Wall clock time and date at job start Sat Apr 11 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99851 * 2 1 4 4 C 1.53002 * 109.46979 * 125.00346 * 3 2 1 5 5 N 1.46901 * 109.47004 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99993 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47215 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47000 * 185.27666 * 7 6 5 9 9 H 1.08994 * 109.58865 * 58.97504 * 8 7 6 10 10 C 1.53195 * 109.58407 * 298.69189 * 8 7 6 11 11 H 1.08999 * 109.49881 * 65.48693 * 10 8 7 12 12 C 1.52997 * 109.49845 * 305.42093 * 10 8 7 13 13 C 1.53047 * 109.33708 * 185.45312 * 10 8 7 14 14 C 1.53044 * 109.53767 * 61.31479 * 13 10 8 15 15 C 1.53183 * 109.34240 * 298.68537 * 14 13 10 16 16 N 1.46927 * 108.77707 * 54.61676 * 15 14 13 17 17 C 1.34775 * 120.62782 * 126.37157 * 16 15 14 18 18 O 1.21292 * 119.99861 * 185.15567 * 17 16 15 19 19 C 1.50696 * 120.00299 * 5.15281 * 17 16 15 20 20 S 1.81005 * 109.47116 * 179.97438 * 19 17 16 21 21 C 1.76200 * 100.00013 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99653 * 0.02562 * 21 20 19 23 23 C 1.38792 * 120.00391 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00368 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99824 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47258 * 89.99593 * 25 23 21 27 27 H 1.48500 * 109.47475 * 210.00018 * 25 23 21 28 28 H 1.48506 * 109.47060 * 329.99708 * 25 23 21 29 29 H 1.08001 * 119.99971 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99842 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99842 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47199 * 5.00046 * 3 2 1 33 33 H 1.09003 * 109.47149 * 244.99475 * 3 2 1 34 34 H 1.08994 * 109.47400 * 59.99823 * 4 3 2 35 35 H 1.09007 * 109.47037 * 299.99083 * 4 3 2 36 36 H 1.00897 * 111.00219 * 56.04183 * 5 4 3 37 37 H 1.08993 * 109.47450 * 59.99482 * 6 5 4 38 38 H 1.09004 * 109.46839 * 299.99805 * 6 5 4 39 39 H 1.08995 * 109.46925 * 65.27509 * 7 6 5 40 40 H 1.09001 * 109.46563 * 305.27376 * 7 6 5 41 41 H 1.08989 * 109.47292 * 60.06492 * 12 10 8 42 42 H 1.09001 * 109.47082 * 180.02562 * 12 10 8 43 43 H 1.09001 * 109.47094 * 300.06468 * 12 10 8 44 44 H 1.08999 * 109.45813 * 181.36821 * 13 10 8 45 45 H 1.08996 * 109.45870 * 301.32853 * 13 10 8 46 46 H 1.08995 * 109.49254 * 178.70984 * 14 13 10 47 47 H 1.09001 * 109.49126 * 58.65230 * 14 13 10 48 48 H 1.09000 * 109.58473 * 294.83413 * 15 14 13 49 49 H 1.08994 * 109.59159 * 174.40739 * 15 14 13 50 50 H 1.08991 * 109.47079 * 299.99984 * 19 17 16 51 51 H 1.08997 * 109.46866 * 60.00563 * 19 17 16 52 52 H 0.97004 * 119.99888 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7691 2.6055 1.1820 6 6 4.7132 2.6684 2.3057 7 6 5.4576 4.0047 2.2723 8 6 6.5319 4.0173 3.3616 9 1 7.2272 3.1940 3.1987 10 6 5.8715 3.8675 4.7358 11 1 5.4081 2.8839 4.8114 12 6 4.8041 4.9497 4.9102 13 6 6.9337 4.0171 5.8275 14 6 7.5627 5.4097 5.7423 15 6 8.2421 5.5770 4.3796 16 7 7.2608 5.2925 3.3237 17 6 7.0332 6.1845 2.3394 18 8 6.1557 5.9808 1.5273 19 6 7.8690 7.4352 2.2478 20 16 7.3249 8.4220 0.8314 21 6 8.4386 9.7814 0.9597 22 1 9.1699 9.8072 1.7540 23 6 8.3761 10.8190 0.0400 24 7 9.2078 11.8347 0.1362 25 14 7.1108 10.7748 -1.3334 26 1 5.8615 11.4350 -0.8770 27 1 7.6436 11.4903 -2.5207 28 1 6.8214 9.3637 -1.6946 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2357 2.1131 36 1 3.1340 3.3894 1.1994 37 1 5.4300 1.8514 2.2242 38 1 4.1667 2.5799 3.2447 39 1 4.7530 4.8176 2.4474 40 1 5.9273 4.1345 1.2973 41 1 4.0486 4.8436 4.1318 42 1 4.3349 4.8430 5.8882 43 1 5.2681 5.9331 4.8345 44 1 6.4702 3.8866 6.8054 45 1 7.7064 3.2610 5.6883 46 1 8.3028 5.5236 6.5343 47 1 6.7870 6.1668 5.8575 48 1 9.0770 4.8807 4.2996 49 1 8.6051 6.5994 4.2752 50 1 7.7537 8.0170 3.1622 51 1 8.9167 7.1633 2.1197 52 1 9.1643 12.5597 -0.5068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565931820.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:36 Heat of formation + Delta-G solvation = -36.050584 kcal Electronic energy + Delta-G solvation = -28001.115722 eV Core-core repulsion = 24319.343064 eV Total energy + Delta-G solvation = -3681.772658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79871 -38.82256 -38.01044 -35.91544 -34.69720 -34.62969 -33.63960 -31.04744 -30.67710 -28.51803 -27.83605 -27.49455 -25.52709 -24.28425 -23.10869 -22.09878 -21.46055 -20.61123 -19.90392 -19.14572 -17.83045 -17.20064 -17.09379 -16.98830 -16.79360 -16.36552 -15.92640 -15.85279 -15.56145 -15.27801 -14.99536 -14.92887 -14.60143 -14.49183 -14.18299 -14.13368 -13.76196 -13.61161 -13.37007 -13.34561 -13.06389 -13.02543 -12.93057 -12.65942 -12.46678 -12.41408 -12.24168 -11.95658 -11.90137 -11.86911 -11.78834 -11.57149 -11.33011 -11.20505 -11.17294 -10.50426 -10.24647 -10.06505 -9.49384 -9.30431 -8.98346 -8.51888 -6.21920 0.99116 1.30466 1.38758 1.46457 1.54954 1.61427 2.10724 2.24664 2.69449 2.86286 3.16419 3.59170 3.79432 3.84512 3.92335 3.95895 4.08714 4.18982 4.20104 4.22052 4.26724 4.31949 4.40894 4.43538 4.46008 4.51149 4.55936 4.60814 4.68192 4.70435 4.76513 4.82556 4.88825 4.92816 4.98807 5.07593 5.10443 5.15934 5.18892 5.25368 5.28273 5.36426 5.47907 5.52881 5.70310 5.73669 5.82084 5.87582 6.10583 6.15737 6.36003 6.41847 6.93411 7.21586 8.60527 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.002956 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.862638 B = 9470.864222 C =12167.510223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C -0.092 4.092 4 C 0.070 3.930 5 N -0.705 5.705 6 C 0.064 3.936 7 C -0.098 4.098 8 C 0.154 3.846 9 H 0.083 0.917 10 C -0.097 4.097 11 H 0.097 0.903 12 C -0.144 4.144 13 C -0.110 4.110 14 C -0.134 4.134 15 C 0.098 3.902 16 N -0.600 5.600 17 C 0.531 3.469 18 O -0.540 6.540 19 C -0.109 4.109 20 S -0.171 6.171 21 C -0.528 4.528 22 H 0.060 0.940 23 C 0.045 3.955 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.237 1.237 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.339 0.661 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.104 0.896 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 -25.267 12.252 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.177 4.177 3 C -0.130 4.130 4 C -0.059 4.059 5 N -0.336 5.336 6 C -0.066 4.066 7 C -0.136 4.136 8 C 0.051 3.949 9 H 0.101 0.899 10 C -0.116 4.116 11 H 0.115 0.885 12 C -0.201 4.201 13 C -0.147 4.147 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.334 5.334 17 C 0.318 3.682 18 O -0.418 6.418 19 C -0.259 4.259 20 S 0.055 5.945 21 C -0.676 4.676 22 H 0.078 0.922 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.161 1.161 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.107 0.893 49 H 0.099 0.901 50 H 0.122 0.878 51 H 0.122 0.878 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.967 -25.621 10.564 29.804 hybrid contribution 0.369 1.326 0.901 1.645 sum -10.598 -24.295 11.465 28.879 Atomic orbital electron populations 1.24027 0.95952 1.02495 1.00822 1.22970 0.96228 0.98338 1.00202 1.20704 0.97642 0.95701 0.98919 1.21861 0.95265 0.91971 0.96800 1.60395 1.22069 1.04796 1.46381 1.22053 0.95178 0.97899 0.91457 1.21905 0.97369 0.95903 0.98409 1.21385 0.93223 0.84414 0.95855 0.89876 1.21556 0.96276 1.00184 0.93610 0.88513 1.21845 0.98285 0.98564 1.01402 1.21548 0.97882 0.96718 0.98554 1.21954 1.00852 0.98366 0.96055 1.22024 0.91028 1.02717 0.86655 1.48037 1.41751 1.17865 1.25748 1.19912 0.83369 0.83852 0.81067 1.90762 1.32830 1.75806 1.42435 1.23340 1.03262 0.97276 1.02063 1.84659 1.49316 1.22530 1.37969 1.22460 1.20656 1.06779 1.17694 0.92175 1.25557 0.97275 0.93775 0.99393 1.70016 1.37869 1.09803 1.37784 0.85866 0.79611 0.81251 0.79635 1.18720 1.18348 1.16098 0.87239 0.88681 0.86408 0.91917 0.91032 0.90748 0.94949 0.84310 0.90870 0.94135 0.92430 0.92156 0.93718 0.91555 0.94214 0.90257 0.90387 0.88638 0.92304 0.89299 0.90075 0.87832 0.87791 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 14.32 67.78 0.97 -1.55 16 2 C -0.16 -2.22 9.52 25.65 0.24 -1.98 16 3 C -0.09 -1.52 5.92 29.85 0.18 -1.34 16 4 C 0.07 1.19 5.67 86.30 0.49 1.68 16 5 N -0.71 -15.23 6.50 -513.87 -3.34 -18.58 16 6 C 0.06 1.26 5.22 86.30 0.45 1.71 16 7 C -0.10 -2.53 2.94 30.59 0.09 -2.44 16 8 C 0.15 3.23 2.70 44.97 0.12 3.35 16 9 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 10 C -0.10 -1.50 2.32 -10.71 -0.02 -1.53 16 11 H 0.10 1.20 6.90 -2.39 -0.02 1.18 16 12 C -0.14 -2.75 8.20 71.98 0.59 -2.16 16 13 C -0.11 -1.31 5.43 30.62 0.17 -1.14 16 14 C -0.13 -1.94 5.74 30.67 0.18 -1.76 16 15 C 0.10 1.83 6.33 86.36 0.55 2.38 16 16 N -0.60 -15.08 2.41 -795.05 -1.92 -17.00 16 17 C 0.53 18.60 7.63 87.66 0.67 19.26 16 18 O -0.54 -22.30 11.28 -3.07 -0.03 -22.34 16 19 C -0.11 -4.23 4.56 71.23 0.32 -3.90 16 20 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 21 C -0.53 -31.14 10.04 67.95 0.68 -30.45 16 22 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 23 C 0.05 2.69 5.50 84.86 0.47 3.16 16 24 N -0.92 -56.27 13.97 21.65 0.30 -55.97 16 25 Si 0.91 45.61 27.74 68.60 1.90 47.52 16 26 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 29 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 30 H 0.09 1.22 7.84 -2.91 -0.02 1.19 16 31 H 0.12 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.06 1.05 7.79 -2.39 -0.02 1.04 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.34 7.61 8.73 -89.70 -0.78 6.82 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 0.69 6.89 -2.39 -0.02 0.67 16 39 H 0.06 1.76 5.23 -2.39 -0.01 1.75 16 40 H 0.06 2.06 6.40 -2.39 -0.02 2.04 16 41 H 0.04 0.96 6.33 -2.39 -0.02 0.95 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.04 0.93 5.97 -2.39 -0.01 0.92 16 44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.04 6.34 -2.39 -0.02 1.02 16 48 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.08 1.67 5.96 -2.39 -0.01 1.65 16 50 H 0.10 3.80 7.48 -2.40 -0.02 3.78 16 51 H 0.10 3.83 8.11 -2.40 -0.02 3.81 16 52 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -71.06 407.29 2.07 -68.99 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.07 Total: 23.91 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 6.14 Total: -16.72 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -4.96 Total: -91.54 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.03 Total: -22.34 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -71.06 2.07 -68.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565931820.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.938 kcal (2) G-P(sol) polarization free energy of solvation -71.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds