Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00111 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46701 * 294.99104 * 4 3 2 6 6 F 1.39901 * 109.46673 * 174.99623 * 4 3 2 7 7 C 1.52998 * 109.47581 * 54.99797 * 4 3 2 8 8 N 1.46494 * 109.47552 * 185.00096 * 7 4 3 9 9 C 1.36738 * 127.13591 * 273.02146 * 8 7 4 10 10 C 1.50707 * 126.34737 * 359.96142 * 9 8 7 11 11 C 1.53778 * 113.61403 * 219.14081 * 10 9 8 12 12 C 1.53956 * 87.01611 * 220.04856 * 11 10 9 13 13 C 1.53777 * 113.61415 * 121.52836 * 10 9 8 14 14 N 1.30300 * 107.30762 * 179.82846 * 9 8 7 15 15 N 1.28526 * 110.05034 * 0.44673 * 14 9 8 16 16 C 1.31222 * 109.86126 * 359.71217 * 15 14 9 17 17 N 1.38578 * 126.47056 * 179.97438 * 16 15 14 18 18 C 1.46897 * 111.00170 * 293.37221 * 17 16 15 19 19 C 1.46898 * 111.00226 * 57.33147 * 17 16 15 20 20 H 1.08999 * 109.47117 * 299.99598 * 19 17 16 21 21 C 1.52998 * 109.47280 * 59.99773 * 19 17 16 22 22 C 1.50705 * 109.47153 * 179.97438 * 19 17 16 23 23 H 1.08002 * 119.99881 * 359.97438 * 22 19 17 24 24 C 1.37871 * 120.00096 * 179.97438 * 22 19 17 25 25 N 1.31522 * 119.99686 * 0.02562 * 24 22 19 26 26 Si 1.86800 * 120.00422 * 180.02562 * 24 22 19 27 27 H 1.48506 * 109.46656 * 59.99835 * 26 24 22 28 28 H 1.48501 * 109.47339 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46964 * 300.00373 * 26 24 22 30 30 H 1.08997 * 109.47003 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47090 * 60.00816 * 1 2 3 33 33 H 1.09005 * 109.46182 * 299.99420 * 3 2 1 34 34 H 1.08997 * 109.47516 * 59.99310 * 3 2 1 35 35 H 1.09008 * 109.46624 * 304.99826 * 7 4 3 36 36 H 1.09001 * 109.47369 * 64.99467 * 7 4 3 37 37 H 1.09001 * 112.84781 * 350.33605 * 10 9 8 38 38 H 1.09001 * 113.61216 * 334.55777 * 11 10 9 39 39 H 1.08996 * 113.61827 * 105.46846 * 11 10 9 40 40 H 1.09005 * 113.53496 * 270.80552 * 12 11 10 41 41 H 1.09004 * 113.74720 * 139.94557 * 12 11 10 42 42 H 1.09002 * 113.61348 * 254.52862 * 13 10 9 43 43 H 1.08996 * 113.61774 * 25.35285 * 13 10 9 44 44 H 1.09005 * 109.46952 * 65.20735 * 18 17 16 45 45 H 1.08996 * 109.47166 * 185.20414 * 18 17 16 46 46 H 1.08998 * 109.47136 * 305.20571 * 18 17 16 47 47 H 1.08996 * 109.47164 * 180.02562 * 21 19 17 48 48 H 1.09006 * 109.47143 * 300.00177 * 21 19 17 49 49 H 1.08999 * 109.47188 * 59.99868 * 21 19 17 50 50 H 0.97007 * 119.99901 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8629 0.7232 0.9323 6 9 4.1041 2.4576 -0.1144 7 6 3.9791 0.3193 -1.1806 8 7 5.4266 0.1046 -1.1123 9 6 6.4057 0.9116 -1.6220 10 6 6.1990 2.2039 -2.3694 11 6 7.1665 2.3947 -3.5493 12 6 7.2601 3.8729 -3.1291 13 6 6.8842 3.4128 -1.7107 14 7 7.5508 0.3577 -1.3394 15 7 7.3628 -0.7406 -0.6990 16 6 6.0774 -0.9449 -0.5319 17 7 5.4915 -2.0233 0.1117 18 6 5.7197 -3.2685 -0.6333 19 6 5.9777 -2.1396 1.4930 20 1 7.0584 -2.2813 1.4871 21 6 5.6349 -0.8630 2.2636 22 6 5.3195 -3.3201 2.1596 23 1 4.6106 -3.9234 1.6119 24 6 5.6223 -3.6300 3.4684 25 7 6.4853 -2.8950 4.1354 26 14 4.8071 -5.0937 4.2945 27 1 5.1394 -6.3327 3.5462 28 1 5.2995 -5.2119 5.6905 29 1 3.3347 -4.9006 4.3029 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 1.6886 1.8462 -0.8901 34 1 1.6886 1.8464 0.8899 35 1 3.4669 -0.6421 -1.1392 36 1 3.7302 0.8237 -2.1142 37 1 5.1549 2.3810 -2.6277 38 1 8.1036 1.8492 -3.4381 39 1 6.7016 2.2454 -4.5238 40 1 6.5066 4.5068 -3.5966 41 1 8.2657 4.2871 -3.2017 42 1 6.1916 4.0842 -1.2031 43 1 7.7430 3.1460 -1.0949 44 1 6.7850 -3.4997 -0.6369 45 1 5.1730 -4.0823 -0.1571 46 1 5.3707 -3.1476 -1.6588 47 1 5.9961 -0.9491 3.2883 48 1 6.1106 -0.0089 1.7816 49 1 4.5542 -0.7213 2.2695 50 1 6.6987 -3.1133 5.0562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518762161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -0.341190 kcal Electronic energy + Delta-G solvation = -32201.682823 eV Core-core repulsion = 27987.538215 eV Total energy + Delta-G solvation = -4214.144608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.92892 -43.98078 -39.59478 -39.02354 -38.62129 -36.35939 -34.89625 -32.43004 -31.58726 -30.87259 -28.29424 -27.63396 -26.78123 -26.57598 -26.50848 -26.03901 -23.71561 -23.10144 -22.04660 -21.29443 -19.92939 -18.70221 -18.37261 -18.16836 -17.68923 -17.26542 -16.98059 -16.67580 -16.52814 -16.22311 -16.19118 -15.85815 -15.79269 -15.34249 -15.03409 -14.71400 -14.26393 -13.95238 -13.78154 -13.57133 -13.41538 -13.31820 -13.19246 -13.07999 -12.91985 -12.82526 -12.69197 -12.49884 -12.41415 -12.28361 -12.21513 -12.07370 -11.87632 -11.82636 -11.60262 -11.37147 -11.31187 -11.09485 -11.01548 -10.66182 -10.57190 -9.88122 -9.54324 -8.14222 -6.28753 0.71949 1.28337 1.45661 1.47871 1.55497 1.81496 2.41691 2.49787 2.95542 3.16649 3.20857 3.29673 3.49028 3.63964 3.72903 3.75637 3.78769 3.96326 4.00684 4.14287 4.18906 4.34801 4.39889 4.44968 4.48290 4.58277 4.60312 4.62673 4.65498 4.74621 4.76435 4.80266 4.86719 4.91858 4.92996 4.97949 5.01827 5.08042 5.11778 5.15392 5.26016 5.35083 5.53865 5.61994 5.63418 5.86189 5.96113 6.12151 6.13052 6.61018 6.81378 7.40378 7.76969 8.92887 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.004347 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.655311 B = 6439.753935 C = 8046.205540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.052 3.948 4 C 0.079 3.921 5 H 0.069 0.931 6 F -0.200 7.200 7 C 0.094 3.906 8 N -0.468 5.468 9 C 0.198 3.802 10 C -0.028 4.028 11 C -0.121 4.121 12 C -0.121 4.121 13 C -0.125 4.125 14 N -0.327 5.327 15 N -0.362 5.362 16 C 0.363 3.637 17 N -0.463 5.463 18 C 0.054 3.946 19 C 0.239 3.761 20 H -0.031 1.031 21 C -0.106 4.106 22 C -0.521 4.521 23 H 0.075 0.925 24 C 0.013 3.987 25 N -0.923 5.923 26 Si 0.970 3.030 27 H -0.268 1.268 28 H -0.288 1.288 29 H -0.265 1.265 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.013 0.987 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.066 0.934 48 H -0.007 1.007 49 H 0.040 0.960 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 13.102 -15.139 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C -0.026 4.026 4 C 0.042 3.958 5 H 0.087 0.913 6 F -0.181 7.181 7 C -0.028 4.028 8 N -0.161 5.161 9 C -0.070 4.070 10 C -0.049 4.049 11 C -0.159 4.159 12 C -0.158 4.158 13 C -0.164 4.164 14 N -0.166 5.166 15 N -0.205 5.205 16 C 0.005 3.995 17 N -0.190 5.190 18 C -0.093 4.093 19 C 0.133 3.867 20 H -0.013 1.013 21 C -0.164 4.164 22 C -0.559 4.559 23 H 0.093 0.907 24 C -0.186 4.186 25 N -0.562 5.562 26 Si 0.794 3.206 27 H -0.193 1.193 28 H -0.214 1.214 29 H -0.190 1.190 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.012 0.988 49 H 0.059 0.941 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.047 12.806 -14.862 23.022 hybrid contribution -0.439 -0.695 1.217 1.469 sum -12.486 12.111 -13.646 22.108 Atomic orbital electron populations 1.22969 0.78429 1.04018 1.01385 1.87899 1.22261 1.26670 1.95723 1.22844 0.89422 0.86311 1.04006 1.21741 0.94473 0.79478 1.00136 0.91285 1.92836 1.86185 1.41653 1.97414 1.22599 0.75650 1.04169 1.00403 1.46500 1.09208 1.17685 1.42693 1.25422 0.83776 0.97052 1.00716 1.21392 1.02334 0.85005 0.96141 1.22954 0.98583 0.97560 0.96845 1.22805 1.03266 0.95508 0.94192 1.22886 0.99902 0.95481 0.98112 1.73784 1.23235 1.04139 1.15410 1.74585 1.14806 1.12786 1.18277 1.22733 0.86839 0.91868 0.98035 1.59184 1.55571 1.00714 1.03501 1.22215 0.99417 0.90589 0.97080 1.19037 0.91867 0.95085 0.80723 1.01327 1.21544 0.98537 0.94685 1.01645 1.21288 1.25468 1.11657 0.97504 0.90713 1.25791 0.95495 0.99581 0.97735 1.70061 1.34662 1.40412 1.11034 0.85433 0.78952 0.79172 0.77020 1.19311 1.21371 1.18998 0.93223 0.88861 0.91703 0.88632 0.90823 0.85816 0.84726 0.85240 0.91184 0.88965 0.87240 0.90450 0.90087 0.92213 0.96780 0.88956 0.90996 0.91560 0.98794 0.94105 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.41 -8.99 9.73 -148.98 -1.45 -10.44 16 3 C 0.05 0.96 5.89 71.98 0.42 1.39 16 4 C 0.08 2.06 3.99 30.59 0.12 2.18 16 5 H 0.07 2.38 6.67 -2.39 -0.02 2.37 16 6 F -0.20 -5.20 16.59 44.97 0.75 -4.46 16 7 C 0.09 2.43 5.56 86.38 0.48 2.91 16 8 N -0.47 -16.42 2.79 -514.85 -1.44 -17.86 16 9 C 0.20 6.83 7.04 137.64 0.97 7.80 16 10 C -0.03 -0.65 3.67 -11.01 -0.04 -0.69 16 11 C -0.12 -2.39 7.64 31.18 0.24 -2.16 16 12 C -0.12 -1.89 8.09 31.18 0.25 -1.64 16 13 C -0.13 -2.80 7.63 31.12 0.24 -2.56 16 14 N -0.33 -14.15 11.83 -49.53 -0.59 -14.74 16 15 N -0.36 -17.79 12.08 -58.00 -0.70 -18.49 16 16 C 0.36 15.98 5.05 260.11 1.31 17.30 16 17 N -0.46 -21.10 4.66 -711.01 -3.31 -24.41 16 18 C 0.05 2.23 9.15 127.69 1.17 3.40 16 19 C 0.24 12.88 1.98 44.17 0.09 12.97 16 20 H -0.03 -1.97 8.06 -2.39 -0.02 -1.99 16 21 C -0.11 -5.62 8.45 71.98 0.61 -5.01 16 22 C -0.52 -28.40 7.94 25.60 0.20 -28.20 16 23 H 0.07 3.87 6.40 -2.91 -0.02 3.85 16 24 C 0.01 0.72 5.30 84.65 0.45 1.17 16 25 N -0.92 -54.34 11.32 21.45 0.24 -54.09 16 26 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 3.40 7.39 -2.38 -0.02 3.39 16 36 H 0.13 2.34 7.37 -2.39 -0.02 2.32 16 37 H 0.13 2.24 7.25 -2.39 -0.02 2.22 16 38 H 0.07 1.78 7.82 -2.39 -0.02 1.76 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.71 8.09 -2.39 -0.02 1.69 16 44 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.09 3.69 6.28 -2.39 -0.02 3.68 16 46 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 47 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 48 H -0.01 -0.38 7.22 -2.38 -0.02 -0.39 16 49 H 0.04 2.03 7.12 -2.39 -0.02 2.02 16 50 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -74.58 401.85 4.22 -70.36 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.93 Total: 18.58 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 7.76 Total: 10.50 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -5.79 Total: -129.59 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.45 Total: -10.44 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.75 Total: -4.46 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.58 4.22 -70.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518762161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.018 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds