Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 C 1.53005 * 109.46607 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47389 * 294.99831 * 4 3 2 6 6 F 1.39903 * 109.46847 * 175.00190 * 4 3 2 7 7 C 1.52997 * 109.47189 * 55.00607 * 4 3 2 8 8 N 1.46500 * 109.47037 * 184.86075 * 7 4 3 9 9 C 1.36744 * 127.13584 * 276.77893 * 8 7 4 10 10 C 1.50697 * 126.34433 * 359.96512 * 9 8 7 11 11 C 1.53785 * 113.61372 * 219.13990 * 10 9 8 12 12 C 1.53955 * 87.01982 * 220.05132 * 11 10 9 13 13 C 1.53775 * 113.61390 * 121.53364 * 10 9 8 14 14 N 1.30293 * 107.30361 * 179.83580 * 9 8 7 15 15 N 1.28531 * 110.05541 * 0.44253 * 14 9 8 16 16 C 1.31223 * 109.85879 * 359.71709 * 15 14 9 17 17 N 1.38573 * 126.47321 * 180.02562 * 16 15 14 18 18 C 1.46897 * 110.99920 * 116.15212 * 17 16 15 19 19 C 1.46908 * 110.99779 * 352.20138 * 17 16 15 20 20 H 1.08993 * 109.47238 * 59.99868 * 19 17 16 21 21 C 1.52997 * 109.46839 * 299.99597 * 19 17 16 22 22 C 1.50707 * 109.46723 * 179.97438 * 19 17 16 23 23 H 1.07991 * 120.00139 * 359.97438 * 22 19 17 24 24 C 1.37882 * 119.99476 * 179.97438 * 22 19 17 25 25 N 1.31510 * 120.00366 * 0.02562 * 24 22 19 26 26 Si 1.86798 * 119.99594 * 179.97438 * 24 22 19 27 27 H 1.48499 * 109.47434 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47034 * 120.00437 * 26 24 22 29 29 H 1.48500 * 109.47297 * 240.00052 * 26 24 22 30 30 H 1.09006 * 109.47117 * 59.99441 * 1 2 3 31 31 H 1.08989 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46966 * 300.00316 * 1 2 3 33 33 H 1.09000 * 109.47204 * 60.00578 * 3 2 1 34 34 H 1.08997 * 109.47406 * 299.99876 * 3 2 1 35 35 H 1.08998 * 109.47209 * 64.85938 * 7 4 3 36 36 H 1.08997 * 109.46873 * 304.85734 * 7 4 3 37 37 H 1.08998 * 112.85400 * 350.33033 * 10 9 8 38 38 H 1.09005 * 113.61280 * 334.56350 * 11 10 9 39 39 H 1.09002 * 113.61953 * 105.46865 * 11 10 9 40 40 H 1.09001 * 113.53532 * 270.80907 * 12 11 10 41 41 H 1.08996 * 113.74404 * 139.94362 * 12 11 10 42 42 H 1.09002 * 113.61470 * 254.52807 * 13 10 9 43 43 H 1.08996 * 113.61525 * 25.34150 * 13 10 9 44 44 H 1.09000 * 109.47022 * 70.91846 * 18 17 16 45 45 H 1.09007 * 109.47073 * 190.91900 * 18 17 16 46 46 H 1.09002 * 109.47656 * 310.91614 * 18 17 16 47 47 H 1.09012 * 109.46765 * 180.02562 * 21 19 17 48 48 H 1.09001 * 109.47659 * 299.99947 * 21 19 17 49 49 H 1.09001 * 109.47278 * 60.00838 * 21 19 17 50 50 H 0.96995 * 120.00200 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8631 0.7231 0.9322 6 9 4.1042 2.4576 -0.1143 7 6 3.9790 0.3194 -1.1807 8 7 5.4271 0.1075 -1.1143 9 6 6.4062 0.9501 -1.5630 10 6 6.1987 2.2866 -2.2275 11 6 7.1747 2.5574 -3.3847 12 6 7.2574 4.0059 -2.8697 13 6 6.8725 3.4538 -1.4869 14 7 7.5516 0.3843 -1.3071 15 7 7.3641 -0.7538 -0.7400 16 6 6.0785 -0.9743 -0.5971 17 7 5.4929 -2.0939 -0.0281 18 6 4.7519 -1.7390 1.1896 19 6 6.4973 -3.1294 0.2498 20 1 7.2433 -2.7361 0.9403 21 6 7.1787 -3.5425 -1.0563 22 6 5.8248 -4.3285 0.8673 23 1 4.7583 -4.3218 1.0367 24 6 6.5714 -5.4341 1.2158 25 7 7.8702 -5.4420 1.0100 26 14 5.7380 -6.9200 1.9818 27 1 4.2811 -6.6608 2.1070 28 1 5.9564 -8.1092 1.1196 29 1 6.3138 -7.1717 3.3273 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.7279 0.8229 -2.1143 36 1 3.4687 -0.6428 -1.1381 37 1 5.1560 2.4752 -2.4827 38 1 8.1137 2.0101 -3.3011 39 1 6.7183 2.4689 -4.3706 40 1 6.5044 4.6651 -3.3017 41 1 8.2614 4.4284 -2.9072 42 1 6.1725 4.0881 -0.9430 43 1 7.7277 3.1519 -0.8824 44 1 3.8557 -1.1804 0.9197 45 1 4.4677 -2.6480 1.7199 46 1 5.3825 -1.1253 1.8330 47 1 7.9236 -4.3112 -0.8501 48 1 6.4327 -3.9359 -1.7468 49 1 7.6652 -2.6751 -1.5024 50 1 8.3954 -6.2196 1.2556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518762159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = 26.109894 kcal Electronic energy + Delta-G solvation = -31980.185079 eV Core-core repulsion = 27767.187476 eV Total energy + Delta-G solvation = -4212.997603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.03732 -42.44632 -38.55850 -38.39603 -36.95834 -35.18684 -32.80936 -31.46735 -29.69981 -29.20695 -27.42813 -26.33061 -25.82062 -25.57926 -24.94367 -24.21765 -22.38661 -21.87918 -20.64935 -19.70960 -18.76138 -17.64699 -17.27270 -16.70368 -16.29107 -16.05177 -15.78891 -15.54502 -15.45498 -15.18009 -14.92137 -14.70438 -14.35118 -14.01698 -13.62192 -13.39760 -13.04167 -12.82216 -12.55228 -12.43694 -12.33939 -12.18049 -11.92836 -11.89388 -11.69681 -11.26072 -11.10361 -10.98977 -10.97610 -10.76906 -10.59842 -10.46345 -10.39819 -10.26799 -10.19494 -10.10712 -10.03036 -9.75146 -9.57749 -9.20629 -8.57410 -8.41208 -7.30827 -6.01907 -4.09454 2.24962 2.63046 3.11004 3.28900 3.36648 3.39529 3.45463 4.05902 4.26407 4.37384 4.42717 4.49395 4.54042 4.66187 4.69247 4.70481 4.87506 4.92200 4.96059 4.98843 5.01878 5.08075 5.29683 5.36224 5.37115 5.42047 5.49582 5.65929 5.73145 5.83968 5.87979 5.93448 6.01023 6.02096 6.11142 6.28669 6.42227 6.53402 6.58638 6.64384 6.97370 7.04786 7.23384 7.35787 7.50377 7.75237 7.77124 8.01923 8.30739 8.49188 8.92736 9.44811 9.55079 11.04320 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004166 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.894186 B = 6719.276065 C = 9001.774008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.041 3.959 4 C 0.076 3.924 5 H 0.101 0.899 6 F -0.195 7.195 7 C 0.093 3.907 8 N -0.489 5.489 9 C 0.168 3.832 10 C -0.018 4.018 11 C -0.124 4.124 12 C -0.141 4.141 13 C -0.119 4.119 14 N -0.285 5.285 15 N -0.314 5.314 16 C 0.384 3.616 17 N -0.455 5.455 18 C 0.030 3.970 19 C 0.230 3.770 20 H 0.022 0.978 21 C -0.138 4.138 22 C -0.517 4.517 23 H 0.066 0.934 24 C 0.064 3.936 25 N -0.882 5.882 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.087 0.913 48 H 0.023 0.977 49 H 0.035 0.965 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 18.206 -4.757 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.298 6.298 3 C -0.037 4.037 4 C 0.039 3.961 5 H 0.119 0.881 6 F -0.175 7.175 7 C -0.032 4.032 8 N -0.186 5.186 9 C -0.099 4.099 10 C -0.039 4.039 11 C -0.162 4.162 12 C -0.179 4.179 13 C -0.158 4.158 14 N -0.123 5.123 15 N -0.158 5.158 16 C 0.029 3.971 17 N -0.180 5.180 18 C -0.118 4.118 19 C 0.126 3.874 20 H 0.040 0.960 21 C -0.196 4.196 22 C -0.555 4.555 23 H 0.084 0.916 24 C -0.139 4.139 25 N -0.520 5.520 26 Si 0.726 3.274 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.042 0.958 47 H 0.106 0.894 48 H 0.042 0.958 49 H 0.054 0.946 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.051 17.461 -4.963 21.789 hybrid contribution -1.709 -0.229 0.828 1.912 sum -13.760 17.233 -4.135 22.437 Atomic orbital electron populations 1.22810 0.79866 1.03520 1.00101 1.87901 1.20600 1.25853 1.95494 1.22919 0.91961 0.86435 1.02358 1.21922 0.92282 0.80332 1.01608 0.88126 1.92864 1.85721 1.41474 1.97482 1.22315 0.78649 1.03613 0.98601 1.46152 1.07206 1.17177 1.48044 1.24345 0.84687 0.95959 1.04919 1.20837 0.99937 0.86644 0.96494 1.23000 1.00173 0.96423 0.96605 1.22829 1.01864 0.96372 0.96803 1.22900 1.00699 0.95624 0.96560 1.73872 1.21158 1.02747 1.14512 1.74850 1.11213 1.09398 1.20322 1.23226 0.87775 0.87040 0.99102 1.59075 1.28903 1.03228 1.26779 1.22541 0.96246 1.02746 0.90239 1.19343 0.87170 0.86089 0.94791 0.96015 1.21887 1.00292 1.00980 0.96481 1.21108 0.94528 0.99239 1.40638 0.91615 1.24897 0.94821 0.98413 0.95724 1.69936 1.05170 1.29947 1.46965 0.86437 0.79526 0.82591 0.78801 1.19729 1.20960 1.21047 0.93821 0.88859 0.93784 0.91389 0.91673 0.88476 0.85333 0.88463 0.88551 0.91482 0.90360 0.91046 0.91278 0.89243 0.92684 0.87895 0.95839 0.89442 0.95775 0.94619 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.72 9.74 -35.23 -0.34 -4.07 16 3 C 0.04 0.35 5.89 37.16 0.22 0.57 16 4 C 0.08 0.85 3.59 -26.73 -0.10 0.75 16 5 H 0.10 1.27 6.37 -51.93 -0.33 0.94 16 6 F -0.19 -2.30 15.72 2.25 0.04 -2.26 16 7 C 0.09 1.19 4.66 -4.04 -0.02 1.17 16 8 N -0.49 -8.45 2.80 -114.09 -0.32 -8.77 16 9 C 0.17 2.90 6.87 -154.01 -1.06 1.84 16 10 C -0.02 -0.23 3.21 -90.96 -0.29 -0.52 16 11 C -0.12 -1.42 7.64 -25.82 -0.20 -1.62 16 12 C -0.14 -1.34 8.09 -25.83 -0.21 -1.55 16 13 C -0.12 -1.38 7.63 -25.92 -0.20 -1.58 16 14 N -0.28 -6.00 11.83 32.99 0.39 -5.61 16 15 N -0.31 -7.47 9.32 30.31 0.28 -7.19 16 16 C 0.38 8.26 6.43 -318.88 -2.05 6.21 16 17 N -0.46 -10.14 4.61 -176.08 -0.81 -10.95 16 18 C 0.03 0.56 8.85 60.06 0.53 1.09 16 19 C 0.23 6.04 1.71 -68.86 -0.12 5.92 16 20 H 0.02 0.65 8.03 -51.93 -0.42 0.23 16 21 C -0.14 -3.69 8.78 37.16 0.33 -3.37 16 22 C -0.52 -13.94 7.73 -34.44 -0.27 -14.21 16 23 H 0.07 1.72 6.51 -52.49 -0.34 1.38 16 24 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 25 N -0.88 -25.44 11.32 55.43 0.63 -24.81 16 26 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 1.02 7.54 -51.93 -0.39 0.63 16 36 H 0.13 1.76 6.79 -51.93 -0.35 1.41 16 37 H 0.10 1.06 7.14 -51.93 -0.37 0.69 16 38 H 0.10 1.30 7.82 -51.93 -0.41 0.90 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 44 H 0.05 0.87 4.96 -51.93 -0.26 0.61 16 45 H 0.10 2.05 5.84 -51.93 -0.30 1.75 16 46 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 47 H 0.09 2.51 6.07 -51.92 -0.32 2.20 16 48 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.03 0.94 5.72 -51.93 -0.30 0.64 16 50 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -32.64 392.22 -9.64 -42.28 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.98 Total: 1.80 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.41 Total: -2.28 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.17 Total: -57.34 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.34 Total: -4.07 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.64 -9.64 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518762159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.389 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds