Wall clock time and date at job start Sat Apr 11 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00103 * 2 1 4 4 C 1.52996 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47205 * 175.00411 * 4 3 2 6 6 F 1.39902 * 109.47028 * 294.99949 * 4 3 2 7 7 C 1.53003 * 109.47258 * 54.99767 * 4 3 2 8 8 N 1.46503 * 109.46886 * 174.99675 * 7 4 3 9 9 C 1.36739 * 127.13209 * 91.27594 * 8 7 4 10 10 C 1.50696 * 126.35086 * 359.93563 * 9 8 7 11 11 C 1.53778 * 113.61575 * 219.14145 * 10 9 8 12 12 C 1.53964 * 87.02053 * 220.04411 * 11 10 9 13 13 C 1.53781 * 113.61821 * 121.53077 * 10 9 8 14 14 N 1.30292 * 107.30349 * 179.97438 * 9 8 7 15 15 N 1.28525 * 110.05643 * 359.97438 * 14 9 8 16 16 C 1.31222 * 109.85693 * 359.74232 * 15 14 9 17 17 N 1.38581 * 126.47371 * 180.25780 * 16 15 14 18 18 C 1.46900 * 110.99811 * 70.25742 * 17 16 15 19 19 C 1.46904 * 111.00285 * 306.30530 * 17 16 15 20 20 H 1.08999 * 109.46748 * 59.99451 * 19 17 16 21 21 C 1.53003 * 109.46643 * 300.00119 * 19 17 16 22 22 C 1.50692 * 109.47383 * 179.97438 * 19 17 16 23 23 H 1.08000 * 119.99842 * 359.97438 * 22 19 17 24 24 C 1.37876 * 120.00209 * 179.97438 * 22 19 17 25 25 N 1.31514 * 119.99580 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 120.00204 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.46695 * 89.99970 * 26 24 22 28 28 H 1.48496 * 109.46993 * 209.99660 * 26 24 22 29 29 H 1.48498 * 109.47246 * 330.00082 * 26 24 22 30 30 H 1.09001 * 109.47349 * 59.99841 * 1 2 3 31 31 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46774 * 300.00141 * 1 2 3 33 33 H 1.08999 * 109.47149 * 300.00049 * 3 2 1 34 34 H 1.09001 * 109.46973 * 60.00236 * 3 2 1 35 35 H 1.08998 * 109.47300 * 295.00024 * 7 4 3 36 36 H 1.09002 * 109.46788 * 55.00473 * 7 4 3 37 37 H 1.09009 * 112.84959 * 350.33467 * 10 9 8 38 38 H 1.08996 * 113.61571 * 334.56621 * 11 10 9 39 39 H 1.09002 * 113.61807 * 105.47473 * 11 10 9 40 40 H 1.08999 * 113.53882 * 270.81429 * 12 11 10 41 41 H 1.08997 * 113.74055 * 139.94172 * 12 11 10 42 42 H 1.09000 * 113.61571 * 254.53564 * 13 10 9 43 43 H 1.09005 * 113.61308 * 25.35061 * 13 10 9 44 44 H 1.08997 * 109.47646 * 53.87433 * 18 17 16 45 45 H 1.08998 * 109.47354 * 173.87352 * 18 17 16 46 46 H 1.09001 * 109.47305 * 293.87249 * 18 17 16 47 47 H 1.09006 * 109.46910 * 299.99564 * 21 19 17 48 48 H 1.09000 * 109.47141 * 59.99879 * 21 19 17 49 49 H 1.09005 * 109.46860 * 179.97438 * 21 19 17 50 50 H 0.97003 * 119.99484 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1765 -0.0901 6 9 3.9567 0.5919 1.1945 7 6 3.9780 0.3197 -1.1826 8 7 5.4412 0.3018 -1.2536 9 6 6.2853 -0.5983 -0.6646 10 6 5.8835 -1.7720 0.1910 11 6 6.8135 -2.0047 1.3934 12 6 6.6760 -3.5110 1.1058 13 6 6.3715 -3.1256 -0.3515 14 7 7.5014 -0.2528 -0.9795 15 7 7.4833 0.7961 -1.7222 16 6 6.2441 1.1758 -1.9270 17 7 5.8292 2.2617 -2.6815 18 6 6.0566 2.0255 -4.1134 19 6 6.4940 3.4948 -2.2393 20 1 7.5729 3.3851 -2.3484 21 6 6.1541 3.7590 -0.7711 22 6 6.0194 4.6510 -3.0812 23 1 5.2966 4.4862 -3.8666 24 6 6.5079 5.9192 -2.8490 25 7 7.3878 6.1199 -1.8923 26 14 5.9202 7.3524 -3.8931 27 1 4.7243 7.9666 -3.2623 28 1 7.0008 8.3656 -3.9962 29 1 5.5681 6.8642 -5.2506 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.6083 -0.6967 -1.0476 36 1 3.5745 0.7335 -2.1068 37 1 4.8254 -1.7623 0.4529 38 1 7.8233 -1.6222 1.2449 39 1 6.3803 -1.7000 2.3461 40 1 5.8350 -3.9772 1.6190 41 1 7.6058 -4.0672 1.2252 42 1 5.5819 -3.7243 -0.8056 43 1 7.2594 -3.0500 -0.9792 44 1 5.5862 1.0868 -4.4061 45 1 5.6245 2.8435 -4.6898 46 1 7.1279 1.9708 -4.3071 47 1 5.0751 3.8687 -0.6620 48 1 6.4978 2.9226 -0.1624 49 1 6.6478 4.6737 -0.4428 50 1 7.7318 7.0121 -1.7291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518762163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:12 Heat of formation + Delta-G solvation = 15.915636 kcal Electronic energy + Delta-G solvation = -32052.054698 eV Core-core repulsion = 27838.615039 eV Total energy + Delta-G solvation = -4213.439659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.66584 -42.47475 -38.53841 -38.17764 -36.92043 -35.09298 -32.92521 -31.38703 -29.82041 -29.20389 -27.32434 -26.24904 -25.72392 -25.58626 -25.17658 -24.31608 -22.17902 -21.78600 -20.73222 -19.74252 -18.75655 -17.45654 -17.07384 -16.61916 -16.36764 -15.97014 -15.73358 -15.45340 -15.32870 -15.15257 -14.91305 -14.51558 -14.43345 -13.92363 -13.68138 -13.28326 -12.92728 -12.60876 -12.40155 -12.38465 -12.33615 -12.23319 -11.96424 -11.84020 -11.43443 -11.30211 -11.13757 -11.07699 -10.92349 -10.82148 -10.77682 -10.47011 -10.45715 -10.32896 -10.28697 -10.12193 -10.05349 -9.95140 -9.61757 -9.12058 -8.54777 -8.33049 -7.72806 -6.10189 -4.17375 2.18083 2.65785 3.24513 3.31870 3.33680 3.36730 3.38294 4.23197 4.33158 4.42210 4.47872 4.52504 4.63728 4.70675 4.72542 4.82691 4.91828 5.02327 5.04196 5.06940 5.16648 5.20971 5.22421 5.37583 5.48293 5.52899 5.64943 5.72009 5.77449 5.85482 5.87520 5.94069 6.01816 6.09439 6.27722 6.32040 6.48438 6.55105 6.59334 6.72840 6.74293 6.86598 6.92141 7.14862 7.37620 7.63167 7.71715 7.87912 8.15489 8.43130 8.86317 9.31993 9.47781 10.96584 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.004125 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.224825 B = 6786.531345 C = 8428.710751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.039 3.961 4 C 0.082 3.918 5 H 0.115 0.885 6 F -0.201 7.201 7 C 0.099 3.901 8 N -0.474 5.474 9 C 0.182 3.818 10 C -0.025 4.025 11 C -0.120 4.120 12 C -0.140 4.140 13 C -0.124 4.124 14 N -0.290 5.290 15 N -0.315 5.315 16 C 0.376 3.624 17 N -0.474 5.474 18 C 0.050 3.950 19 C 0.226 3.774 20 H 0.023 0.977 21 C -0.130 4.130 22 C -0.513 4.513 23 H 0.066 0.934 24 C 0.063 3.937 25 N -0.886 5.886 26 Si 0.900 3.100 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.028 0.972 48 H 0.004 0.996 49 H 0.092 0.908 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.591 -14.997 4.319 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.039 4.039 4 C 0.044 3.956 5 H 0.133 0.867 6 F -0.182 7.182 7 C -0.026 4.026 8 N -0.167 5.167 9 C -0.085 4.085 10 C -0.046 4.046 11 C -0.158 4.158 12 C -0.177 4.177 13 C -0.163 4.163 14 N -0.129 5.129 15 N -0.158 5.158 16 C 0.020 3.980 17 N -0.201 5.201 18 C -0.097 4.097 19 C 0.122 3.878 20 H 0.041 0.959 21 C -0.188 4.188 22 C -0.552 4.552 23 H 0.084 0.916 24 C -0.139 4.139 25 N -0.524 5.524 26 Si 0.728 3.272 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.108 0.892 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.023 0.977 49 H 0.111 0.889 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.332 -14.943 4.405 19.264 hybrid contribution -1.282 1.237 -0.470 1.842 sum -12.614 -13.706 3.935 19.038 Atomic orbital electron populations 1.22767 0.80557 1.02916 1.00243 1.87885 1.20143 1.27063 1.95532 1.23141 0.92086 0.85887 1.02788 1.22168 0.93269 0.98886 0.81232 0.86739 1.92846 1.91408 1.85982 1.47945 1.22216 0.77218 1.02907 1.00219 1.46334 1.07704 1.23503 1.39187 1.24462 0.87027 0.95653 1.01387 1.20957 1.00447 0.88519 0.94631 1.22938 1.00574 0.95629 0.96694 1.22821 1.01923 0.96592 0.96410 1.22964 1.01755 0.94484 0.97080 1.73875 1.17618 1.08785 1.12658 1.74704 1.16962 1.08230 1.15870 1.22849 0.85316 0.92784 0.97049 1.59279 1.58616 0.99532 1.02703 1.22202 1.00245 1.00663 0.86622 1.19402 0.93081 0.82331 0.93029 0.95891 1.21834 0.99056 1.01111 0.96811 1.21042 1.25541 0.91404 1.17164 0.91583 1.24913 0.94853 0.98762 0.95389 1.69903 1.29607 1.22272 1.30650 0.86467 0.78275 0.81914 0.80552 1.20690 1.21196 1.19821 0.93753 0.89465 0.93919 0.90551 0.91323 0.87647 0.86716 0.87736 0.88678 0.91191 0.90210 0.91022 0.91423 0.89169 0.93915 0.89209 0.94666 0.95264 0.97713 0.88903 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.07 9.92 -35.23 -0.35 -4.42 16 3 C 0.04 0.41 5.89 37.16 0.22 0.62 16 4 C 0.08 1.11 4.00 -26.73 -0.11 1.00 16 5 H 0.12 1.80 6.83 -51.93 -0.35 1.44 16 6 F -0.20 -3.09 16.84 2.25 0.04 -3.05 16 7 C 0.10 1.35 5.38 -4.04 -0.02 1.33 16 8 N -0.47 -8.30 2.79 -114.08 -0.32 -8.62 16 9 C 0.18 3.19 7.11 -154.02 -1.09 2.09 16 10 C -0.02 -0.33 4.01 -90.96 -0.36 -0.69 16 11 C -0.12 -1.49 7.63 -25.82 -0.20 -1.68 16 12 C -0.14 -1.37 8.09 -25.82 -0.21 -1.58 16 13 C -0.12 -1.40 7.63 -25.92 -0.20 -1.60 16 14 N -0.29 -6.05 11.83 32.99 0.39 -5.66 16 15 N -0.32 -7.30 11.99 30.31 0.36 -6.94 16 16 C 0.38 7.86 5.09 -318.88 -1.62 6.24 16 17 N -0.47 -10.10 4.66 -176.08 -0.82 -10.92 16 18 C 0.05 0.98 9.14 60.06 0.55 1.53 16 19 C 0.23 5.67 1.96 -68.86 -0.14 5.53 16 20 H 0.02 0.68 8.01 -51.93 -0.42 0.26 16 21 C -0.13 -3.20 8.62 37.16 0.32 -2.88 16 22 C -0.51 -13.31 7.95 -34.44 -0.27 -13.58 16 23 H 0.07 1.65 6.39 -52.49 -0.34 1.32 16 24 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 25 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 26 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.11 1.27 7.02 -51.93 -0.36 0.90 16 36 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.10 1.30 7.15 -51.92 -0.37 0.93 16 38 H 0.09 1.35 7.81 -51.93 -0.41 0.94 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 44 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.09 1.71 6.31 -51.93 -0.33 1.39 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.03 0.66 7.08 -51.93 -0.37 0.29 16 48 H 0.00 0.10 7.22 -51.93 -0.38 -0.28 16 49 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 50 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -31.51 402.97 -9.39 -40.90 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.26 Total: 2.15 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.12 Total: -0.75 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.24 Total: -56.32 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.35 Total: -4.42 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.51 -9.39 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518762163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.816 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds