Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00111 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46701 * 294.99104 * 4 3 2 6 6 F 1.39901 * 109.46673 * 174.99623 * 4 3 2 7 7 C 1.52998 * 109.47581 * 54.99797 * 4 3 2 8 8 N 1.46494 * 109.47552 * 185.00096 * 7 4 3 9 9 C 1.36738 * 127.13591 * 273.02146 * 8 7 4 10 10 C 1.50707 * 126.34737 * 359.96142 * 9 8 7 11 11 C 1.53778 * 113.61403 * 219.14081 * 10 9 8 12 12 C 1.53956 * 87.01611 * 220.04856 * 11 10 9 13 13 C 1.53777 * 113.61415 * 121.52836 * 10 9 8 14 14 N 1.30300 * 107.30762 * 179.82846 * 9 8 7 15 15 N 1.28526 * 110.05034 * 0.44673 * 14 9 8 16 16 C 1.31222 * 109.86126 * 359.71217 * 15 14 9 17 17 N 1.38578 * 126.47056 * 179.97438 * 16 15 14 18 18 C 1.46897 * 111.00170 * 293.37221 * 17 16 15 19 19 C 1.46898 * 111.00226 * 57.33147 * 17 16 15 20 20 H 1.08999 * 109.47117 * 299.99598 * 19 17 16 21 21 C 1.52998 * 109.47280 * 59.99773 * 19 17 16 22 22 C 1.50705 * 109.47153 * 179.97438 * 19 17 16 23 23 H 1.08002 * 119.99881 * 359.97438 * 22 19 17 24 24 C 1.37871 * 120.00096 * 179.97438 * 22 19 17 25 25 N 1.31522 * 119.99686 * 0.02562 * 24 22 19 26 26 Si 1.86800 * 120.00422 * 180.02562 * 24 22 19 27 27 H 1.48506 * 109.46656 * 59.99835 * 26 24 22 28 28 H 1.48501 * 109.47339 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46964 * 300.00373 * 26 24 22 30 30 H 1.08997 * 109.47003 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47090 * 60.00816 * 1 2 3 33 33 H 1.09005 * 109.46182 * 299.99420 * 3 2 1 34 34 H 1.08997 * 109.47516 * 59.99310 * 3 2 1 35 35 H 1.09008 * 109.46624 * 304.99826 * 7 4 3 36 36 H 1.09001 * 109.47369 * 64.99467 * 7 4 3 37 37 H 1.09001 * 112.84781 * 350.33605 * 10 9 8 38 38 H 1.09001 * 113.61216 * 334.55777 * 11 10 9 39 39 H 1.08996 * 113.61827 * 105.46846 * 11 10 9 40 40 H 1.09005 * 113.53496 * 270.80552 * 12 11 10 41 41 H 1.09004 * 113.74720 * 139.94557 * 12 11 10 42 42 H 1.09002 * 113.61348 * 254.52862 * 13 10 9 43 43 H 1.08996 * 113.61774 * 25.35285 * 13 10 9 44 44 H 1.09005 * 109.46952 * 65.20735 * 18 17 16 45 45 H 1.08996 * 109.47166 * 185.20414 * 18 17 16 46 46 H 1.08998 * 109.47136 * 305.20571 * 18 17 16 47 47 H 1.08996 * 109.47164 * 180.02562 * 21 19 17 48 48 H 1.09006 * 109.47143 * 300.00177 * 21 19 17 49 49 H 1.08999 * 109.47188 * 59.99868 * 21 19 17 50 50 H 0.97007 * 119.99901 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8629 0.7232 0.9323 6 9 4.1041 2.4576 -0.1144 7 6 3.9791 0.3193 -1.1806 8 7 5.4266 0.1046 -1.1123 9 6 6.4057 0.9116 -1.6220 10 6 6.1990 2.2039 -2.3694 11 6 7.1665 2.3947 -3.5493 12 6 7.2601 3.8729 -3.1291 13 6 6.8842 3.4128 -1.7107 14 7 7.5508 0.3577 -1.3394 15 7 7.3628 -0.7406 -0.6990 16 6 6.0774 -0.9449 -0.5319 17 7 5.4915 -2.0233 0.1117 18 6 5.7197 -3.2685 -0.6333 19 6 5.9777 -2.1396 1.4930 20 1 7.0584 -2.2813 1.4871 21 6 5.6349 -0.8630 2.2636 22 6 5.3195 -3.3201 2.1596 23 1 4.6106 -3.9234 1.6119 24 6 5.6223 -3.6300 3.4684 25 7 6.4853 -2.8950 4.1354 26 14 4.8071 -5.0937 4.2945 27 1 5.1394 -6.3327 3.5462 28 1 5.2995 -5.2119 5.6905 29 1 3.3347 -4.9006 4.3029 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 1.6886 1.8462 -0.8901 34 1 1.6886 1.8464 0.8899 35 1 3.4669 -0.6421 -1.1392 36 1 3.7302 0.8237 -2.1142 37 1 5.1549 2.3810 -2.6277 38 1 8.1036 1.8492 -3.4381 39 1 6.7016 2.2454 -4.5238 40 1 6.5066 4.5068 -3.5966 41 1 8.2657 4.2871 -3.2017 42 1 6.1916 4.0842 -1.2031 43 1 7.7430 3.1460 -1.0949 44 1 6.7850 -3.4997 -0.6369 45 1 5.1730 -4.0823 -0.1571 46 1 5.3707 -3.1476 -1.6588 47 1 5.9961 -0.9491 3.2883 48 1 6.1106 -0.0089 1.7816 49 1 4.5542 -0.7213 2.2695 50 1 6.6987 -3.1133 5.0562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518762161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = 18.157400 kcal Electronic energy + Delta-G solvation = -32200.880664 eV Core-core repulsion = 27987.538215 eV Total energy + Delta-G solvation = -4213.342449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.83346 -42.46256 -38.55665 -38.19876 -36.87099 -35.03925 -32.87702 -31.31841 -29.80806 -29.15453 -27.26333 -26.17444 -25.67512 -25.59375 -25.17332 -24.27583 -22.23850 -21.76178 -20.73968 -19.73361 -18.76171 -17.40838 -17.17514 -16.59436 -16.27967 -15.97799 -15.83395 -15.39057 -15.33339 -15.11233 -14.91500 -14.53096 -14.35799 -13.84049 -13.63473 -13.27725 -12.95504 -12.75978 -12.41794 -12.35322 -12.32616 -12.21903 -11.85220 -11.74141 -11.55790 -11.25346 -11.11265 -10.99552 -10.88200 -10.83596 -10.76000 -10.49974 -10.46254 -10.28169 -10.23897 -10.06839 -9.99386 -9.94285 -9.59488 -9.07167 -8.49571 -8.30323 -7.67295 -6.05077 -4.11535 2.19326 2.67072 3.30306 3.31081 3.35154 3.36389 3.39153 4.24224 4.34463 4.42810 4.51186 4.55477 4.67469 4.68432 4.72189 4.82274 4.92466 4.96651 5.01971 5.12536 5.14142 5.26698 5.27260 5.42505 5.50705 5.60265 5.63967 5.68029 5.81865 5.84121 5.88786 5.94640 6.00964 6.10682 6.27592 6.37420 6.50546 6.53774 6.64288 6.76271 6.84257 6.91832 6.96948 7.17447 7.41782 7.67868 7.76969 7.94193 8.20364 8.48871 8.91757 9.32701 9.53063 11.01793 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.004347 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.655311 B = 6439.753935 C = 8046.205540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.044 3.956 4 C 0.076 3.924 5 H 0.111 0.889 6 F -0.199 7.199 7 C 0.099 3.901 8 N -0.473 5.473 9 C 0.177 3.823 10 C -0.021 4.021 11 C -0.123 4.123 12 C -0.141 4.141 13 C -0.120 4.120 14 N -0.289 5.289 15 N -0.318 5.318 16 C 0.381 3.619 17 N -0.472 5.472 18 C 0.051 3.949 19 C 0.227 3.773 20 H 0.021 0.979 21 C -0.130 4.130 22 C -0.510 4.510 23 H 0.066 0.934 24 C 0.063 3.937 25 N -0.888 5.888 26 Si 0.900 3.100 27 H -0.276 1.276 28 H -0.288 1.288 29 H -0.277 1.277 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.034 0.966 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.092 0.908 48 H 0.001 0.999 49 H 0.031 0.969 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.152 11.843 -13.035 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.294 6.294 3 C -0.034 4.034 4 C 0.039 3.961 5 H 0.129 0.871 6 F -0.180 7.180 7 C -0.025 4.025 8 N -0.166 5.166 9 C -0.090 4.090 10 C -0.042 4.042 11 C -0.161 4.161 12 C -0.178 4.178 13 C -0.158 4.158 14 N -0.129 5.129 15 N -0.160 5.160 16 C 0.025 3.975 17 N -0.199 5.199 18 C -0.097 4.097 19 C 0.123 3.877 20 H 0.039 0.961 21 C -0.188 4.188 22 C -0.549 4.549 23 H 0.084 0.916 24 C -0.139 4.139 25 N -0.527 5.527 26 Si 0.728 3.272 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.108 0.892 46 H 0.061 0.939 47 H 0.110 0.890 48 H 0.020 0.980 49 H 0.051 0.949 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.939 11.535 -12.731 19.366 hybrid contribution -1.423 -0.397 0.614 1.599 sum -10.362 11.139 -12.117 19.449 Atomic orbital electron populations 1.22788 0.80241 1.03353 0.99926 1.87944 1.20233 1.25778 1.95429 1.22880 0.92153 0.86372 1.02008 1.21868 0.92105 0.79915 1.02242 0.87139 1.92842 1.85821 1.41757 1.97533 1.22256 0.78235 1.03735 0.98323 1.46321 1.07575 1.19008 1.43724 1.24450 0.84843 0.96748 1.02948 1.20890 1.00086 0.87493 0.95768 1.22986 1.00099 0.96590 0.96428 1.22832 1.01937 0.96299 0.96770 1.22903 1.00775 0.95483 0.96651 1.73866 1.21181 1.04023 1.13805 1.74709 1.13140 1.11169 1.16989 1.22850 0.86734 0.91048 0.96840 1.59251 1.56240 0.99629 1.04802 1.22194 1.00598 0.91198 0.95660 1.19387 0.94949 0.95055 0.78310 0.96094 1.21835 0.98472 0.95047 1.03444 1.21013 1.25418 1.11315 0.97114 0.91588 1.24905 0.95087 0.96831 0.97101 1.69898 1.33291 1.38665 1.10807 0.86527 0.79616 0.82681 0.78373 1.20190 1.21325 1.20211 0.93827 0.89004 0.94059 0.92064 0.91480 0.85309 0.88907 0.88319 0.88601 0.91464 0.90294 0.91004 0.91105 0.89155 0.94727 0.89184 0.93909 0.88979 0.97980 0.94947 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.56 9.73 -35.23 -0.34 -4.90 16 3 C 0.04 0.47 5.89 37.16 0.22 0.69 16 4 C 0.08 1.04 3.99 -26.73 -0.11 0.93 16 5 H 0.11 1.87 6.67 -51.93 -0.35 1.53 16 6 F -0.20 -2.78 16.59 2.25 0.04 -2.74 16 7 C 0.10 1.37 5.56 -4.05 -0.02 1.35 16 8 N -0.47 -8.37 2.79 -114.08 -0.32 -8.69 16 9 C 0.18 3.08 7.04 -154.01 -1.08 1.99 16 10 C -0.02 -0.27 3.67 -90.96 -0.33 -0.61 16 11 C -0.12 -1.37 7.64 -25.83 -0.20 -1.56 16 12 C -0.14 -1.34 8.09 -25.83 -0.21 -1.55 16 13 C -0.12 -1.44 7.63 -25.92 -0.20 -1.64 16 14 N -0.29 -6.03 11.83 32.99 0.39 -5.64 16 15 N -0.32 -7.40 12.08 30.31 0.37 -7.04 16 16 C 0.38 8.14 5.05 -318.87 -1.61 6.52 16 17 N -0.47 -10.42 4.66 -176.08 -0.82 -11.24 16 18 C 0.05 1.03 9.15 60.06 0.55 1.58 16 19 C 0.23 5.84 1.98 -68.86 -0.14 5.71 16 20 H 0.02 0.63 8.06 -51.93 -0.42 0.21 16 21 C -0.13 -3.27 8.45 37.16 0.31 -2.96 16 22 C -0.51 -13.59 7.94 -34.44 -0.27 -13.87 16 23 H 0.07 1.71 6.40 -52.49 -0.34 1.37 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 25 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 26 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.13 1.88 7.39 -51.92 -0.38 1.49 16 36 H 0.09 1.01 7.37 -51.93 -0.38 0.62 16 37 H 0.10 1.09 7.25 -51.93 -0.38 0.71 16 38 H 0.10 1.24 7.82 -51.93 -0.41 0.84 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.79 6.28 -51.93 -0.33 1.46 16 46 H 0.04 0.75 8.11 -51.93 -0.42 0.33 16 47 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 48 H 0.00 0.03 7.22 -51.93 -0.38 -0.34 16 49 H 0.03 0.77 7.12 -51.93 -0.37 0.40 16 50 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -31.95 401.85 -9.34 -41.29 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.24 Total: 2.09 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.07 Total: -0.40 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.25 Total: -57.24 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.34 Total: -4.90 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.95 -9.34 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518762161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.444 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds