 -6.3182 -0.2084 41 1 0.9025 -7.2323 2.1613 42 1 -0.2888 -5.9100 2.1854 43 1 -2.0786 -7.5122 1.5690 44 1 -1.2682 -8.0079 3.0744 45 1 -1.5771 -9.9407 1.5529 46 1 0.1504 -9.5856 1.7918 47 1 -1.5428 -8.6723 -0.5780 48 1 -0.3506 -9.9941 -0.6020 49 1 0.6279 -7.8964 -1.4911 50 1 1.4384 -8.3921 0.0144 51 1 2.6547 -2.2008 1.9534 52 1 0.8803 -1.9890 1.6249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508096853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -60.010273 kcal Electronic energy + Delta-G solvation = -26779.951638 eV Core-core repulsion = 23097.140009 eV Total energy + Delta-G solvation = -3682.811628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39907 -39.89095 -39.19021 -36.27300 -34.70551 -34.58484 -31.70555 -31.44639 -30.48556 -27.96429 -27.68475 -26.65580 -25.99263 -24.05634 -23.28533 -22.01371 -21.14222 -20.48931 -20.03723 -19.56781 -18.26080 -17.26702 -16.87992 -16.83945 -16.65215 -16.34379 -15.94060 -15.66970 -15.32685 -15.07829 -14.86366 -14.79584 -14.54687 -14.49615 -14.17549 -13.69472 -13.49845 -13.32779 -13.21610 -13.16317 -13.11994 -12.98017 -12.86751 -12.84777 -12.66390 -12.59764 -12.04235 -11.96815 -11.91110 -11.76903 -11.69870 -11.60146 -11.26770 -11.12858 -10.90211 -10.84771 -10.75385 -10.27646 -9.62328 -9.22376 -8.68115 -8.34379 -6.13375 1.25769 1.44176 1.46075 1.55636 1.56006 2.12312 2.27803 2.99585 3.19771 3.26070 3.52969 3.65519 3.77054 3.81074 3.92414 3.96230 3.97486 4.02628 4.19554 4.27579 4.30415 4.43775 4.46156 4.51994 4.57628 4.63133 4.66737 4.68280 4.72120 4.75898 4.77324 4.83028 4.85908 4.88195 4.94867 5.01119 5.08658 5.09326 5.21103 5.25092 5.32343 5.34684 5.38085 5.41084 5.48620 5.59477 5.64592 5.67073 6.13899 6.19357 6.30505 6.53629 7.06399 7.14805 8.74675 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034800 B = 0.001574 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.400363 B =17787.966279 C =18161.735124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.597 5.597 3 C 0.529 3.471 4 O -0.569 6.569 5 C -0.123 4.123 6 S -0.155 6.155 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.014 3.986 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.261 1.261 13 H -0.279 1.279 14 H -0.262 1.262 15 C 0.107 3.893 16 C -0.160 4.160 17 C 0.085 3.915 18 N -0.673 5.673 19 C 0.065 3.935 20 C -0.078 4.078 21 C -0.102 4.102 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.131 4.131 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.271 0.729 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.349 0.651 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.059 0.941 51 H 0.061 0.939 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.981 -33.048 -0.038 35.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.330 5.330 3 C 0.316 3.684 4 O -0.448 6.448 5 C -0.274 4.274 6 S 0.072 5.928 7 C -0.695 4.695 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.186 1.186 13 H -0.204 1.204 14 H -0.186 1.186 15 C 0.003 3.997 16 C -0.200 4.200 17 C -0.026 4.026 18 N -0.303 5.303 19 C -0.064 4.064 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.171 4.171 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.168 0.832 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.883 -33.099 0.607 34.848 hybrid contribution -1.432 1.320 -0.903 2.146 sum -12.315 -31.779 -0.296 34.083 Atomic orbital electron populations 1.22060 0.77185 1.04738 1.03292 1.47794 1.08203 1.04294 1.72710 1.20209 0.87316 0.85647 0.75193 1.90662 1.15806 1.87548 1.50798 1.23380 1.02672 0.95002 1.06308 1.85595 1.12786 0.97375 1.97040 1.23167 0.94618 0.92630 1.59090 0.89872 1.26139 0.97611 1.01684 0.93653 1.70182 1.14172 1.22529 1.47890 0.84993 0.77581 0.75821 0.79531 1.18598 1.20385 1.18607 1.22536 0.96973 0.81141 0.99020 1.24119 1.02483 0.95018 0.98370 1.22650 0.96082 0.90070 0.93812 1.60369 1.05136 1.01809 1.62966 1.22039 0.98394 0.88643 0.97339 1.21100 0.97989 0.94326 0.96239 1.21421 0.98131 0.99036 0.95358 1.21557 0.98659 0.95386 1.00233 1.21546 1.01365 0.97212 0.95675 1.21506 0.98809 0.99061 0.96119 1.21544 0.98671 0.94596 1.00320 1.23494 1.02892 0.94083 0.96590 0.91029 0.90626 0.88164 0.87529 0.87426 0.91990 0.89222 0.87607 0.91093 0.88409 0.83172 0.94917 0.91622 0.91198 0.93148 0.91655 0.92131 0.92316 0.91909 0.92407 0.92014 0.91737 0.91826 0.92206 0.91978 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 8.84 127.77 1.13 2.36 16 2 N -0.60 -16.23 3.08 -819.63 -2.53 -18.76 16 3 C 0.53 20.61 7.69 87.66 0.67 21.28 16 4 O -0.57 -27.59 15.33 -3.02 -0.05 -27.64 16 5 C -0.12 -5.02 4.71 71.24 0.34 -4.68 16 6 S -0.16 -8.80 20.57 -56.49 -1.16 -9.96 16 7 C -0.55 -31.55 9.50 67.95 0.65 -30.91 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 C 0.01 0.80 5.49 84.86 0.47 1.26 16 10 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 11 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 15 C 0.11 2.53 4.21 45.52 0.19 2.72 16 16 C -0.16 -2.48 7.16 31.18 0.22 -2.26 16 17 C 0.09 1.23 4.18 45.50 0.19 1.42 16 18 N -0.67 -7.84 6.07 -488.54 -2.97 -10.81 16 19 C 0.06 0.70 4.92 86.30 0.42 1.12 16 20 C -0.08 -0.75 2.33 -10.79 -0.03 -0.77 16 21 C -0.10 -1.14 5.09 30.60 0.16 -0.99 16 22 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 23 C -0.12 -1.11 5.92 30.59 0.18 -0.92 16 24 C -0.12 -1.01 5.92 30.59 0.18 -0.82 16 25 C -0.11 -1.02 5.20 30.59 0.16 -0.86 16 26 C -0.13 -2.44 7.41 31.12 0.23 -2.21 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.40 6.44 -2.39 -0.02 1.38 16 29 H 0.10 1.21 6.33 -2.38 -0.02 1.20 16 30 H 0.11 3.95 8.11 -2.39 -0.02 3.93 16 31 H 0.11 3.99 7.40 -2.39 -0.02 3.97 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.09 2.67 7.21 -2.39 -0.02 2.65 16 34 H 0.11 1.29 6.50 -2.39 -0.02 1.28 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 1.46 7.87 -2.39 -0.02 1.44 16 37 H 0.35 3.32 8.20 -89.69 -0.74 2.59 16 38 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.86 7.75 -2.39 -0.02 0.84 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 50 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.10 1.67 6.82 -2.39 -0.02 1.65 16 Total: -1.00 -75.14 414.54 1.10 -74.04 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.15 Total: 18.93 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.34 Total: -15.32 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -5.21 Total: -85.75 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -75.14 1.10 -74.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508096853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.033 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds