Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00057 * 2 1 4 4 C 1.52998 * 109.47216 * 124.99556 * 3 2 1 5 5 N 1.46899 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00057 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47117 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47102 * 173.19885 * 7 6 5 9 9 H 1.09000 * 109.69982 * 174.96259 * 8 7 6 10 10 C 1.52764 * 109.50557 * 54.84503 * 8 7 6 11 11 H 1.09001 * 109.38638 * 305.62641 * 10 8 7 12 12 C 1.52999 * 109.56557 * 65.67110 * 10 8 7 13 13 C 1.53047 * 109.37800 * 185.70333 * 10 8 7 14 14 C 1.53037 * 109.53674 * 61.24170 * 13 10 8 15 15 C 1.53188 * 109.31529 * 298.62879 * 14 13 10 16 16 N 1.46923 * 109.58918 * 295.31544 * 8 7 6 17 17 C 1.34775 * 120.63060 * 353.42210 * 16 8 7 18 18 O 1.21288 * 119.99874 * 353.92421 * 17 16 8 19 19 C 1.50695 * 120.00062 * 174.20388 * 17 16 8 20 20 S 1.81002 * 109.47247 * 179.72194 * 19 17 16 21 21 C 1.76198 * 100.00061 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00143 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99958 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00251 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00258 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46677 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47072 * 119.99692 * 25 23 21 28 28 H 1.48492 * 109.47284 * 239.99871 * 25 23 21 29 29 H 1.07996 * 120.00147 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.00284 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00147 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46971 * 4.99998 * 3 2 1 33 33 H 1.08996 * 109.46885 * 244.99904 * 3 2 1 34 34 H 1.09004 * 109.46790 * 60.00331 * 4 3 2 35 35 H 1.08996 * 109.47478 * 299.99984 * 4 3 2 36 36 H 1.00900 * 111.00034 * 303.95395 * 5 4 3 37 37 H 1.09005 * 109.47263 * 60.00413 * 6 5 4 38 38 H 1.08997 * 109.47211 * 299.99611 * 6 5 4 39 39 H 1.09003 * 109.46492 * 53.20233 * 7 6 5 40 40 H 1.08997 * 109.47105 * 293.20118 * 7 6 5 41 41 H 1.08999 * 109.46914 * 179.97438 * 12 10 8 42 42 H 1.08996 * 109.46795 * 299.96318 * 12 10 8 43 43 H 1.09001 * 109.46941 * 59.96300 * 12 10 8 44 44 H 1.08993 * 109.46088 * 301.22013 * 13 10 8 45 45 H 1.08999 * 109.45618 * 181.26095 * 13 10 8 46 46 H 1.09009 * 109.49842 * 178.68116 * 14 13 10 47 47 H 1.09000 * 109.52790 * 58.60027 * 14 13 10 48 48 H 1.08999 * 109.59102 * 294.85527 * 15 14 13 49 49 H 1.08997 * 109.59134 * 174.42146 * 15 14 13 50 50 H 1.09002 * 109.47331 * 299.71990 * 19 17 16 51 51 H 1.09003 * 109.47556 * 59.72432 * 19 17 16 52 52 H 0.96998 * 119.99985 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 7 3.7690 2.6056 1.1820 6 6 4.7138 2.6680 2.3051 7 6 5.4582 4.0043 2.2716 8 6 6.3159 4.1420 3.5311 9 1 6.9158 5.0500 3.4697 10 6 7.2386 2.9307 3.6548 11 1 6.6438 2.0179 3.6205 12 6 8.2416 2.9306 2.4995 13 6 7.9919 2.9999 4.9853 14 6 6.9909 2.9670 6.1424 15 6 6.0658 4.1843 6.0469 16 7 5.4472 4.2047 4.7143 17 6 4.1079 4.2737 4.5800 18 8 3.6144 4.3957 3.4788 19 6 3.2239 4.2057 5.7985 20 16 1.4902 4.3322 5.2940 21 6 0.7052 4.2284 6.8680 22 1 1.3007 4.1201 7.7624 23 6 -0.6787 4.2848 6.9584 24 7 -1.4047 4.4163 5.8682 25 14 -1.5112 4.1740 8.6270 26 1 -0.4799 4.0318 9.6861 27 1 -2.3013 5.4079 8.8688 28 1 -2.4138 2.9952 8.6527 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4026 -0.9313 34 1 3.7399 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 4.2427 2.7500 0.3029 37 1 5.4307 1.8510 2.2227 38 1 4.1680 2.5792 3.2444 39 1 4.7372 4.8209 2.2320 40 1 6.0983 4.0417 1.3902 41 1 8.8993 2.0661 2.5895 42 1 7.7047 2.8813 1.5522 43 1 8.8353 3.8441 2.5336 44 1 8.5673 3.9245 5.0291 45 1 8.6671 2.1480 5.0649 46 1 7.5292 2.9927 7.0900 47 1 6.3980 2.0542 6.0855 48 1 6.6448 5.0959 6.1948 49 1 5.2896 4.1142 6.8089 50 1 3.3847 3.2576 6.3116 51 1 3.4676 5.0285 6.4706 52 1 -2.3718 4.4560 5.9314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565931821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -1.935281 kcal Electronic energy + Delta-G solvation = -28821.269089 eV Core-core repulsion = 25140.975781 eV Total energy + Delta-G solvation = -3680.293308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72086 -37.44966 -36.78664 -34.85113 -33.63492 -32.59741 -32.38149 -30.17203 -29.12072 -27.31968 -26.37043 -25.45103 -24.48943 -22.85050 -22.01311 -21.28811 -20.25998 -19.61686 -18.69422 -17.50917 -16.64969 -16.01347 -15.73643 -15.55616 -15.06126 -14.82090 -14.77197 -14.54590 -14.02650 -13.93502 -13.90963 -13.54994 -13.39241 -13.21220 -12.94901 -12.71283 -12.53987 -12.51663 -12.10630 -11.91124 -11.82877 -11.53308 -11.43830 -11.15539 -11.07460 -11.05003 -10.96044 -10.85174 -10.77319 -10.72525 -10.52687 -10.45697 -10.21477 -9.74102 -9.21599 -9.03504 -8.44153 -8.31664 -8.13634 -7.93269 -6.42793 -6.17749 -3.86721 2.38721 3.00406 3.15224 3.23264 3.28679 3.33054 3.66772 4.24143 4.35741 4.57112 4.64087 4.70178 4.88760 5.02845 5.11182 5.16970 5.17291 5.23757 5.26777 5.31899 5.38661 5.40526 5.43691 5.54174 5.55796 5.57700 5.60145 5.65292 5.72838 5.74935 5.81334 5.85467 5.89551 5.93173 5.97770 6.00717 6.02292 6.07020 6.18398 6.23809 6.29552 6.32138 6.49359 6.61062 6.73328 6.89512 6.96850 7.42392 7.63303 7.70875 7.74935 8.39002 8.74338 9.27807 10.89404 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007129 B = 0.004364 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3926.638751 B = 6415.022398 C = 9657.853494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C -0.091 4.091 4 C 0.068 3.932 5 N -0.672 5.672 6 C 0.078 3.922 7 C -0.127 4.127 8 C 0.160 3.840 9 H 0.067 0.933 10 C -0.110 4.110 11 H 0.077 0.923 12 C -0.143 4.143 13 C -0.113 4.113 14 C -0.136 4.136 15 C 0.109 3.891 16 N -0.618 5.618 17 C 0.523 3.477 18 O -0.478 6.478 19 C -0.153 4.153 20 S -0.053 6.053 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.866 5.866 25 Si 0.915 3.085 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.327 0.673 37 H 0.004 0.996 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.858 -5.426 -6.417 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.174 4.174 3 C -0.128 4.128 4 C -0.061 4.061 5 N -0.301 5.301 6 C -0.050 4.050 7 C -0.164 4.164 8 C 0.056 3.944 9 H 0.084 0.916 10 C -0.129 4.129 11 H 0.096 0.904 12 C -0.201 4.201 13 C -0.150 4.150 14 C -0.175 4.175 15 C -0.015 4.015 16 N -0.355 5.355 17 C 0.311 3.689 18 O -0.352 6.352 19 C -0.304 4.304 20 S 0.174 5.826 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.742 3.258 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.022 0.978 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.102 0.898 51 H 0.103 0.897 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.424 -4.874 -7.786 19.697 hybrid contribution 0.844 -1.015 2.285 2.639 sum 18.268 -5.889 -5.501 19.966 Atomic orbital electron populations 1.23894 0.96020 1.01940 1.00723 1.22864 0.96076 0.98186 1.00304 1.20710 0.98641 0.95736 0.97737 1.21838 0.95421 0.89460 0.99400 1.60263 1.30636 1.33824 1.05376 1.22139 0.92319 0.94579 0.95978 1.22248 0.98299 1.01723 0.94136 1.21076 0.90901 0.96840 0.85564 0.91554 1.21587 0.96672 0.99620 0.95006 0.90439 1.21791 0.98613 1.01612 0.98095 1.21570 0.97490 1.01890 0.94090 1.21930 0.97821 0.99026 0.98676 1.21686 0.97126 0.97825 0.84853 1.48087 1.05585 1.75571 1.06210 1.20253 0.81429 0.76243 0.90985 1.90799 1.73689 1.45446 1.25258 1.23622 1.03579 1.04226 0.98981 1.85420 0.89737 1.95719 1.11715 1.22922 0.94180 1.57983 0.93318 0.91116 1.24960 0.96287 0.94654 0.97562 1.70030 1.06070 1.46685 1.27401 0.86173 0.79235 0.77904 0.82524 1.19675 1.20598 1.20616 0.88205 0.88788 0.87943 0.90193 0.91767 0.96469 0.90536 0.85680 0.97842 0.89909 0.85969 0.93547 0.92736 0.92277 0.92650 0.91934 0.91981 0.90915 0.91433 0.91706 0.89335 0.89849 0.89740 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 14.32 29.02 0.42 -1.92 16 2 C -0.16 -1.92 9.52 -36.02 -0.34 -2.26 16 3 C -0.09 -1.19 5.92 -27.88 -0.17 -1.35 16 4 C 0.07 0.99 5.67 -3.83 -0.02 0.97 16 5 N -0.67 -10.13 6.47 -113.78 -0.74 -10.87 16 6 C 0.08 1.17 3.79 -3.82 -0.01 1.15 16 7 C -0.13 -1.73 4.36 -26.73 -0.12 -1.85 16 8 C 0.16 1.93 2.64 -67.82 -0.18 1.75 16 9 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 10 C -0.11 -1.09 2.01 -90.72 -0.18 -1.27 16 11 H 0.08 0.90 6.17 -51.93 -0.32 0.57 16 12 C -0.14 -1.19 8.97 37.16 0.33 -0.85 16 13 C -0.11 -0.97 5.17 -26.69 -0.14 -1.11 16 14 C -0.14 -1.26 6.08 -26.61 -0.16 -1.42 16 15 C 0.11 1.20 6.35 -3.71 -0.02 1.18 16 16 N -0.62 -8.54 2.93 -165.47 -0.48 -9.03 16 17 C 0.52 9.48 6.13 -10.99 -0.07 9.42 16 18 O -0.48 -9.87 9.81 5.55 0.05 -9.81 16 19 C -0.15 -3.10 4.51 36.00 0.16 -2.94 16 20 S -0.05 -1.41 20.57 -107.50 -2.21 -3.63 16 21 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 30 H 0.09 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.10 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.33 4.21 8.73 -39.29 -0.34 3.87 16 37 H 0.00 0.05 6.64 -51.93 -0.34 -0.29 16 38 H 0.08 1.51 5.14 -51.93 -0.27 1.25 16 39 H 0.12 2.10 5.69 -53.17 -0.30 1.80 16 40 H 0.05 0.54 6.85 -51.93 -0.36 0.19 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.51 6.71 -51.93 -0.35 0.16 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 50 H 0.08 1.60 7.93 -51.91 -0.41 1.19 16 51 H 0.08 1.61 7.70 -51.91 -0.40 1.21 16 52 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 409.21 15.07 6.17 6.17 Total: -1.00 -32.10 409.21 -11.06 -43.17 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -9.26 Total: 6.39 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.30 Total: -13.45 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.49 Total: -45.33 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.05 Total: -9.81 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.10 -11.06 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565931821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.231 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds