Wall clock time and date at job start Sat Apr 11 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99893 * 2 1 4 4 C 1.52995 * 109.47009 * 124.99913 * 3 2 1 5 5 N 1.46899 * 109.46776 * 179.97438 * 4 3 2 6 6 C 1.46906 * 111.00134 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47165 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46919 * 175.73404 * 7 6 5 9 9 H 1.09000 * 109.58491 * 186.18856 * 8 7 6 10 10 C 1.53185 * 109.59004 * 306.47425 * 8 7 6 11 11 H 1.09007 * 109.49819 * 54.46817 * 10 8 7 12 12 C 1.52997 * 109.49961 * 294.40577 * 10 8 7 13 13 C 1.53042 * 109.31464 * 174.41918 * 10 8 7 14 14 C 1.53042 * 109.53917 * 298.63460 * 13 10 8 15 15 C 1.53196 * 109.30987 * 61.36755 * 14 13 10 16 16 N 1.46926 * 109.58400 * 65.90896 * 8 7 6 17 17 C 1.34779 * 120.63360 * 6.60523 * 16 8 7 18 18 O 1.21278 * 119.99531 * 6.40983 * 17 16 8 19 19 C 1.50697 * 120.00233 * 186.40943 * 17 16 8 20 20 S 1.81000 * 109.47027 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99884 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99920 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00120 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99969 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47204 * 60.00035 * 25 23 21 27 27 H 1.48502 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47420 * 300.00031 * 25 23 21 29 29 H 1.07998 * 120.00028 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.99774 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99912 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47092 * 4.99297 * 3 2 1 33 33 H 1.09006 * 109.46100 * 244.99495 * 3 2 1 34 34 H 1.08998 * 109.47696 * 59.99755 * 4 3 2 35 35 H 1.08998 * 109.46958 * 299.99568 * 4 3 2 36 36 H 1.00901 * 111.00104 * 56.04383 * 5 4 3 37 37 H 1.08999 * 109.47126 * 300.00425 * 6 5 4 38 38 H 1.09000 * 109.46626 * 60.00333 * 6 5 4 39 39 H 1.08997 * 109.47733 * 295.73767 * 7 6 5 40 40 H 1.09001 * 109.47230 * 55.74262 * 7 6 5 41 41 H 1.09004 * 109.47346 * 59.99646 * 12 10 8 42 42 H 1.08995 * 109.47451 * 179.97438 * 12 10 8 43 43 H 1.08998 * 109.47257 * 299.99831 * 12 10 8 44 44 H 1.09002 * 109.45803 * 58.66097 * 13 10 8 45 45 H 1.08998 * 109.45992 * 178.62477 * 13 10 8 46 46 H 1.08998 * 109.49303 * 181.31136 * 14 13 10 47 47 H 1.08995 * 109.49823 * 301.41316 * 14 13 10 48 48 H 1.09000 * 109.58837 * 65.14918 * 15 14 13 49 49 H 1.08998 * 109.58696 * 185.58031 * 15 14 13 50 50 H 1.09005 * 109.47152 * 299.99864 * 19 17 16 51 51 H 1.08997 * 109.47049 * 60.00022 * 19 17 16 52 52 H 0.97000 * 119.99849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7699 2.6051 1.1812 6 6 4.7140 2.6681 2.3050 7 6 5.4593 4.0038 2.2707 8 6 6.3644 4.1144 3.4994 9 1 6.8120 5.1076 3.5352 10 6 5.5394 3.8768 4.7681 11 1 5.0177 2.9229 4.6895 12 6 4.5189 5.0048 4.9323 13 6 6.4724 3.8505 5.9809 14 6 7.4722 2.7013 5.8327 15 6 8.3192 2.9256 4.5761 16 7 7.4238 3.0992 3.4236 17 6 7.5692 2.3393 2.3200 18 8 6.8998 2.5669 1.3347 19 6 8.5635 1.2070 2.3104 20 16 8.5246 0.3836 0.6990 21 6 9.7450 -0.8600 0.9613 22 1 10.2534 -0.9257 1.9119 23 6 10.0523 -1.7558 -0.0534 24 7 9.4323 -1.6760 -1.2118 25 14 11.3466 -3.0736 0.2244 26 1 10.9342 -3.9417 1.3565 27 1 11.4879 -3.8956 -1.0043 28 1 12.6473 -2.4311 0.5417 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8501 -0.9354 0.0004 32 1 1.3586 2.1317 0.0894 33 1 2.6214 1.4025 -0.9314 34 1 3.7400 0.5066 1.0922 35 1 2.4772 1.2357 2.1129 36 1 3.1353 3.3894 1.1981 37 1 4.1675 2.5804 3.2440 38 1 5.4304 1.8505 2.2238 39 1 6.0657 4.0585 1.3666 40 1 4.7391 4.8219 2.2753 41 1 3.8565 5.0245 4.0669 42 1 3.9319 4.8352 5.8349 43 1 5.0410 5.9584 5.0120 44 1 7.0119 4.7954 6.0446 45 1 5.8851 3.7059 6.8877 46 1 8.1212 2.6688 6.7078 47 1 6.9324 1.7586 5.7442 48 1 8.9282 3.8210 4.7009 49 1 8.9640 2.0625 4.4112 50 1 9.5636 1.6001 2.4930 51 1 8.3063 0.4910 3.0910 52 1 9.6473 -2.3019 -1.9211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565931818.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:30 Heat of formation + Delta-G solvation = -1.718304 kcal Electronic energy + Delta-G solvation = -28665.262395 eV Core-core repulsion = 24984.978496 eV Total energy + Delta-G solvation = -3680.283899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72633 -37.48648 -36.87089 -34.92334 -33.67043 -32.62772 -32.39693 -30.20619 -29.18078 -27.36756 -26.38300 -25.46484 -24.50020 -22.90707 -22.06489 -21.31193 -20.30403 -19.72107 -18.71086 -17.52395 -16.65868 -15.99165 -15.83023 -15.47326 -15.33421 -14.97595 -14.78421 -14.54501 -14.16034 -13.98959 -13.84765 -13.46629 -13.41306 -13.13925 -12.99983 -12.68890 -12.61626 -12.46841 -12.17098 -12.08413 -11.94469 -11.75246 -11.50567 -11.17960 -11.03538 -11.01156 -10.99388 -10.85919 -10.81344 -10.74865 -10.53659 -10.42876 -10.26092 -9.77541 -9.34243 -9.03471 -8.47305 -8.35245 -8.17509 -7.98782 -6.45409 -6.18949 -3.88683 2.25216 2.97632 3.10815 3.24334 3.27376 3.30244 3.64174 4.22904 4.30314 4.55326 4.62356 4.68719 4.87299 4.94261 5.01438 5.13564 5.15914 5.17307 5.24466 5.32910 5.34503 5.36419 5.40686 5.52680 5.53056 5.56583 5.59410 5.63219 5.71103 5.72159 5.79768 5.82030 5.85928 5.88425 5.91191 5.97381 6.00923 6.05355 6.14054 6.16183 6.22618 6.28638 6.54094 6.59429 6.61034 6.75405 6.97909 7.34833 7.61257 7.66696 7.69455 8.37178 8.69775 9.26254 10.88156 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007031 B = 0.004082 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3981.207946 B = 6857.975256 C =10090.281148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.093 4.093 4 C 0.067 3.933 5 N -0.677 5.677 6 C 0.068 3.932 7 C -0.129 4.129 8 C 0.159 3.841 9 H 0.067 0.933 10 C -0.111 4.111 11 H 0.079 0.921 12 C -0.143 4.143 13 C -0.113 4.113 14 C -0.136 4.136 15 C 0.108 3.892 16 N -0.617 5.617 17 C 0.525 3.475 18 O -0.484 6.484 19 C -0.154 4.154 20 S -0.054 6.054 21 C -0.537 4.537 22 H 0.070 0.930 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.916 3.084 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.020 0.980 36 H 0.327 0.673 37 H 0.009 0.991 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 11.574 13.730 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.161 4.161 3 C -0.130 4.130 4 C -0.063 4.063 5 N -0.306 5.306 6 C -0.061 4.061 7 C -0.166 4.166 8 C 0.055 3.945 9 H 0.085 0.915 10 C -0.130 4.130 11 H 0.097 0.903 12 C -0.201 4.201 13 C -0.151 4.151 14 C -0.174 4.174 15 C -0.015 4.015 16 N -0.353 5.353 17 C 0.314 3.686 18 O -0.359 6.359 19 C -0.304 4.304 20 S 0.173 5.827 21 C -0.685 4.685 22 H 0.088 0.912 23 C -0.134 4.134 24 N -0.502 5.502 25 Si 0.742 3.258 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.038 0.962 36 H 0.143 0.857 37 H 0.027 0.973 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.104 0.896 51 H 0.103 0.897 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.872 11.609 11.613 20.262 hybrid contribution 1.030 -1.086 2.327 2.767 sum -10.841 10.523 13.939 20.557 Atomic orbital electron populations 1.23781 0.95924 1.01485 1.03083 1.23028 0.95954 0.98942 0.98158 1.20743 0.97552 0.94644 1.00070 1.21847 0.95272 0.93529 0.95632 1.60315 1.20474 1.03273 1.46579 1.22365 0.94702 0.99819 0.89181 1.22271 0.98344 0.96069 0.99901 1.21184 0.87437 0.90797 0.95036 0.91488 1.21685 0.96292 1.00206 0.94801 0.90260 1.21786 0.98627 0.98019 1.01676 1.21573 0.97225 0.98625 0.97634 1.21927 0.98465 0.99329 0.97713 1.21702 0.92197 1.02370 0.85243 1.48088 1.33213 1.38010 1.16018 1.20254 0.83533 0.82423 0.82417 1.90720 1.43986 1.67977 1.33170 1.23625 1.00241 0.98776 1.07801 1.85396 1.53100 1.36030 1.08212 1.22835 1.25423 1.17771 1.02510 0.91167 1.24960 0.96647 0.97361 0.94460 1.70010 1.40333 1.36418 1.03447 0.86272 0.81079 0.80669 0.77766 1.19997 1.20821 1.19972 0.88725 0.88907 0.87109 0.92111 0.89675 0.90430 0.96218 0.85659 0.97288 0.89095 0.85775 0.93452 0.92297 0.92742 0.92642 0.91933 0.91971 0.90874 0.91413 0.91675 0.89308 0.89648 0.89732 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.09 14.32 29.01 0.42 -1.67 16 2 C -0.14 -1.65 9.52 -36.02 -0.34 -1.99 16 3 C -0.09 -1.13 5.92 -27.88 -0.16 -1.30 16 4 C 0.07 0.92 5.67 -3.83 -0.02 0.90 16 5 N -0.68 -9.86 6.50 -113.78 -0.74 -10.60 16 6 C 0.07 1.00 4.37 -3.82 -0.02 0.99 16 7 C -0.13 -1.76 4.34 -26.73 -0.12 -1.88 16 8 C 0.16 1.92 2.66 -67.60 -0.18 1.74 16 9 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 10 C -0.11 -1.09 1.99 -90.50 -0.18 -1.28 16 11 H 0.08 0.91 5.93 -51.92 -0.31 0.61 16 12 C -0.14 -1.19 8.97 37.16 0.33 -0.85 16 13 C -0.11 -0.96 5.17 -26.69 -0.14 -1.10 16 14 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 15 C 0.11 1.18 6.35 -3.69 -0.02 1.16 16 16 N -0.62 -8.48 2.95 -165.19 -0.49 -8.96 16 17 C 0.53 9.46 6.31 -10.99 -0.07 9.40 16 18 O -0.48 -9.98 9.73 5.56 0.05 -9.92 16 19 C -0.15 -3.08 4.52 36.00 0.16 -2.91 16 20 S -0.05 -1.44 20.57 -107.50 -2.21 -3.66 16 21 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 22 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 23 C 0.08 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 25 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.09 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16 31 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 32 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.33 4.06 8.73 -39.29 -0.34 3.71 16 37 H 0.01 0.13 5.97 -51.93 -0.31 -0.18 16 38 H 0.09 1.69 5.04 -51.93 -0.26 1.42 16 39 H 0.12 2.15 5.57 -53.76 -0.30 1.85 16 40 H 0.05 0.56 6.92 -51.93 -0.36 0.20 16 41 H 0.06 0.51 6.75 -51.93 -0.35 0.16 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 50 H 0.09 1.61 7.69 -51.91 -0.40 1.21 16 51 H 0.08 1.60 7.94 -51.92 -0.41 1.19 16 52 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -31.83 408.93 -11.03 -42.85 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -9.21 Total: 6.20 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.31 Total: -13.10 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.49 Total: -44.91 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.05 Total: -9.92 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.83 -11.03 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565931818.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.133 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds