Wall clock time and date at job start Sat Apr 11 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 C 1.53005 * 109.46607 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47389 * 294.99831 * 4 3 2 6 6 F 1.39903 * 109.46847 * 175.00190 * 4 3 2 7 7 C 1.52997 * 109.47189 * 55.00607 * 4 3 2 8 8 N 1.46500 * 109.47037 * 184.86075 * 7 4 3 9 9 C 1.36744 * 127.13584 * 276.77893 * 8 7 4 10 10 C 1.50697 * 126.34433 * 359.96512 * 9 8 7 11 11 C 1.53785 * 113.61372 * 219.13990 * 10 9 8 12 12 C 1.53955 * 87.01982 * 220.05132 * 11 10 9 13 13 C 1.53775 * 113.61390 * 121.53364 * 10 9 8 14 14 N 1.30293 * 107.30361 * 179.83580 * 9 8 7 15 15 N 1.28531 * 110.05541 * 0.44253 * 14 9 8 16 16 C 1.31223 * 109.85879 * 359.71709 * 15 14 9 17 17 N 1.38573 * 126.47321 * 180.02562 * 16 15 14 18 18 C 1.46897 * 110.99920 * 116.15212 * 17 16 15 19 19 C 1.46908 * 110.99779 * 352.20138 * 17 16 15 20 20 H 1.08993 * 109.47238 * 59.99868 * 19 17 16 21 21 C 1.52997 * 109.46839 * 299.99597 * 19 17 16 22 22 C 1.50707 * 109.46723 * 179.97438 * 19 17 16 23 23 H 1.07991 * 120.00139 * 359.97438 * 22 19 17 24 24 C 1.37882 * 119.99476 * 179.97438 * 22 19 17 25 25 N 1.31510 * 120.00366 * 0.02562 * 24 22 19 26 26 Si 1.86798 * 119.99594 * 179.97438 * 24 22 19 27 27 H 1.48499 * 109.47434 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47034 * 120.00437 * 26 24 22 29 29 H 1.48500 * 109.47297 * 240.00052 * 26 24 22 30 30 H 1.09006 * 109.47117 * 59.99441 * 1 2 3 31 31 H 1.08989 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46966 * 300.00316 * 1 2 3 33 33 H 1.09000 * 109.47204 * 60.00578 * 3 2 1 34 34 H 1.08997 * 109.47406 * 299.99876 * 3 2 1 35 35 H 1.08998 * 109.47209 * 64.85938 * 7 4 3 36 36 H 1.08997 * 109.46873 * 304.85734 * 7 4 3 37 37 H 1.08998 * 112.85400 * 350.33033 * 10 9 8 38 38 H 1.09005 * 113.61280 * 334.56350 * 11 10 9 39 39 H 1.09002 * 113.61953 * 105.46865 * 11 10 9 40 40 H 1.09001 * 113.53532 * 270.80907 * 12 11 10 41 41 H 1.08996 * 113.74404 * 139.94362 * 12 11 10 42 42 H 1.09002 * 113.61470 * 254.52807 * 13 10 9 43 43 H 1.08996 * 113.61525 * 25.34150 * 13 10 9 44 44 H 1.09000 * 109.47022 * 70.91846 * 18 17 16 45 45 H 1.09007 * 109.47073 * 190.91900 * 18 17 16 46 46 H 1.09002 * 109.47656 * 310.91614 * 18 17 16 47 47 H 1.09012 * 109.46765 * 180.02562 * 21 19 17 48 48 H 1.09001 * 109.47659 * 299.99947 * 21 19 17 49 49 H 1.09001 * 109.47278 * 60.00838 * 21 19 17 50 50 H 0.96995 * 120.00200 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8631 0.7231 0.9322 6 9 4.1042 2.4576 -0.1143 7 6 3.9790 0.3194 -1.1807 8 7 5.4271 0.1075 -1.1143 9 6 6.4062 0.9501 -1.5630 10 6 6.1987 2.2866 -2.2275 11 6 7.1747 2.5574 -3.3847 12 6 7.2574 4.0059 -2.8697 13 6 6.8725 3.4538 -1.4869 14 7 7.5516 0.3843 -1.3071 15 7 7.3641 -0.7538 -0.7400 16 6 6.0785 -0.9743 -0.5971 17 7 5.4929 -2.0939 -0.0281 18 6 4.7519 -1.7390 1.1896 19 6 6.4973 -3.1294 0.2498 20 1 7.2433 -2.7361 0.9403 21 6 7.1787 -3.5425 -1.0563 22 6 5.8248 -4.3285 0.8673 23 1 4.7583 -4.3218 1.0367 24 6 6.5714 -5.4341 1.2158 25 7 7.8702 -5.4420 1.0100 26 14 5.7380 -6.9200 1.9818 27 1 4.2811 -6.6608 2.1070 28 1 5.9564 -8.1092 1.1196 29 1 6.3138 -7.1717 3.3273 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.7279 0.8229 -2.1143 36 1 3.4687 -0.6428 -1.1381 37 1 5.1560 2.4752 -2.4827 38 1 8.1137 2.0101 -3.3011 39 1 6.7183 2.4689 -4.3706 40 1 6.5044 4.6651 -3.3017 41 1 8.2614 4.4284 -2.9072 42 1 6.1725 4.0881 -0.9430 43 1 7.7277 3.1519 -0.8824 44 1 3.8557 -1.1804 0.9197 45 1 4.4677 -2.6480 1.7199 46 1 5.3825 -1.1253 1.8330 47 1 7.9236 -4.3112 -0.8501 48 1 6.4327 -3.9359 -1.7468 49 1 7.6652 -2.6751 -1.5024 50 1 8.3954 -6.2196 1.2556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518762159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:05 Heat of formation + Delta-G solvation = 7.617648 kcal Electronic energy + Delta-G solvation = -31980.986963 eV Core-core repulsion = 27767.187476 eV Total energy + Delta-G solvation = -4213.799487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.94123 -43.96255 -39.61185 -39.06200 -38.66449 -36.47965 -34.82789 -32.45670 -31.36827 -31.06469 -28.36477 -27.66843 -26.76878 -26.53049 -26.48736 -25.90460 -23.72229 -23.19745 -21.96788 -21.25129 -19.93682 -18.85577 -18.25283 -18.11879 -17.74665 -17.18807 -16.87534 -16.81851 -16.60221 -16.27650 -16.14461 -15.87143 -15.83390 -15.31549 -14.99490 -14.72621 -14.41441 -13.89911 -13.87588 -13.55379 -13.39919 -13.34305 -13.18461 -13.01016 -12.86926 -12.82315 -12.72300 -12.41917 -12.34516 -12.26121 -12.09316 -12.05531 -11.89431 -11.76007 -11.51438 -11.38352 -11.26562 -11.05095 -10.99331 -10.68896 -10.57833 -10.35459 -9.05205 -8.12747 -6.28442 0.80183 1.26007 1.44842 1.45837 1.58329 1.88223 2.41162 2.46904 2.91763 3.15335 3.19567 3.32065 3.44840 3.59374 3.68584 3.75391 3.78747 3.98992 4.02197 4.06879 4.19698 4.28221 4.38964 4.39368 4.43960 4.49985 4.59168 4.62865 4.69945 4.75077 4.81652 4.83290 4.93049 4.94536 4.97012 4.99928 5.08901 5.12836 5.15771 5.22297 5.27803 5.41719 5.55682 5.63295 5.64549 5.92231 5.99032 6.09346 6.15907 6.57277 6.81545 7.40300 7.88382 8.94417 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004166 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.894186 B = 6719.276065 C = 9001.774008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.049 3.951 4 C 0.081 3.919 5 H 0.081 0.919 6 F -0.196 7.196 7 C 0.084 3.916 8 N -0.481 5.481 9 C 0.192 3.808 10 C -0.024 4.024 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.120 4.120 14 N -0.327 5.327 15 N -0.364 5.364 16 C 0.365 3.635 17 N -0.454 5.454 18 C 0.036 3.964 19 C 0.242 3.758 20 H -0.025 1.025 21 C -0.121 4.121 22 C -0.527 4.527 23 H 0.075 0.925 24 C 0.012 3.988 25 N -0.919 5.919 26 Si 0.971 3.029 27 H -0.258 1.258 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.012 0.988 47 H 0.062 0.938 48 H 0.023 0.977 49 H 0.031 0.969 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 20.222 -5.596 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C -0.029 4.029 4 C 0.043 3.957 5 H 0.099 0.901 6 F -0.177 7.177 7 C -0.038 4.038 8 N -0.177 5.177 9 C -0.076 4.076 10 C -0.045 4.045 11 C -0.165 4.165 12 C -0.158 4.158 13 C -0.159 4.159 14 N -0.164 5.164 15 N -0.207 5.207 16 C 0.008 3.992 17 N -0.178 5.178 18 C -0.111 4.111 19 C 0.137 3.863 20 H -0.008 1.008 21 C -0.180 4.180 22 C -0.565 4.565 23 H 0.093 0.907 24 C -0.187 4.187 25 N -0.558 5.558 26 Si 0.796 3.204 27 H -0.181 1.181 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.031 0.969 47 H 0.081 0.919 48 H 0.042 0.958 49 H 0.049 0.951 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.573 19.515 -5.807 25.634 hybrid contribution -0.626 -0.713 1.049 1.414 sum -16.199 18.802 -4.758 25.270 Atomic orbital electron populations 1.22965 0.78321 1.04012 1.01451 1.87854 1.22326 1.26741 1.95769 1.22898 0.89333 0.86341 1.04329 1.21835 0.94458 0.79701 0.99666 0.90090 1.92858 1.86068 1.41420 1.97374 1.22712 0.75666 1.04258 1.01166 1.46345 1.09036 1.15526 1.46780 1.25315 0.83658 0.96584 1.02046 1.21324 1.02055 0.84123 0.96973 1.22983 0.98634 0.97700 0.97190 1.22802 1.03192 0.95340 0.94500 1.22859 0.99953 0.95400 0.97665 1.73782 1.23377 1.02705 1.16582 1.74702 1.13169 1.11114 1.21753 1.23080 0.87913 0.88115 1.00098 1.59010 1.27609 1.03340 1.27882 1.22562 0.96887 1.02496 0.89123 1.18940 0.87089 0.87127 0.93157 1.00754 1.21670 0.99533 0.99893 0.96862 1.21384 0.94982 0.99495 1.40614 0.90665 1.25818 0.95314 1.01515 0.96077 1.70096 1.06836 1.30865 1.47979 0.85311 0.79113 0.78384 0.77631 1.18120 1.20799 1.20758 0.92207 0.88924 0.92675 0.89886 0.89199 0.85209 0.85961 0.85425 0.91428 0.89437 0.87302 0.90522 0.89732 0.92043 0.89130 0.88775 0.96885 0.91909 0.95833 0.95052 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.83 9.74 -148.98 -1.45 -8.28 16 3 C 0.05 0.64 5.89 71.98 0.42 1.06 16 4 C 0.08 1.60 3.59 30.59 0.11 1.71 16 5 H 0.08 1.93 6.37 -2.39 -0.02 1.92 16 6 F -0.20 -4.04 15.72 44.97 0.71 -3.34 16 7 C 0.08 1.98 4.66 86.38 0.40 2.38 16 8 N -0.48 -16.43 2.80 -514.87 -1.44 -17.87 16 9 C 0.19 6.60 6.87 137.64 0.95 7.54 16 10 C -0.02 -0.56 3.21 -11.01 -0.04 -0.59 16 11 C -0.13 -2.65 7.64 31.18 0.24 -2.42 16 12 C -0.12 -1.90 8.09 31.18 0.25 -1.65 16 13 C -0.12 -2.54 7.63 31.12 0.24 -2.30 16 14 N -0.33 -14.40 11.83 -49.54 -0.59 -14.98 16 15 N -0.36 -18.30 9.32 -58.01 -0.54 -18.84 16 16 C 0.37 16.23 6.43 260.11 1.67 17.90 16 17 N -0.45 -20.84 4.61 -710.98 -3.28 -24.12 16 18 C 0.04 1.40 8.85 127.69 1.13 2.53 16 19 C 0.24 13.36 1.71 44.17 0.08 13.44 16 20 H -0.03 -1.60 8.03 -2.39 -0.02 -1.62 16 21 C -0.12 -6.83 8.78 71.98 0.63 -6.20 16 22 C -0.53 -29.07 7.73 25.60 0.20 -28.87 16 23 H 0.08 3.93 6.51 -2.92 -0.02 3.91 16 24 C 0.01 0.68 5.30 84.66 0.45 1.13 16 25 N -0.92 -54.96 11.32 21.45 0.24 -54.72 16 26 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 30 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.13 2.20 7.54 -2.39 -0.02 2.19 16 36 H 0.12 3.12 6.79 -2.39 -0.02 3.10 16 37 H 0.13 2.21 7.14 -2.39 -0.02 2.19 16 38 H 0.07 1.83 7.82 -2.38 -0.02 1.82 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 44 H 0.09 2.82 4.96 -2.39 -0.01 2.81 16 45 H 0.09 3.80 5.84 -2.38 -0.01 3.78 16 46 H 0.01 0.51 8.04 -2.39 -0.02 0.49 16 47 H 0.06 3.82 6.07 -2.38 -0.01 3.80 16 48 H 0.02 1.25 8.14 -2.39 -0.02 1.24 16 49 H 0.03 1.75 5.72 -2.39 -0.01 1.74 16 50 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -75.98 392.22 4.60 -71.38 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.94 Total: 18.16 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 7.98 Total: 7.21 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -5.60 Total: -130.53 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -1.45 Total: -8.28 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.71 Total: -3.34 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -75.98 4.60 -71.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518762159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.996 kcal (2) G-P(sol) polarization free energy of solvation -75.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds