Wall clock time and date at job start Sat Apr 11 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99893 * 2 1 4 4 C 1.52995 * 109.47009 * 124.99913 * 3 2 1 5 5 N 1.46899 * 109.46776 * 179.97438 * 4 3 2 6 6 C 1.46906 * 111.00134 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47165 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46919 * 175.73404 * 7 6 5 9 9 H 1.09000 * 109.58491 * 186.18856 * 8 7 6 10 10 C 1.53185 * 109.59004 * 306.47425 * 8 7 6 11 11 H 1.09007 * 109.49819 * 54.46817 * 10 8 7 12 12 C 1.52997 * 109.49961 * 294.40577 * 10 8 7 13 13 C 1.53042 * 109.31464 * 174.41918 * 10 8 7 14 14 C 1.53042 * 109.53917 * 298.63460 * 13 10 8 15 15 C 1.53196 * 109.30987 * 61.36755 * 14 13 10 16 16 N 1.46926 * 109.58400 * 65.90896 * 8 7 6 17 17 C 1.34779 * 120.63360 * 6.60523 * 16 8 7 18 18 O 1.21278 * 119.99531 * 6.40983 * 17 16 8 19 19 C 1.50697 * 120.00233 * 186.40943 * 17 16 8 20 20 S 1.81000 * 109.47027 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99884 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99920 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00120 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99969 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47204 * 60.00035 * 25 23 21 27 27 H 1.48502 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47420 * 300.00031 * 25 23 21 29 29 H 1.07998 * 120.00028 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.99774 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99912 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47092 * 4.99297 * 3 2 1 33 33 H 1.09006 * 109.46100 * 244.99495 * 3 2 1 34 34 H 1.08998 * 109.47696 * 59.99755 * 4 3 2 35 35 H 1.08998 * 109.46958 * 299.99568 * 4 3 2 36 36 H 1.00901 * 111.00104 * 56.04383 * 5 4 3 37 37 H 1.08999 * 109.47126 * 300.00425 * 6 5 4 38 38 H 1.09000 * 109.46626 * 60.00333 * 6 5 4 39 39 H 1.08997 * 109.47733 * 295.73767 * 7 6 5 40 40 H 1.09001 * 109.47230 * 55.74262 * 7 6 5 41 41 H 1.09004 * 109.47346 * 59.99646 * 12 10 8 42 42 H 1.08995 * 109.47451 * 179.97438 * 12 10 8 43 43 H 1.08998 * 109.47257 * 299.99831 * 12 10 8 44 44 H 1.09002 * 109.45803 * 58.66097 * 13 10 8 45 45 H 1.08998 * 109.45992 * 178.62477 * 13 10 8 46 46 H 1.08998 * 109.49303 * 181.31136 * 14 13 10 47 47 H 1.08995 * 109.49823 * 301.41316 * 14 13 10 48 48 H 1.09000 * 109.58837 * 65.14918 * 15 14 13 49 49 H 1.08998 * 109.58696 * 185.58031 * 15 14 13 50 50 H 1.09005 * 109.47152 * 299.99864 * 19 17 16 51 51 H 1.08997 * 109.47049 * 60.00022 * 19 17 16 52 52 H 0.97000 * 119.99849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7699 2.6051 1.1812 6 6 4.7140 2.6681 2.3050 7 6 5.4593 4.0038 2.2707 8 6 6.3644 4.1144 3.4994 9 1 6.8120 5.1076 3.5352 10 6 5.5394 3.8768 4.7681 11 1 5.0177 2.9229 4.6895 12 6 4.5189 5.0048 4.9323 13 6 6.4724 3.8505 5.9809 14 6 7.4722 2.7013 5.8327 15 6 8.3192 2.9256 4.5761 16 7 7.4238 3.0992 3.4236 17 6 7.5692 2.3393 2.3200 18 8 6.8998 2.5669 1.3347 19 6 8.5635 1.2070 2.3104 20 16 8.5246 0.3836 0.6990 21 6 9.7450 -0.8600 0.9613 22 1 10.2534 -0.9257 1.9119 23 6 10.0523 -1.7558 -0.0534 24 7 9.4323 -1.6760 -1.2118 25 14 11.3466 -3.0736 0.2244 26 1 10.9342 -3.9417 1.3565 27 1 11.4879 -3.8956 -1.0043 28 1 12.6473 -2.4311 0.5417 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8501 -0.9354 0.0004 32 1 1.3586 2.1317 0.0894 33 1 2.6214 1.4025 -0.9314 34 1 3.7400 0.5066 1.0922 35 1 2.4772 1.2357 2.1129 36 1 3.1353 3.3894 1.1981 37 1 4.1675 2.5804 3.2440 38 1 5.4304 1.8505 2.2238 39 1 6.0657 4.0585 1.3666 40 1 4.7391 4.8219 2.2753 41 1 3.8565 5.0245 4.0669 42 1 3.9319 4.8352 5.8349 43 1 5.0410 5.9584 5.0120 44 1 7.0119 4.7954 6.0446 45 1 5.8851 3.7059 6.8877 46 1 8.1212 2.6688 6.7078 47 1 6.9324 1.7586 5.7442 48 1 8.9282 3.8210 4.7009 49 1 8.9640 2.0625 4.4112 50 1 9.5636 1.6001 2.4930 51 1 8.3063 0.4910 3.0910 52 1 9.6473 -2.3019 -1.9211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565931818.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:30 Heat of formation + Delta-G solvation = -21.180548 kcal Electronic energy + Delta-G solvation = -28666.106342 eV Core-core repulsion = 24984.978496 eV Total energy + Delta-G solvation = -3681.127845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89287 -38.63325 -37.97466 -35.93031 -34.69954 -34.57465 -33.59323 -31.32915 -30.46033 -28.48839 -27.62489 -27.19618 -25.60523 -23.87598 -23.20336 -22.20185 -21.42960 -20.67693 -20.05738 -19.28755 -17.95338 -17.15714 -17.02620 -16.87500 -16.68902 -16.33907 -15.96258 -15.83741 -15.35174 -15.16648 -14.98465 -14.69057 -14.52761 -14.30984 -14.21374 -14.02507 -13.69077 -13.40195 -13.32170 -13.19951 -13.16028 -12.93767 -12.88107 -12.68069 -12.52281 -12.40158 -12.09159 -11.98255 -11.76632 -11.74239 -11.69720 -11.55074 -11.44855 -11.15303 -11.12257 -10.25082 -10.21851 -9.82022 -9.49298 -9.14504 -8.62784 -8.33655 -6.10467 1.27374 1.37066 1.42201 1.46105 1.55989 1.69832 2.17262 2.29201 2.99914 3.22038 3.30797 3.67874 3.78907 3.87417 3.95221 3.98872 4.07736 4.18813 4.19780 4.28402 4.28871 4.34785 4.41495 4.46518 4.48348 4.49946 4.58800 4.64361 4.66162 4.73109 4.83485 4.86024 4.91407 4.93746 4.99604 5.09818 5.13158 5.16586 5.23226 5.24119 5.30048 5.35479 5.41015 5.47233 5.57761 5.72635 5.82918 5.87258 6.19039 6.19483 6.44654 6.63292 7.07321 7.34569 8.74957 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007031 B = 0.004082 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3981.207946 B = 6857.975256 C =10090.281148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.170 4.170 3 C -0.083 4.083 4 C 0.073 3.927 5 N -0.693 5.693 6 C 0.079 3.921 7 C -0.120 4.120 8 C 0.157 3.843 9 H 0.084 0.916 10 C -0.104 4.104 11 H 0.060 0.940 12 C -0.139 4.139 13 C -0.109 4.109 14 C -0.131 4.131 15 C 0.099 3.901 16 N -0.606 5.606 17 C 0.523 3.477 18 O -0.517 6.517 19 C -0.127 4.127 20 S -0.138 6.138 21 C -0.550 4.550 22 H 0.078 0.922 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.994 3.006 26 H -0.263 1.263 27 H -0.278 1.278 28 H -0.262 1.262 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.031 0.969 36 H 0.342 0.658 37 H 0.023 0.977 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.051 0.949 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.684 12.751 16.745 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C -0.121 4.121 4 C -0.057 4.057 5 N -0.324 5.324 6 C -0.049 4.049 7 C -0.157 4.157 8 C 0.054 3.946 9 H 0.101 0.899 10 C -0.123 4.123 11 H 0.078 0.922 12 C -0.197 4.197 13 C -0.146 4.146 14 C -0.169 4.169 15 C -0.023 4.023 16 N -0.341 5.341 17 C 0.310 3.690 18 O -0.394 6.394 19 C -0.279 4.279 20 S 0.089 5.911 21 C -0.698 4.698 22 H 0.096 0.904 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.816 3.184 26 H -0.188 1.188 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.160 0.840 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.116 0.884 51 H 0.111 0.889 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.211 12.818 14.677 22.995 hybrid contribution 1.052 -1.365 1.454 2.255 sum -11.159 11.453 16.131 22.713 Atomic orbital electron populations 1.24008 0.95194 1.02868 0.99957 1.22962 0.96695 0.98183 1.01014 1.20634 0.97312 0.95934 0.98170 1.21743 0.94727 0.92152 0.97036 1.60246 1.21146 1.04058 1.46969 1.22142 0.94058 0.99016 0.89724 1.22067 0.98443 0.96055 0.99172 1.21380 0.86996 0.90749 0.95453 0.89864 1.21614 0.96537 1.00030 0.94150 0.92168 1.21761 0.98165 0.97717 1.02051 1.21576 0.96903 0.98902 0.97265 1.21908 0.98638 0.98976 0.97403 1.21998 0.92253 1.03180 0.84869 1.48075 1.33667 1.37021 1.15362 1.19934 0.83044 0.82580 0.83406 1.90754 1.45020 1.68828 1.34826 1.23440 1.01937 0.99306 1.03175 1.85535 1.53700 1.37503 1.14368 1.23179 1.25476 1.18096 1.03028 0.90367 1.26071 0.98995 0.99874 0.93926 1.70181 1.42226 1.37650 1.04585 0.85067 0.78012 0.77296 0.78024 1.18757 1.20304 1.18651 0.87340 0.87418 0.88184 0.90079 0.91758 0.94057 0.95064 0.84009 0.95948 0.93202 0.89555 0.91194 0.92842 0.91514 0.91386 0.90440 0.90443 0.88408 0.92966 0.89418 0.90078 0.88357 0.88851 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 14.32 67.78 0.97 -2.48 16 2 C -0.17 -4.00 9.52 25.64 0.24 -3.76 16 3 C -0.08 -2.10 5.92 29.85 0.18 -1.92 16 4 C 0.07 2.14 5.67 86.30 0.49 2.62 16 5 N -0.69 -21.05 6.50 -513.90 -3.34 -24.39 16 6 C 0.08 2.43 4.37 86.30 0.38 2.81 16 7 C -0.12 -3.30 4.34 30.59 0.13 -3.17 16 8 C 0.16 3.56 2.66 44.97 0.12 3.68 16 9 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 10 C -0.10 -1.81 1.99 -10.72 -0.02 -1.83 16 11 H 0.06 1.30 5.93 -2.38 -0.01 1.29 16 12 C -0.14 -1.85 8.97 71.98 0.65 -1.21 16 13 C -0.11 -1.47 5.17 30.62 0.16 -1.31 16 14 C -0.13 -2.03 6.08 30.67 0.19 -1.85 16 15 C 0.10 1.97 6.35 86.36 0.55 2.52 16 16 N -0.61 -16.32 2.95 -794.92 -2.34 -18.67 16 17 C 0.52 19.53 6.31 87.66 0.55 20.08 16 18 O -0.52 -22.69 9.73 -3.02 -0.03 -22.72 16 19 C -0.13 -5.26 4.52 71.24 0.32 -4.94 16 20 S -0.14 -7.79 20.57 -56.49 -1.16 -8.96 16 21 C -0.55 -31.99 9.50 67.95 0.65 -31.35 16 22 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 23 C 0.02 0.94 5.49 84.86 0.47 1.41 16 24 N -0.91 -56.68 13.22 21.65 0.29 -56.40 16 25 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 26 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 29 H 0.11 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.11 1.71 7.84 -2.91 -0.02 1.69 16 31 H 0.10 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.08 1.69 7.79 -2.39 -0.02 1.67 16 33 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.34 8.45 8.73 -89.69 -0.78 7.67 16 37 H 0.02 0.62 5.97 -2.39 -0.01 0.61 16 38 H 0.05 1.98 5.04 -2.39 -0.01 1.97 16 39 H 0.09 3.13 5.57 -31.30 -0.17 2.96 16 40 H 0.07 1.58 6.92 -2.39 -0.02 1.56 16 41 H 0.05 0.78 6.75 -2.39 -0.02 0.76 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.74 5.93 -2.39 -0.01 1.73 16 50 H 0.10 3.75 7.69 -2.39 -0.02 3.73 16 51 H 0.09 3.64 7.94 -2.40 -0.02 3.62 16 52 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -74.01 408.93 1.40 -72.61 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.06 Total: 32.96 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 6.01 Total: -20.68 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -5.40 Total: -99.45 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.03 Total: -22.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.96 kcal Total: -74.01 1.40 -72.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565931818.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.429 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds