Wall clock time and date at job start Sat Apr 11 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81400 * 103.00150 * 2 1 4 4 H 1.09005 * 109.47447 * 54.99773 * 3 2 1 5 5 C 1.53002 * 109.47064 * 295.00036 * 3 2 1 6 6 C 1.53002 * 109.47551 * 175.00131 * 3 2 1 7 7 C 1.50697 * 109.47004 * 295.00070 * 6 3 2 8 8 O 1.21292 * 119.99739 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00177 * 180.02562 * 7 6 3 10 10 C 1.44574 * 118.77292 * 359.97438 * 9 7 6 11 11 C 1.54699 * 109.59284 * 270.64244 * 10 9 7 12 12 C 1.47011 * 110.65294 * 288.16101 * 11 10 9 13 13 C 1.52955 * 114.32972 * 62.93792 * 12 11 10 14 14 C 1.50568 * 109.10838 * 276.13298 * 13 12 11 15 15 C 1.53950 * 111.48509 * 214.27631 * 14 13 12 16 16 C 1.54147 * 104.90917 * 98.48462 * 15 14 13 17 17 N 1.47537 * 107.05323 * 358.24208 * 16 15 14 18 18 C 1.36940 * 126.98487 * 205.27060 * 17 16 15 19 19 H 1.08002 * 119.99580 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00245 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00310 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 90.00038 * 22 20 18 24 24 H 1.48494 * 109.47299 * 210.00179 * 22 20 18 25 25 H 1.48500 * 109.46787 * 330.00364 * 22 20 18 26 26 C 1.48229 * 106.02311 * 25.30766 * 17 16 15 27 27 C 1.47592 * 118.77408 * 179.97438 * 9 7 6 28 28 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47227 * 300.00059 * 1 2 3 30 30 H 1.08996 * 109.47498 * 59.99922 * 1 2 3 31 31 H 1.09000 * 109.47108 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47309 * 299.99664 * 5 3 2 33 33 H 1.09006 * 109.47049 * 59.99762 * 5 3 2 34 34 H 1.08998 * 109.46941 * 174.99896 * 6 3 2 35 35 H 1.08995 * 109.46862 * 54.99908 * 6 3 2 36 36 H 1.08993 * 109.45037 * 30.67974 * 10 9 7 37 37 H 1.08994 * 109.45084 * 150.63371 * 10 9 7 38 38 H 1.08998 * 109.23824 * 48.46177 * 11 10 9 39 39 H 1.08998 * 109.23643 * 167.86020 * 11 10 9 40 40 H 1.09000 * 108.51344 * 184.18199 * 12 11 10 41 41 H 1.09004 * 108.50832 * 301.66994 * 12 11 10 42 42 H 1.08997 * 109.52156 * 156.25427 * 13 12 11 43 43 H 1.09003 * 109.53851 * 36.02545 * 13 12 11 44 44 H 1.08998 * 110.35659 * 339.62794 * 15 14 13 45 45 H 1.08997 * 110.35511 * 217.34343 * 15 14 13 46 46 H 1.09004 * 109.91459 * 117.59077 * 16 15 14 47 47 H 1.09004 * 109.91855 * 238.88833 * 16 15 14 48 48 H 0.96995 * 120.00474 * 179.97438 * 21 20 18 49 49 H 1.08999 * 110.66459 * 79.84811 * 26 17 16 50 50 H 1.09003 * 110.66276 * 202.80863 * 26 17 16 51 51 H 1.08998 * 108.99215 * 17.42732 * 27 9 7 52 52 H 1.08999 * 108.92559 * 258.63679 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4271 1.4672 8 8 3.3839 0.9673 2.2462 9 7 5.4964 1.4790 1.8016 10 6 6.4365 2.0327 0.8531 11 6 6.9617 0.9100 -0.0725 12 6 7.8722 0.0178 0.6597 13 6 7.2194 -0.7337 1.8210 14 6 7.2118 0.1516 3.0388 15 6 7.3968 -0.6650 4.3307 16 6 8.8934 -0.5300 4.6744 17 7 9.5112 0.2794 3.6066 18 6 10.8243 0.2667 3.2184 19 1 11.1570 0.9108 2.4179 20 6 11.7278 -0.5741 3.8537 21 7 11.3224 -1.3595 4.8289 22 14 13.5190 -0.5919 3.3237 23 1 14.2785 0.4114 4.1122 24 1 14.0912 -1.9420 3.5582 25 1 13.6111 -0.2593 1.8794 26 6 8.4217 1.1096 3.0402 27 6 5.9120 0.9684 3.1226 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.9876 3.4637 -1.3072 32 1 2.2354 1.9150 -2.1492 33 1 0.6634 2.2778 -1.3969 34 1 3.9901 2.9977 0.0365 35 1 4.2338 1.3805 -0.6659 36 1 5.9401 2.7953 0.2531 37 1 7.2726 2.4806 1.3901 38 1 6.1183 0.3316 -0.4497 39 1 7.4944 1.3565 -0.9121 40 1 8.2783 -0.7125 -0.0402 41 1 8.6976 0.6119 1.0520 42 1 7.7865 -1.6401 2.0330 43 1 6.1955 -0.9968 1.5553 44 1 7.1402 -1.7103 4.1586 45 1 6.7850 -0.2507 5.1320 46 1 9.0100 -0.0285 5.6351 47 1 9.3570 -1.5159 4.7084 48 1 11.9536 -1.9473 5.2726 49 1 8.2271 1.9741 3.6750 50 1 8.6665 1.4258 2.0262 51 1 5.1204 0.3352 3.5232 52 1 6.0657 1.8121 3.7954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569622176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:02 Heat of formation + Delta-G solvation = 4.724077 kcal Electronic energy + Delta-G solvation = -29630.508550 eV Core-core repulsion = 25950.504014 eV Total energy + Delta-G solvation = -3680.004536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64316 -38.67845 -35.98608 -34.82716 -33.43710 -33.01205 -30.65049 -29.45553 -28.75852 -28.10005 -26.85530 -25.47380 -24.86280 -23.23686 -22.21686 -21.25031 -19.84282 -18.86444 -17.98599 -17.08984 -16.85615 -16.75796 -16.31467 -15.57468 -15.04497 -14.79151 -14.68611 -14.20544 -13.96252 -13.85084 -13.66484 -13.54551 -13.16119 -13.06559 -12.97581 -12.85472 -12.56382 -12.38333 -12.07536 -11.87027 -11.76346 -11.69470 -11.56668 -11.42229 -11.29768 -10.94996 -10.84666 -10.76132 -10.41095 -10.11430 -10.08898 -9.93486 -9.86001 -9.64779 -9.52927 -9.48508 -9.18663 -8.64576 -8.41023 -7.56044 -6.83134 -5.63436 -3.03953 1.57553 2.46984 2.76337 3.13217 3.39909 3.44588 3.46922 4.36541 4.38690 4.49706 4.79445 4.88860 4.93901 4.95414 4.98919 5.05107 5.05949 5.18712 5.23636 5.27131 5.33780 5.36588 5.48314 5.51649 5.57769 5.61381 5.63700 5.76235 5.78878 5.80357 5.92348 6.00732 6.10419 6.14859 6.23529 6.34263 6.34449 6.44981 6.49859 6.62887 6.75422 6.77170 6.95456 7.02847 7.07169 7.53487 7.57041 7.60979 7.87868 8.33159 8.38095 9.21632 9.83309 10.54229 11.41306 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.002769 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.680911 B =10109.845284 C =10510.314140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.234 6.234 3 C -0.045 4.045 4 H 0.092 0.908 5 C -0.148 4.148 6 C -0.124 4.124 7 C 0.504 3.496 8 O -0.525 6.525 9 N -0.598 5.598 10 C 0.102 3.898 11 C -0.130 4.130 12 C -0.143 4.143 13 C -0.080 4.080 14 C -0.082 4.082 15 C -0.129 4.129 16 C 0.147 3.853 17 N -0.597 5.597 18 C -0.217 4.217 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.121 3.879 27 C 0.127 3.873 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.008 0.992 47 H 0.103 0.897 48 H 0.251 0.749 49 H 0.016 0.984 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 7.656 -12.483 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.008 6.008 3 C -0.174 4.174 4 H 0.110 0.890 5 C -0.207 4.207 6 C -0.165 4.165 7 C 0.291 3.709 8 O -0.401 6.401 9 N -0.330 5.330 10 C -0.022 4.022 11 C -0.169 4.169 12 C -0.180 4.180 13 C -0.118 4.118 14 C -0.084 4.084 15 C -0.169 4.169 16 C 0.022 3.978 17 N -0.321 5.321 18 C -0.345 4.345 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.005 4.005 27 C 0.006 3.994 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.026 0.974 47 H 0.121 0.879 48 H 0.062 0.938 49 H 0.034 0.966 50 H 0.088 0.912 51 H 0.104 0.896 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.033 6.423 -11.988 22.587 hybrid contribution 0.183 1.023 -0.160 1.051 sum -17.850 7.446 -12.149 22.840 Atomic orbital electron populations 1.23373 0.95398 1.06166 1.04444 1.87060 1.06070 1.09996 1.97690 1.22884 0.98036 0.95278 1.01232 0.88964 1.22111 1.01449 1.00866 0.96236 1.21604 0.94277 1.03452 0.97143 1.20476 0.82504 0.79234 0.88711 1.90729 1.52513 1.44960 1.51875 1.47674 1.06536 1.61234 1.17593 1.21720 0.93676 0.95418 0.91382 1.21226 0.99889 0.97594 0.98158 1.20824 1.00193 0.99392 0.97597 1.20793 0.99414 0.98202 0.93367 1.21434 0.93982 0.96562 0.96407 1.22709 1.00437 0.98593 0.95117 1.21680 0.87076 0.99505 0.89528 1.44777 1.04143 1.44058 1.39096 1.19011 0.82651 1.18689 1.14170 0.90569 1.24764 0.98117 0.99349 0.98473 1.69781 1.32902 1.28185 1.26027 0.86130 0.84920 0.76918 0.77871 1.21757 1.21745 1.20758 1.22404 0.88050 0.92525 0.97495 1.22015 0.97272 0.97847 0.82300 0.88387 0.90657 0.90956 0.91628 0.91201 0.92333 0.87796 0.88044 0.90967 0.89512 0.92464 0.91305 0.92985 0.88662 0.91495 0.93192 0.92322 0.92968 0.97406 0.87873 0.93795 0.96599 0.91208 0.89620 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 10.45 101.05 1.06 0.01 16 2 S -0.23 -2.76 20.24 -107.50 -2.18 -4.93 16 3 C -0.05 -0.43 2.44 -26.73 -0.07 -0.49 16 4 H 0.09 0.97 7.95 -51.92 -0.41 0.56 16 5 C -0.15 -0.98 9.10 37.16 0.34 -0.64 16 6 C -0.12 -1.18 3.67 -27.88 -0.10 -1.28 16 7 C 0.50 6.77 7.34 -10.99 -0.08 6.69 16 8 O -0.52 -8.84 14.09 5.55 0.08 -8.76 16 9 N -0.60 -7.94 2.30 -172.79 -0.40 -8.34 16 10 C 0.10 1.13 5.10 -4.18 -0.02 1.10 16 11 C -0.13 -1.50 5.59 -28.71 -0.16 -1.67 16 12 C -0.14 -2.17 5.01 -29.63 -0.15 -2.32 16 13 C -0.08 -1.36 4.89 -27.97 -0.14 -1.50 16 14 C -0.08 -1.41 0.57 -154.15 -0.09 -1.50 16 15 C -0.13 -2.50 5.91 -25.64 -0.15 -2.65 16 16 C 0.15 3.56 6.01 -2.88 -0.02 3.54 16 17 N -0.60 -14.63 3.36 -169.47 -0.57 -15.20 16 18 C -0.22 -5.82 10.37 -15.06 -0.16 -5.98 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.72 10.21 55.49 0.57 -26.15 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.12 2.35 4.51 -2.40 -0.01 2.34 16 27 C 0.13 1.98 4.80 -3.06 -0.01 1.96 16 28 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 29 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.07 0.48 7.14 -51.93 -0.37 0.11 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.36 6.92 -51.93 -0.36 0.00 16 34 H 0.10 0.73 7.31 -51.93 -0.38 0.35 16 35 H 0.10 0.92 7.12 -51.93 -0.37 0.55 16 36 H 0.07 0.59 6.27 -51.93 -0.33 0.26 16 37 H 0.09 1.03 5.78 -51.93 -0.30 0.73 16 38 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.64 4.44 -51.93 -0.23 1.41 16 42 H 0.07 1.30 7.69 -51.93 -0.40 0.90 16 43 H 0.05 0.84 7.59 -51.93 -0.39 0.44 16 44 H 0.06 1.11 7.71 -51.93 -0.40 0.71 16 45 H 0.05 0.93 7.78 -51.93 -0.40 0.53 16 46 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.10 2.82 5.87 -51.93 -0.30 2.51 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.02 0.32 7.65 -51.93 -0.40 -0.07 16 50 H 0.07 1.27 3.46 -51.93 -0.18 1.09 16 51 H 0.09 1.45 6.88 -51.93 -0.36 1.09 16 52 H 0.06 0.92 7.63 -51.93 -0.40 0.52 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -31.34 387.96 -10.39 -41.74 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.87 Total: 1.80 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 0.15 Total: -2.79 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.40 Total: -49.69 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.18 Total: -4.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.34 -10.39 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569622176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.462 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds