Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00103 * 2 1 4 4 C 1.52996 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47205 * 175.00411 * 4 3 2 6 6 F 1.39902 * 109.47028 * 294.99949 * 4 3 2 7 7 C 1.53003 * 109.47258 * 54.99767 * 4 3 2 8 8 N 1.46503 * 109.46886 * 174.99675 * 7 4 3 9 9 C 1.36739 * 127.13209 * 91.27594 * 8 7 4 10 10 C 1.50696 * 126.35086 * 359.93563 * 9 8 7 11 11 C 1.53778 * 113.61575 * 219.14145 * 10 9 8 12 12 C 1.53964 * 87.02053 * 220.04411 * 11 10 9 13 13 C 1.53781 * 113.61821 * 121.53077 * 10 9 8 14 14 N 1.30292 * 107.30349 * 179.97438 * 9 8 7 15 15 N 1.28525 * 110.05643 * 359.97438 * 14 9 8 16 16 C 1.31222 * 109.85693 * 359.74232 * 15 14 9 17 17 N 1.38581 * 126.47371 * 180.25780 * 16 15 14 18 18 C 1.46900 * 110.99811 * 70.25742 * 17 16 15 19 19 C 1.46904 * 111.00285 * 306.30530 * 17 16 15 20 20 H 1.08999 * 109.46748 * 59.99451 * 19 17 16 21 21 C 1.53003 * 109.46643 * 300.00119 * 19 17 16 22 22 C 1.50692 * 109.47383 * 179.97438 * 19 17 16 23 23 H 1.08000 * 119.99842 * 359.97438 * 22 19 17 24 24 C 1.37876 * 120.00209 * 179.97438 * 22 19 17 25 25 N 1.31514 * 119.99580 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 120.00204 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.46695 * 89.99970 * 26 24 22 28 28 H 1.48496 * 109.46993 * 209.99660 * 26 24 22 29 29 H 1.48498 * 109.47246 * 330.00082 * 26 24 22 30 30 H 1.09001 * 109.47349 * 59.99841 * 1 2 3 31 31 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46774 * 300.00141 * 1 2 3 33 33 H 1.08999 * 109.47149 * 300.00049 * 3 2 1 34 34 H 1.09001 * 109.46973 * 60.00236 * 3 2 1 35 35 H 1.08998 * 109.47300 * 295.00024 * 7 4 3 36 36 H 1.09002 * 109.46788 * 55.00473 * 7 4 3 37 37 H 1.09009 * 112.84959 * 350.33467 * 10 9 8 38 38 H 1.08996 * 113.61571 * 334.56621 * 11 10 9 39 39 H 1.09002 * 113.61807 * 105.47473 * 11 10 9 40 40 H 1.08999 * 113.53882 * 270.81429 * 12 11 10 41 41 H 1.08997 * 113.74055 * 139.94172 * 12 11 10 42 42 H 1.09000 * 113.61571 * 254.53564 * 13 10 9 43 43 H 1.09005 * 113.61308 * 25.35061 * 13 10 9 44 44 H 1.08997 * 109.47646 * 53.87433 * 18 17 16 45 45 H 1.08998 * 109.47354 * 173.87352 * 18 17 16 46 46 H 1.09001 * 109.47305 * 293.87249 * 18 17 16 47 47 H 1.09006 * 109.46910 * 299.99564 * 21 19 17 48 48 H 1.09000 * 109.47141 * 59.99879 * 21 19 17 49 49 H 1.09005 * 109.46860 * 179.97438 * 21 19 17 50 50 H 0.97003 * 119.99484 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1765 -0.0901 6 9 3.9567 0.5919 1.1945 7 6 3.9780 0.3197 -1.1826 8 7 5.4412 0.3018 -1.2536 9 6 6.2853 -0.5983 -0.6646 10 6 5.8835 -1.7720 0.1910 11 6 6.8135 -2.0047 1.3934 12 6 6.6760 -3.5110 1.1058 13 6 6.3715 -3.1256 -0.3515 14 7 7.5014 -0.2528 -0.9795 15 7 7.4833 0.7961 -1.7222 16 6 6.2441 1.1758 -1.9270 17 7 5.8292 2.2617 -2.6815 18 6 6.0566 2.0255 -4.1134 19 6 6.4940 3.4948 -2.2393 20 1 7.5729 3.3851 -2.3484 21 6 6.1541 3.7590 -0.7711 22 6 6.0194 4.6510 -3.0812 23 1 5.2966 4.4862 -3.8666 24 6 6.5079 5.9192 -2.8490 25 7 7.3878 6.1199 -1.8923 26 14 5.9202 7.3524 -3.8931 27 1 4.7243 7.9666 -3.2623 28 1 7.0008 8.3656 -3.9962 29 1 5.5681 6.8642 -5.2506 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.6083 -0.6967 -1.0476 36 1 3.5745 0.7335 -2.1068 37 1 4.8254 -1.7623 0.4529 38 1 7.8233 -1.6222 1.2449 39 1 6.3803 -1.7000 2.3461 40 1 5.8350 -3.9772 1.6190 41 1 7.6058 -4.0672 1.2252 42 1 5.5819 -3.7243 -0.8056 43 1 7.2594 -3.0500 -0.9792 44 1 5.5862 1.0868 -4.4061 45 1 5.6245 2.8435 -4.6898 46 1 7.1279 1.9708 -4.3071 47 1 5.0751 3.8687 -0.6620 48 1 6.4978 2.9226 -0.1624 49 1 6.6478 4.6737 -0.4428 50 1 7.7318 7.0121 -1.7291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518762163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -1.788718 kcal Electronic energy + Delta-G solvation = -32052.822416 eV Core-core repulsion = 27838.615039 eV Total energy + Delta-G solvation = -4214.207377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.81538 -43.98681 -39.60551 -38.92860 -38.62704 -36.39984 -34.89094 -32.48959 -31.57369 -30.88270 -28.29729 -27.64608 -26.78249 -26.63059 -26.52345 -26.01757 -23.69179 -23.05446 -22.03835 -21.28289 -19.93945 -18.69277 -18.37574 -18.06322 -17.79110 -17.14130 -16.92338 -16.77298 -16.45131 -16.28261 -16.12480 -15.87002 -15.79683 -15.37135 -15.02061 -14.80536 -14.26758 -13.91911 -13.79440 -13.39754 -13.34786 -13.27206 -13.25048 -13.08051 -12.94261 -12.85789 -12.67427 -12.56499 -12.37939 -12.22673 -12.20761 -12.06900 -11.95807 -11.83352 -11.60541 -11.39969 -11.31277 -11.08471 -10.98385 -10.69064 -10.57489 -9.91215 -9.54206 -8.13981 -6.28834 0.71539 1.27398 1.46286 1.47515 1.57843 1.81498 2.41722 2.61792 2.94129 3.17096 3.23168 3.32726 3.42149 3.58397 3.73145 3.74495 3.76975 3.94132 4.01025 4.15515 4.17493 4.34688 4.40715 4.42806 4.53879 4.59177 4.60710 4.62658 4.68742 4.75425 4.76139 4.80560 4.87395 4.90052 4.91926 4.97042 5.02050 5.05522 5.12604 5.13770 5.25075 5.37119 5.53597 5.60480 5.63743 5.86225 5.94314 6.07327 6.13263 6.59391 6.82246 7.40815 7.77030 8.93236 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.004125 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.224825 B = 6786.531345 C = 8428.710751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.048 3.952 4 C 0.080 3.920 5 H 0.089 0.911 6 F -0.213 7.213 7 C 0.095 3.905 8 N -0.469 5.469 9 C 0.199 3.801 10 C -0.032 4.032 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.119 4.119 14 N -0.326 5.326 15 N -0.361 5.361 16 C 0.362 3.638 17 N -0.461 5.461 18 C 0.053 3.947 19 C 0.237 3.763 20 H -0.030 1.030 21 C -0.109 4.109 22 C -0.520 4.520 23 H 0.078 0.922 24 C 0.013 3.987 25 N -0.922 5.922 26 Si 0.969 3.031 27 H -0.272 1.272 28 H -0.291 1.291 29 H -0.261 1.261 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.012 0.988 47 H 0.044 0.956 48 H -0.007 1.007 49 H 0.066 0.934 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.946 -16.488 4.006 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.030 4.030 4 C 0.043 3.957 5 H 0.107 0.893 6 F -0.194 7.194 7 C -0.027 4.027 8 N -0.161 5.161 9 C -0.069 4.069 10 C -0.052 4.052 11 C -0.166 4.166 12 C -0.157 4.157 13 C -0.157 4.157 14 N -0.165 5.165 15 N -0.204 5.204 16 C 0.005 3.995 17 N -0.188 5.188 18 C -0.095 4.095 19 C 0.131 3.869 20 H -0.012 1.012 21 C -0.168 4.168 22 C -0.559 4.559 23 H 0.096 0.904 24 C -0.186 4.186 25 N -0.561 5.561 26 Si 0.794 3.206 27 H -0.197 1.197 28 H -0.217 1.217 29 H -0.185 1.185 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.031 0.969 47 H 0.063 0.937 48 H 0.012 0.988 49 H 0.084 0.916 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.720 -16.464 4.088 22.461 hybrid contribution -0.243 1.602 -0.307 1.649 sum -14.964 -14.863 3.781 21.427 Atomic orbital electron populations 1.22972 0.78768 1.04176 1.01108 1.87842 1.22007 1.26728 1.95715 1.23015 0.89526 0.86417 1.04007 1.22168 0.95578 0.97315 0.80608 0.89348 1.92820 1.91805 1.86036 1.48706 1.22556 0.74715 1.04517 1.00904 1.46502 1.09145 1.22421 1.38072 1.25344 0.86178 0.95664 0.99692 1.21370 1.01519 0.87738 0.94607 1.22943 0.98972 0.98109 0.96548 1.22790 1.03439 0.94539 0.94953 1.22924 1.01590 0.93201 0.98031 1.73793 1.19728 1.09019 1.13957 1.74586 1.18858 1.09582 1.17336 1.22753 0.85579 0.93310 0.97902 1.59233 1.57337 0.98621 1.03599 1.22242 0.99169 1.02396 0.85648 1.19059 0.90276 0.84244 0.93313 1.01231 1.21576 0.99488 0.99187 0.96510 1.21326 1.25518 0.91655 1.17362 0.90399 1.25792 0.94804 1.01568 0.96450 1.70068 1.30930 1.22779 1.32366 0.85379 0.77661 0.78214 0.79318 1.19742 1.21682 1.18494 0.92654 0.88085 0.93296 0.88887 0.90575 0.85274 0.85541 0.85998 0.91254 0.90527 0.87576 0.90100 0.88964 0.91190 0.90897 0.88705 0.96898 0.93704 0.98788 0.91568 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -7.24 9.92 -148.98 -1.48 -8.71 16 3 C 0.05 0.89 5.89 71.98 0.42 1.31 16 4 C 0.08 2.08 4.00 30.59 0.12 2.21 16 5 H 0.09 2.77 6.83 -2.39 -0.02 2.75 16 6 F -0.21 -6.30 16.84 44.97 0.76 -5.54 16 7 C 0.10 2.44 5.38 86.38 0.46 2.90 16 8 N -0.47 -16.28 2.79 -514.85 -1.44 -17.71 16 9 C 0.20 6.99 7.11 137.64 0.98 7.97 16 10 C -0.03 -0.79 4.01 -11.02 -0.04 -0.84 16 11 C -0.13 -3.03 7.63 31.18 0.24 -2.79 16 12 C -0.12 -2.01 8.09 31.18 0.25 -1.75 16 13 C -0.12 -2.42 7.63 31.12 0.24 -2.18 16 14 N -0.33 -14.16 11.83 -49.54 -0.59 -14.75 16 15 N -0.36 -17.56 11.99 -58.01 -0.70 -18.26 16 16 C 0.36 15.51 5.09 260.11 1.32 16.83 16 17 N -0.46 -19.97 4.66 -711.01 -3.31 -23.28 16 18 C 0.05 2.05 9.14 127.69 1.17 3.22 16 19 C 0.24 12.33 1.96 44.17 0.09 12.42 16 20 H -0.03 -1.86 8.01 -2.39 -0.02 -1.88 16 21 C -0.11 -5.61 8.62 71.98 0.62 -4.99 16 22 C -0.52 -27.25 7.95 25.60 0.20 -27.04 16 23 H 0.08 3.82 6.39 -2.91 -0.02 3.81 16 24 C 0.01 0.70 5.30 84.65 0.45 1.15 16 25 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 26 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.13 2.71 7.02 -2.39 -0.02 2.69 16 36 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.12 2.67 7.15 -2.38 -0.02 2.65 16 38 H 0.07 2.02 7.81 -2.39 -0.02 2.00 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.73 8.09 -2.38 -0.02 1.72 16 44 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 45 H 0.09 3.55 6.31 -2.39 -0.02 3.54 16 46 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.04 2.09 7.08 -2.38 -0.02 2.08 16 48 H -0.01 -0.37 7.22 -2.39 -0.02 -0.38 16 49 H 0.07 3.75 6.07 -2.38 -0.01 3.74 16 50 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -71.96 402.97 4.22 -67.74 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.93 Total: 19.77 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 7.77 Total: 9.96 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.79 Total: -127.00 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -1.48 Total: -8.71 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.76 Total: -5.54 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -71.96 4.22 -67.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518762163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.950 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds