Wall clock time and date at job start Sat Apr 11 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46900 * 111.00138 * 2 1 4 4 C 1.52998 * 109.47318 * 293.95555 * 3 2 1 5 5 N 1.46493 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99764 * 270.00348 * 5 4 3 7 7 C 1.34774 * 120.00319 * 90.00081 * 5 4 3 8 8 O 1.21281 * 119.99915 * 359.97438 * 7 5 4 9 9 C 1.50700 * 120.00300 * 180.02562 * 7 5 4 10 10 S 1.81000 * 109.47279 * 179.97438 * 9 7 5 11 11 C 1.76203 * 99.99909 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99805 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.99592 * 179.97438 * 11 10 9 14 14 N 1.31636 * 119.99861 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00491 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47033 * 89.99796 * 15 13 11 17 17 H 1.48502 * 109.47522 * 209.99817 * 15 13 11 18 18 H 1.48499 * 109.46935 * 330.00078 * 15 13 11 19 19 C 1.46906 * 111.00125 * 123.95717 * 2 1 3 20 20 C 1.53001 * 109.47066 * 75.81503 * 19 2 1 21 21 H 1.09000 * 109.61386 * 305.76644 * 20 19 2 22 22 C 1.53298 * 109.61392 * 185.40931 * 20 19 2 23 23 C 1.52878 * 108.57779 * 165.64529 * 22 20 19 24 24 C 1.52707 * 110.04357 * 54.59225 * 23 22 20 25 25 H 1.08996 * 115.39334 * 128.72009 * 24 23 22 26 26 C 1.53816 * 115.93644 * 269.59528 * 24 23 22 27 27 C 1.51883 * 120.64192 * 338.32256 * 24 23 22 28 28 H 1.09009 * 115.91418 * 150.13205 * 27 24 23 29 29 C 1.52074 * 119.97274 * 5.52885 * 27 24 23 30 30 H 1.09006 * 109.47227 * 301.84311 * 1 2 3 31 31 H 1.08999 * 109.47676 * 61.84711 * 1 2 3 32 32 H 1.09006 * 109.47291 * 181.84730 * 1 2 3 33 33 H 1.09004 * 109.47000 * 53.95770 * 3 2 1 34 34 H 1.09010 * 109.46914 * 173.95398 * 3 2 1 35 35 H 1.08997 * 109.46934 * 299.99923 * 4 3 2 36 36 H 1.08998 * 109.47188 * 59.99652 * 4 3 2 37 37 H 1.08991 * 109.47326 * 89.99934 * 6 5 4 38 38 H 1.09006 * 109.47074 * 209.99801 * 6 5 4 39 39 H 1.08998 * 109.47125 * 329.99034 * 6 5 4 40 40 H 1.09001 * 109.47143 * 299.99928 * 9 7 5 41 41 H 1.08997 * 109.47535 * 59.99394 * 9 7 5 42 42 H 0.97003 * 119.99938 * 180.02562 * 14 13 11 43 43 H 1.08998 * 109.46941 * 315.81241 * 19 2 1 44 44 H 1.08998 * 109.46916 * 195.81503 * 19 2 1 45 45 H 1.09003 * 109.62059 * 45.91881 * 22 20 19 46 46 H 1.09006 * 109.77062 * 285.45832 * 22 20 19 47 47 H 1.09003 * 109.35627 * 174.73407 * 23 22 20 48 48 H 1.09000 * 109.36096 * 294.44599 * 23 22 20 49 49 H 1.09001 * 117.55624 * 4.54323 * 26 24 23 50 50 H 1.08992 * 117.58561 * 219.18518 * 26 24 23 51 51 H 1.09000 * 109.26761 * 217.92057 * 29 27 24 52 52 H 1.08999 * 109.23851 * 98.43252 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1559 3.4253 -1.3179 6 6 1.3354 4.5243 -0.8027 7 6 3.3932 3.6727 -1.7916 8 8 4.0726 2.7629 -2.2176 9 6 3.9329 5.0797 -1.7908 10 16 5.6054 5.0848 -2.4828 11 6 5.9801 6.8025 -2.3649 12 1 5.2526 7.4869 -1.9542 13 6 7.2107 7.2756 -2.7988 14 7 7.4909 8.5588 -2.7103 15 14 8.4693 6.0917 -3.5084 16 1 8.2730 5.9819 -4.9763 17 1 9.8373 6.5970 -3.2283 18 1 8.2980 4.7549 -2.8847 19 6 1.9954 -0.7661 1.1376 20 6 1.8482 -2.2628 0.8564 21 1 0.8104 -2.4887 0.6114 22 6 2.2708 -3.0629 2.0938 23 6 1.7860 -4.5036 1.9313 24 6 2.2965 -5.0821 0.6134 25 1 2.8018 -6.0447 0.6901 26 6 1.3787 -4.8901 -0.6059 27 6 2.7161 -4.1661 -0.5231 28 1 3.4952 -4.5502 -1.1817 29 6 2.7497 -2.6604 -0.3124 30 1 -0.3634 0.5422 0.8730 31 1 -0.3634 0.4849 -0.9060 32 1 -0.3634 -1.0272 0.0331 33 1 1.5611 1.9273 0.8310 34 1 3.0797 1.3443 0.1083 35 1 2.0657 1.5016 -2.1491 36 1 0.5471 2.0845 -1.4265 37 1 1.5214 4.6473 0.2641 38 1 1.5929 5.4458 -1.3251 39 1 0.2816 4.2976 -0.9642 40 1 3.2874 5.7169 -2.3952 41 1 3.9619 5.4573 -0.7687 42 1 8.3507 8.8895 -3.0139 43 1 1.4377 -0.5089 2.0380 44 1 3.0487 -0.5253 1.2814 45 1 1.8215 -2.6238 2.9846 46 1 3.3567 -3.0506 2.1877 47 1 2.1597 -5.1061 2.7592 48 1 0.6961 -4.5207 1.9353 49 1 0.4749 -4.2965 -0.4683 50 1 1.2963 -5.7173 -1.3108 51 1 2.4044 -2.1626 -1.2186 52 1 3.7727 -2.3503 -0.0993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568474597.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:58 Heat of formation + Delta-G solvation = -37.093519 kcal Electronic energy + Delta-G solvation = -27345.049166 eV Core-core repulsion = 23663.231282 eV Total energy + Delta-G solvation = -3681.817883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00250 -40.65206 -38.55925 -36.57975 -34.67569 -34.43253 -32.20872 -31.53764 -29.62691 -28.18692 -27.86471 -27.53281 -26.03651 -24.46566 -22.74770 -22.32681 -21.31706 -20.65013 -19.56154 -19.39451 -18.13190 -17.46738 -17.15884 -17.08026 -16.72574 -16.35864 -16.22779 -15.61872 -15.33580 -15.19662 -14.98482 -14.92085 -14.66506 -14.32636 -14.30025 -13.98715 -13.65405 -13.61624 -13.37307 -13.20283 -13.16107 -13.05661 -12.98232 -12.89909 -12.68465 -12.65979 -12.53312 -12.12569 -11.92495 -11.83904 -11.65460 -11.44512 -11.18523 -11.17567 -10.94845 -10.59416 -10.52618 -10.48162 -9.77523 -9.25078 -9.00841 -8.52022 -6.22888 0.97446 1.30732 1.45517 1.51804 1.54390 2.04690 2.24629 2.67857 2.86098 2.87292 3.01686 3.58530 3.70841 3.75084 3.89643 3.98376 4.05711 4.07888 4.15245 4.18871 4.24631 4.29680 4.39415 4.42275 4.43848 4.47237 4.55374 4.64740 4.66136 4.68249 4.70742 4.75448 4.82545 4.90683 4.92371 4.94566 4.98640 5.05675 5.09834 5.14304 5.20540 5.26282 5.37413 5.41306 5.50161 5.51033 5.56129 5.70392 6.06382 6.10741 6.12900 6.24355 6.93263 7.09340 8.60184 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.002083 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.047582 B =13440.206210 C =14535.483920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.547 5.547 3 C 0.053 3.947 4 C 0.125 3.875 5 N -0.610 5.610 6 C 0.070 3.930 7 C 0.530 3.470 8 O -0.559 6.559 9 C -0.105 4.105 10 S -0.179 6.179 11 C -0.527 4.527 12 H 0.063 0.937 13 C 0.046 3.954 14 N -0.916 5.916 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.238 1.238 19 C 0.063 3.937 20 C -0.071 4.071 21 H 0.076 0.924 22 C -0.114 4.114 23 C -0.084 4.084 24 C -0.150 4.150 25 H 0.103 0.897 26 C -0.181 4.181 27 C -0.150 4.150 28 H 0.090 0.910 29 C -0.071 4.071 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.277 0.723 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.062 0.938 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.454 -24.300 10.825 33.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.076 4.076 4 C 0.002 3.998 5 N -0.344 5.344 6 C -0.072 4.072 7 C 0.317 3.683 8 O -0.437 6.437 9 C -0.256 4.256 10 S 0.047 5.953 11 C -0.674 4.674 12 H 0.081 0.919 13 C -0.160 4.160 14 N -0.553 5.553 15 Si 0.735 3.265 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.162 1.162 19 C -0.065 4.065 20 C -0.090 4.090 21 H 0.094 0.906 22 C -0.152 4.152 23 C -0.122 4.122 24 C -0.168 4.168 25 H 0.121 0.879 26 C -0.218 4.218 27 C -0.168 4.168 28 H 0.108 0.892 29 C -0.109 4.109 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.113 0.887 51 H 0.080 0.920 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.215 -25.701 9.751 33.538 hybrid contribution 0.024 1.691 0.706 1.833 sum -19.190 -24.010 10.457 32.467 Atomic orbital electron populations 1.22537 0.86048 1.02708 1.01390 1.61801 1.09061 1.12370 1.43921 1.22295 0.99260 0.88865 0.97180 1.21449 0.99892 0.80672 0.97745 1.47812 1.14593 1.09736 1.62244 1.22130 0.96312 0.88865 0.99876 1.20066 0.81797 0.89542 0.76861 1.90691 1.58456 1.47078 1.47487 1.23283 0.98801 0.97550 1.05951 1.84754 1.16262 1.11023 1.83251 1.22436 1.05103 0.91803 1.48103 0.91862 1.25549 0.99275 0.96540 0.94613 1.70015 1.24473 1.14251 1.46607 0.85879 0.79332 0.80997 0.80242 1.18705 1.18284 1.16218 1.22185 0.99526 0.93696 0.91109 1.21090 0.99930 0.92786 0.95152 0.90570 1.21597 1.01040 0.95261 0.97267 1.21021 1.00560 0.95415 0.95171 1.22330 1.03517 1.00290 0.90677 0.87918 1.23183 0.94159 1.02990 1.01498 1.21840 0.98916 0.94383 1.01657 0.89179 1.20685 0.99035 0.92349 0.98798 0.94834 0.90565 0.90614 0.93638 0.93439 0.91680 0.87388 0.91338 0.90654 0.87877 0.86955 0.87163 0.91367 0.93584 0.92395 0.90948 0.92413 0.90741 0.91106 0.88626 0.88713 0.91955 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.12 127.69 1.16 1.42 16 2 N -0.55 -9.81 4.30 -922.44 -3.97 -13.77 16 3 C 0.05 1.12 5.26 86.30 0.45 1.57 16 4 C 0.13 2.71 5.37 86.38 0.46 3.18 16 5 N -0.61 -15.20 2.87 -846.78 -2.43 -17.63 16 6 C 0.07 1.14 10.29 127.77 1.31 2.45 16 7 C 0.53 18.94 7.69 87.66 0.67 19.62 16 8 O -0.56 -24.73 15.44 -3.03 -0.05 -24.78 16 9 C -0.11 -4.04 4.71 71.24 0.34 -3.70 16 10 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 11 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16 12 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 13 C 0.05 2.70 5.50 84.86 0.47 3.17 16 14 N -0.92 -55.85 13.97 21.65 0.30 -55.54 16 15 Si 0.91 45.47 27.74 68.60 1.90 47.38 16 16 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.24 -11.91 6.74 99.48 0.67 -11.23 16 19 C 0.06 1.04 4.38 86.30 0.38 1.42 16 20 C -0.07 -1.05 1.99 -10.74 -0.02 -1.07 16 21 H 0.08 1.07 5.66 -2.39 -0.01 1.05 16 22 C -0.11 -1.45 5.26 30.65 0.16 -1.29 16 23 C -0.08 -0.96 5.84 30.46 0.18 -0.78 16 24 C -0.15 -2.03 6.18 -10.98 -0.07 -2.10 16 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 26 C -0.18 -2.49 9.67 30.64 0.30 -2.19 16 27 C -0.15 -2.47 5.99 -11.70 -0.07 -2.54 16 28 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 29 C -0.07 -1.32 5.08 30.25 0.15 -1.17 16 30 H 0.03 0.37 8.13 -2.38 -0.02 0.35 16 31 H 0.08 0.85 6.56 -2.39 -0.02 0.83 16 32 H 0.08 0.84 6.65 -2.38 -0.02 0.82 16 33 H 0.05 0.83 8.11 -2.38 -0.02 0.81 16 34 H 0.05 1.32 7.83 -2.38 -0.02 1.30 16 35 H 0.06 1.82 7.42 -2.39 -0.02 1.80 16 36 H 0.11 1.59 6.34 -2.39 -0.02 1.58 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.30 6.44 -2.38 -0.02 1.28 16 39 H 0.10 1.02 7.89 -2.39 -0.02 1.00 16 40 H 0.11 3.96 7.40 -2.39 -0.02 3.94 16 41 H 0.11 3.92 8.11 -2.40 -0.02 3.90 16 42 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.05 0.67 7.94 -2.39 -0.02 0.65 16 44 H 0.06 1.15 7.73 -2.39 -0.02 1.14 16 45 H 0.07 0.78 8.03 -2.39 -0.02 0.76 16 46 H 0.06 0.85 8.05 -2.38 -0.02 0.83 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.72 8.05 -2.39 -0.02 0.70 16 49 H 0.10 1.26 7.26 -2.39 -0.02 1.24 16 50 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.06 1.35 7.93 -2.39 -0.02 1.34 16 52 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.87 412.93 2.11 -70.77 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.84 Total: 16.04 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 6.56 Total: -12.18 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -6.10 Total: -86.95 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -72.87 2.11 -70.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568474597.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.672 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds