Wall clock time and date at job start Sat Apr 11 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81399 * 103.00073 * 2 1 4 4 C 1.53003 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46852 * 304.99442 * 4 3 2 6 6 C 1.52993 * 109.47215 * 64.99864 * 4 3 2 7 7 C 1.50700 * 109.46885 * 185.00195 * 4 3 2 8 8 O 1.21276 * 119.99902 * 327.11416 * 7 4 3 9 9 N 1.34775 * 120.00158 * 147.12371 * 7 4 3 10 10 C 1.47187 * 125.65794 * 5.23884 * 9 7 4 11 11 C 1.53679 * 107.10703 * 181.46149 * 10 9 7 12 12 C 1.54536 * 103.64767 * 21.55375 * 11 10 9 13 13 C 1.47480 * 125.66472 * 185.18916 * 9 7 4 14 14 H 1.08997 * 110.35236 * 274.87030 * 13 9 7 15 15 C 1.52998 * 110.44267 * 37.11290 * 13 9 7 16 16 C 1.52273 * 110.67078 * 263.46607 * 11 10 9 17 17 C 1.53304 * 109.42220 * 176.87725 * 16 11 10 18 18 N 1.46931 * 108.71169 * 53.52319 * 17 16 11 19 19 C 1.36932 * 120.56810 * 125.76611 * 18 17 16 20 20 H 1.07995 * 120.00559 * 332.89908 * 19 18 17 21 21 C 1.38817 * 119.99517 * 152.89551 * 19 18 17 22 22 N 1.31615 * 120.00404 * 343.80402 * 21 19 18 23 23 Si 1.86797 * 119.99469 * 163.79842 * 21 19 18 24 24 H 1.48506 * 109.46954 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.47467 * 300.00108 * 23 21 19 26 26 H 1.48503 * 109.47360 * 60.00507 * 23 21 19 27 27 C 1.46934 * 118.85906 * 306.03701 * 18 17 16 28 28 C 1.52276 * 110.67547 * 139.63765 * 11 10 9 29 29 H 1.08998 * 109.47197 * 60.00016 * 1 2 3 30 30 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47060 * 300.00000 * 1 2 3 32 32 H 1.08996 * 109.47443 * 60.00105 * 3 2 1 33 33 H 1.09007 * 109.46842 * 299.99954 * 3 2 1 34 34 H 1.09002 * 109.46852 * 182.58187 * 6 4 3 35 35 H 1.09001 * 109.47087 * 302.57322 * 6 4 3 36 36 H 1.09000 * 109.47391 * 62.57797 * 6 4 3 37 37 H 1.08992 * 109.91007 * 62.09282 * 10 9 7 38 38 H 1.09002 * 109.90597 * 300.82392 * 10 9 7 39 39 H 1.08993 * 111.01898 * 83.22872 * 12 11 10 40 40 H 1.09004 * 111.01584 * 207.10501 * 12 11 10 41 41 H 1.09000 * 109.47310 * 175.52920 * 15 13 9 42 42 H 1.09001 * 109.47427 * 295.53447 * 15 13 9 43 43 H 1.09003 * 109.47284 * 55.53499 * 15 13 9 44 44 H 1.09002 * 109.47412 * 56.89145 * 16 11 10 45 45 H 1.08993 * 109.47892 * 296.86869 * 16 11 10 46 46 H 1.08999 * 109.59907 * 293.75268 * 17 16 11 47 47 H 1.09003 * 109.60008 * 173.29098 * 17 16 11 48 48 H 0.96998 * 120.00266 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.59147 * 173.72448 * 27 18 17 50 50 H 1.09001 * 109.60046 * 294.19120 * 27 18 17 51 51 H 1.08997 * 109.47887 * 303.10625 * 28 11 10 52 52 H 1.09010 * 109.47574 * 63.13589 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1701 1.3951 0.8410 6 6 4.3172 1.3918 -1.3082 7 6 4.0820 3.4029 0.1232 8 8 3.3535 4.2383 -0.3690 9 7 5.1953 3.7830 0.7809 10 6 6.2190 2.8785 1.3289 11 6 7.2749 3.7562 2.0192 12 6 6.5223 5.0753 2.3049 13 6 5.5906 5.1741 1.0699 14 1 6.1283 5.5993 0.2225 15 6 4.3601 6.0221 1.3980 16 6 8.4516 4.0143 1.0878 17 6 9.4490 4.9542 1.7749 18 7 9.8026 4.3902 3.0848 19 6 11.1131 4.1817 3.4224 20 1 11.8476 4.0029 2.6511 21 6 11.4976 4.2003 4.7561 22 7 10.7003 4.7225 5.6637 23 14 13.1468 3.4840 5.2626 24 1 13.3178 3.6252 6.7310 25 1 13.1958 2.0461 4.8951 26 1 14.2376 4.2108 4.5647 27 6 8.7254 4.0483 4.0238 28 6 7.7330 3.1198 3.3246 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8032 2.2371 0.8899 33 1 1.8031 2.2371 -0.8901 34 1 5.4041 1.4727 -1.2894 35 1 4.0328 0.3455 -1.4198 36 1 3.9245 1.9665 -2.1470 37 1 6.6801 2.3079 0.5228 38 1 5.7668 2.2022 2.0543 39 1 5.9441 5.0038 3.2261 40 1 7.2120 5.9186 2.3428 41 1 4.6761 7.0248 1.6859 42 1 3.7157 6.0820 0.5209 43 1 3.8119 5.5637 2.2211 44 1 8.0925 4.4751 0.1676 45 1 8.9437 3.0703 0.8537 46 1 8.9934 5.9351 1.9101 47 1 10.3459 5.0465 1.1624 48 1 10.9688 4.7352 6.5957 49 1 9.1455 3.5433 4.8937 50 1 8.2122 4.9571 4.3382 51 1 6.8707 2.9544 3.9705 52 1 8.2177 2.1665 3.1137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565922142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:20 Heat of formation + Delta-G solvation = -39.297666 kcal Electronic energy + Delta-G solvation = -29123.235744 eV Core-core repulsion = 25441.322281 eV Total energy + Delta-G solvation = -3681.913462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85114 -40.03651 -37.52658 -35.68070 -34.76826 -32.73336 -32.54197 -31.53865 -29.93105 -28.71377 -28.19288 -27.17467 -25.85891 -24.97354 -23.86525 -22.59109 -22.08508 -19.78180 -19.65570 -18.49672 -18.09737 -17.45406 -16.91747 -16.78227 -16.35513 -15.80726 -15.70465 -15.51033 -15.19538 -15.01258 -14.91568 -14.67156 -14.50682 -14.30664 -14.22408 -14.04230 -13.74609 -13.54599 -13.16559 -13.12950 -13.10933 -13.03341 -12.95483 -12.84479 -12.53582 -12.35579 -12.32354 -12.27520 -12.17844 -12.01288 -11.85146 -11.72528 -11.42165 -11.06910 -11.01282 -10.98981 -10.53758 -10.45368 -9.65128 -8.67162 -8.61398 -7.82769 -5.26909 0.61310 1.48979 1.50810 1.56302 1.57190 1.60735 1.98980 2.54274 3.29739 3.38208 3.52820 3.55889 3.73651 3.76200 3.84722 3.86982 4.11588 4.20396 4.28126 4.30092 4.32344 4.35965 4.46010 4.48522 4.51507 4.58904 4.64994 4.69872 4.72488 4.74836 4.83659 4.84473 4.88970 4.91100 4.92481 4.98479 5.09487 5.14023 5.21878 5.23632 5.27585 5.31911 5.35981 5.46261 5.49221 5.60319 5.70106 5.86890 6.44090 6.52584 7.10675 7.20567 7.93205 8.42719 9.22522 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.002571 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.460348 B =10888.473301 C =11547.142291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.279 6.279 3 C -0.059 4.059 4 C -0.086 4.086 5 H 0.107 0.893 6 C -0.137 4.137 7 C 0.538 3.462 8 O -0.571 6.571 9 N -0.608 5.608 10 C 0.113 3.887 11 C -0.052 4.052 12 C -0.112 4.112 13 C 0.137 3.863 14 H 0.074 0.926 15 C -0.153 4.153 16 C -0.106 4.106 17 C 0.142 3.858 18 N -0.608 5.608 19 C -0.258 4.258 20 H 0.064 0.936 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.296 1.296 25 H -0.279 1.279 26 H -0.278 1.278 27 C 0.179 3.821 28 C -0.112 4.112 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.018 0.982 47 H 0.049 0.951 48 H 0.248 0.752 49 H 0.053 0.947 50 H -0.001 1.001 51 H 0.068 0.932 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.338 -7.685 -11.973 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.054 6.054 3 C -0.208 4.208 4 C -0.108 4.108 5 H 0.125 0.875 6 C -0.194 4.194 7 C 0.326 3.674 8 O -0.451 6.451 9 N -0.341 5.341 10 C -0.009 4.009 11 C -0.053 4.053 12 C -0.150 4.150 13 C 0.034 3.966 14 H 0.092 0.908 15 C -0.211 4.211 16 C -0.145 4.145 17 C 0.016 3.984 18 N -0.332 5.332 19 C -0.388 4.388 20 H 0.082 0.918 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.791 3.209 24 H -0.223 1.223 25 H -0.205 1.205 26 H -0.204 1.204 27 C 0.053 3.947 28 C -0.152 4.152 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.036 0.964 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.017 0.983 51 H 0.087 0.913 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.090 -8.124 -12.115 23.239 hybrid contribution 0.288 1.095 0.829 1.403 sum -17.803 -7.030 -11.286 22.220 Atomic orbital electron populations 1.23475 0.91699 1.07603 1.05725 1.86836 1.10204 1.10252 1.98102 1.23115 0.97543 0.94580 1.05568 1.21009 0.95039 0.91918 1.02850 0.87514 1.21747 1.01331 1.02355 0.94002 1.20446 0.79144 0.91186 0.76653 1.90628 1.51097 1.54641 1.48751 1.48717 1.21880 1.08257 1.55241 1.22218 0.87966 0.92410 0.98337 1.20842 0.94018 0.94953 0.95472 1.22829 0.97195 0.98079 0.96848 1.21924 0.95462 0.82063 0.97146 0.90782 1.22010 0.97275 0.99731 1.02051 1.21760 0.95228 1.00312 0.97169 1.21083 0.96469 0.94179 0.86626 1.44277 1.02109 1.72476 1.14321 1.19464 0.86348 1.41324 0.91688 0.91793 1.25708 1.00915 1.00813 0.97180 1.70155 1.38987 1.47797 1.01121 0.85415 0.80389 0.78721 0.76359 1.22253 1.20465 1.20399 1.20509 0.87304 0.94536 0.92349 1.21819 0.98793 0.99025 0.95535 0.89681 0.86652 0.89895 0.90315 0.89546 0.91262 0.89581 0.92395 0.89753 0.89966 0.91011 0.90530 0.90891 0.91531 0.93240 0.90939 0.91994 0.96381 0.93268 0.94248 0.92844 0.98319 0.91333 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.76 113.37 1.22 -0.04 16 2 S -0.28 -4.62 21.15 -56.49 -1.19 -5.82 16 3 C -0.06 -1.08 4.93 71.98 0.35 -0.73 16 4 C -0.09 -1.62 2.32 -11.54 -0.03 -1.65 16 5 H 0.11 1.86 6.97 -2.38 -0.02 1.84 16 6 C -0.14 -2.28 9.04 71.98 0.65 -1.63 16 7 C 0.54 13.12 6.59 87.66 0.58 13.69 16 8 O -0.57 -17.22 14.22 -3.02 -0.04 -17.26 16 9 N -0.61 -14.47 3.25 -788.68 -2.56 -17.04 16 10 C 0.11 2.49 5.42 86.48 0.47 2.96 16 11 C -0.05 -1.45 0.55 -51.91 -0.03 -1.48 16 12 C -0.11 -3.08 4.35 31.81 0.14 -2.94 16 13 C 0.14 3.45 3.42 45.49 0.16 3.60 16 14 H 0.07 1.89 7.74 -2.39 -0.02 1.87 16 15 C -0.15 -3.81 8.67 71.98 0.62 -3.18 16 16 C -0.11 -3.14 4.74 30.46 0.14 -2.99 16 17 C 0.14 5.46 6.19 86.40 0.53 5.99 16 18 N -0.61 -28.96 2.99 -699.52 -2.09 -31.06 16 19 C -0.26 -13.77 9.59 84.04 0.81 -12.96 16 20 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 21 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 22 N -0.93 -54.11 11.07 21.65 0.24 -53.87 16 23 Si 0.96 44.16 29.58 68.60 2.03 46.19 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.18 8.07 5.01 86.24 0.43 8.50 16 28 C -0.11 -3.74 4.70 30.30 0.14 -3.60 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.68 8.02 -2.39 -0.02 1.66 16 34 H 0.07 1.08 8.02 -2.39 -0.02 1.06 16 35 H 0.09 1.33 7.05 -2.39 -0.02 1.31 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.65 7.71 -2.39 -0.02 1.64 16 38 H 0.08 1.65 7.26 -2.39 -0.02 1.63 16 39 H 0.07 2.02 7.92 -2.39 -0.02 2.00 16 40 H 0.08 2.37 6.08 -2.38 -0.01 2.36 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.85 6.13 -2.39 -0.01 1.83 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.87 7.47 -2.39 -0.02 1.85 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.02 0.71 6.47 -2.39 -0.02 0.70 16 47 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 48 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.05 2.81 5.93 -2.38 -0.01 2.80 16 50 H 0.00 -0.06 7.56 -2.39 -0.02 -0.08 16 51 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 52 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -63.41 400.63 3.86 -59.55 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.87 Total: 18.11 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 6.61 Total: 1.18 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -4.42 Total: -101.96 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.04 Total: -17.26 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -1.19 Total: -5.82 kcal Total: -63.41 3.86 -59.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565922142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.250 kcal (2) G-P(sol) polarization free energy of solvation -63.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds