Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81400 * 103.00150 * 2 1 4 4 H 1.09005 * 109.47447 * 54.99773 * 3 2 1 5 5 C 1.53002 * 109.47064 * 295.00036 * 3 2 1 6 6 C 1.53002 * 109.47551 * 175.00131 * 3 2 1 7 7 C 1.50697 * 109.47004 * 295.00070 * 6 3 2 8 8 O 1.21292 * 119.99739 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00177 * 180.02562 * 7 6 3 10 10 C 1.44574 * 118.77292 * 359.97438 * 9 7 6 11 11 C 1.54699 * 109.59284 * 270.64244 * 10 9 7 12 12 C 1.47011 * 110.65294 * 288.16101 * 11 10 9 13 13 C 1.52955 * 114.32972 * 62.93792 * 12 11 10 14 14 C 1.50568 * 109.10838 * 276.13298 * 13 12 11 15 15 C 1.53950 * 111.48509 * 214.27631 * 14 13 12 16 16 C 1.54147 * 104.90917 * 98.48462 * 15 14 13 17 17 N 1.47537 * 107.05323 * 358.24208 * 16 15 14 18 18 C 1.36940 * 126.98487 * 205.27060 * 17 16 15 19 19 H 1.08002 * 119.99580 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00245 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00310 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 90.00038 * 22 20 18 24 24 H 1.48494 * 109.47299 * 210.00179 * 22 20 18 25 25 H 1.48500 * 109.46787 * 330.00364 * 22 20 18 26 26 C 1.48229 * 106.02311 * 25.30766 * 17 16 15 27 27 C 1.47592 * 118.77408 * 179.97438 * 9 7 6 28 28 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47227 * 300.00059 * 1 2 3 30 30 H 1.08996 * 109.47498 * 59.99922 * 1 2 3 31 31 H 1.09000 * 109.47108 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47309 * 299.99664 * 5 3 2 33 33 H 1.09006 * 109.47049 * 59.99762 * 5 3 2 34 34 H 1.08998 * 109.46941 * 174.99896 * 6 3 2 35 35 H 1.08995 * 109.46862 * 54.99908 * 6 3 2 36 36 H 1.08993 * 109.45037 * 30.67974 * 10 9 7 37 37 H 1.08994 * 109.45084 * 150.63371 * 10 9 7 38 38 H 1.08998 * 109.23824 * 48.46177 * 11 10 9 39 39 H 1.08998 * 109.23643 * 167.86020 * 11 10 9 40 40 H 1.09000 * 108.51344 * 184.18199 * 12 11 10 41 41 H 1.09004 * 108.50832 * 301.66994 * 12 11 10 42 42 H 1.08997 * 109.52156 * 156.25427 * 13 12 11 43 43 H 1.09003 * 109.53851 * 36.02545 * 13 12 11 44 44 H 1.08998 * 110.35659 * 339.62794 * 15 14 13 45 45 H 1.08997 * 110.35511 * 217.34343 * 15 14 13 46 46 H 1.09004 * 109.91459 * 117.59077 * 16 15 14 47 47 H 1.09004 * 109.91855 * 238.88833 * 16 15 14 48 48 H 0.96995 * 120.00474 * 179.97438 * 21 20 18 49 49 H 1.08999 * 110.66459 * 79.84811 * 26 17 16 50 50 H 1.09003 * 110.66276 * 202.80863 * 26 17 16 51 51 H 1.08998 * 108.99215 * 17.42732 * 27 9 7 52 52 H 1.08999 * 108.92559 * 258.63679 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4271 1.4672 8 8 3.3839 0.9673 2.2462 9 7 5.4964 1.4790 1.8016 10 6 6.4365 2.0327 0.8531 11 6 6.9617 0.9100 -0.0725 12 6 7.8722 0.0178 0.6597 13 6 7.2194 -0.7337 1.8210 14 6 7.2118 0.1516 3.0388 15 6 7.3968 -0.6650 4.3307 16 6 8.8934 -0.5300 4.6744 17 7 9.5112 0.2794 3.6066 18 6 10.8243 0.2667 3.2184 19 1 11.1570 0.9108 2.4179 20 6 11.7278 -0.5741 3.8537 21 7 11.3224 -1.3595 4.8289 22 14 13.5190 -0.5919 3.3237 23 1 14.2785 0.4114 4.1122 24 1 14.0912 -1.9420 3.5582 25 1 13.6111 -0.2593 1.8794 26 6 8.4217 1.1096 3.0402 27 6 5.9120 0.9684 3.1226 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.9876 3.4637 -1.3072 32 1 2.2354 1.9150 -2.1492 33 1 0.6634 2.2778 -1.3969 34 1 3.9901 2.9977 0.0365 35 1 4.2338 1.3805 -0.6659 36 1 5.9401 2.7953 0.2531 37 1 7.2726 2.4806 1.3901 38 1 6.1183 0.3316 -0.4497 39 1 7.4944 1.3565 -0.9121 40 1 8.2783 -0.7125 -0.0402 41 1 8.6976 0.6119 1.0520 42 1 7.7865 -1.6401 2.0330 43 1 6.1955 -0.9968 1.5553 44 1 7.1402 -1.7103 4.1586 45 1 6.7850 -0.2507 5.1320 46 1 9.0100 -0.0285 5.6351 47 1 9.3570 -1.5159 4.7084 48 1 11.9536 -1.9473 5.2726 49 1 8.2271 1.9741 3.6750 50 1 8.6665 1.4258 2.0262 51 1 5.1204 0.3352 3.5232 52 1 6.0657 1.8121 3.7954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569622176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = -12.120959 kcal Electronic energy + Delta-G solvation = -29631.239006 eV Core-core repulsion = 25950.504014 eV Total energy + Delta-G solvation = -3680.734992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84332 -39.98416 -37.35743 -35.58671 -34.91057 -34.44897 -32.40426 -30.57159 -30.02031 -28.91510 -28.22278 -27.02182 -26.17381 -24.59494 -23.30760 -22.45924 -21.49598 -19.87537 -19.42688 -18.80997 -17.92056 -17.72346 -17.47944 -16.74392 -16.59833 -16.19971 -15.83689 -15.43250 -15.07646 -15.02468 -14.74443 -14.61013 -14.51396 -14.30434 -13.97209 -13.75713 -13.67369 -13.42550 -13.32434 -13.21933 -12.97268 -12.85776 -12.80098 -12.70848 -12.50622 -12.33277 -12.16190 -12.03581 -11.99572 -11.92062 -11.69371 -11.44726 -11.25632 -11.14338 -10.73765 -10.70857 -10.65799 -10.50595 -9.50541 -8.86190 -8.42754 -7.72965 -5.15204 0.85892 1.48049 1.49621 1.57895 1.74224 1.78219 2.12039 2.52521 3.38134 3.48084 3.63030 3.69200 3.77866 3.92496 3.94841 4.08385 4.13599 4.23055 4.25055 4.32814 4.33577 4.36683 4.44268 4.53008 4.58262 4.62368 4.67267 4.69712 4.76545 4.80712 4.86239 4.88076 4.90082 4.96314 4.96444 5.03157 5.05800 5.22155 5.24491 5.30139 5.30808 5.41368 5.44413 5.55032 5.63521 5.72913 5.73365 5.84759 6.33294 6.56089 7.12039 7.32358 7.80605 8.51928 9.30942 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.002769 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.680911 B =10109.845284 C =10510.314140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.314 6.314 3 C -0.031 4.031 4 H 0.079 0.921 5 C -0.141 4.141 6 C -0.118 4.118 7 C 0.499 3.501 8 O -0.565 6.565 9 N -0.598 5.598 10 C 0.098 3.902 11 C -0.125 4.125 12 C -0.135 4.135 13 C -0.075 4.075 14 C -0.068 4.068 15 C -0.122 4.122 16 C 0.153 3.847 17 N -0.615 5.615 18 C -0.220 4.220 19 H 0.088 0.912 20 C -0.074 4.074 21 N -0.954 5.954 22 Si 0.975 3.025 23 H -0.290 1.290 24 H -0.300 1.300 25 H -0.265 1.265 26 C 0.123 3.877 27 C 0.138 3.862 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.067 0.933 46 H -0.020 1.020 47 H 0.067 0.933 48 H 0.243 0.757 49 H 0.019 0.981 50 H 0.091 0.909 51 H 0.070 0.930 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.725 10.314 -15.657 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.089 6.089 3 C -0.160 4.160 4 H 0.097 0.903 5 C -0.199 4.199 6 C -0.158 4.158 7 C 0.288 3.712 8 O -0.444 6.444 9 N -0.330 5.330 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.172 4.172 13 C -0.112 4.112 14 C -0.070 4.070 15 C -0.161 4.161 16 C 0.027 3.973 17 N -0.340 5.340 18 C -0.349 4.349 19 H 0.106 0.894 20 C -0.266 4.266 21 N -0.604 5.604 22 Si 0.805 3.195 23 H -0.217 1.217 24 H -0.227 1.227 25 H -0.189 1.189 26 C -0.001 4.001 27 C 0.015 3.985 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.086 0.914 46 H -0.002 1.002 47 H 0.085 0.915 48 H 0.053 0.947 49 H 0.036 0.964 50 H 0.108 0.892 51 H 0.089 0.911 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.234 9.120 -15.207 26.161 hybrid contribution 0.496 0.193 0.857 1.008 sum -18.739 9.313 -14.351 25.373 Atomic orbital electron populations 1.23355 0.92179 1.06801 1.05353 1.87281 1.09927 1.13807 1.97866 1.22907 0.98021 0.92639 1.02393 0.90279 1.22070 1.01702 1.01768 0.94400 1.21701 0.94199 1.05444 0.94489 1.21210 0.81873 0.78338 0.89760 1.90718 1.53516 1.46657 1.53461 1.47724 1.07239 1.61055 1.16989 1.21945 0.93513 0.95925 0.91095 1.21191 0.99422 0.97148 0.98554 1.20754 1.00206 0.99473 0.96781 1.20710 0.99116 0.97139 0.94267 1.21259 0.94413 0.95980 0.95329 1.22582 0.97204 0.99329 0.96992 1.21425 0.89834 0.97251 0.88763 1.45031 1.04687 1.44968 1.39265 1.19443 0.83762 1.17926 1.13753 0.89394 1.25602 1.02183 0.99709 0.99063 1.70045 1.33688 1.29214 1.27495 0.85105 0.80061 0.76131 0.78248 1.21734 1.22693 1.18926 1.22592 0.87079 0.92157 0.98287 1.21669 0.95257 0.97374 0.84185 0.87973 0.90775 0.88899 0.89471 0.90820 0.91948 0.84172 0.86853 0.86694 0.90141 0.92064 0.88344 0.93346 0.90594 0.94791 0.92966 0.92370 0.91400 1.00217 0.91477 0.94710 0.96368 0.89152 0.91118 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.45 113.37 1.18 -0.48 16 2 S -0.31 -7.06 20.24 -56.49 -1.14 -8.21 16 3 C -0.03 -0.50 2.44 30.60 0.07 -0.42 16 4 H 0.08 1.50 7.95 -2.39 -0.02 1.48 16 5 C -0.14 -1.32 9.10 71.98 0.66 -0.67 16 6 C -0.12 -1.78 3.67 29.85 0.11 -1.68 16 7 C 0.50 12.26 7.34 87.66 0.64 12.90 16 8 O -0.56 -18.61 14.09 -3.07 -0.04 -18.65 16 9 N -0.60 -14.39 2.30 -818.98 -1.88 -16.27 16 10 C 0.10 1.76 5.10 87.32 0.45 2.21 16 11 C -0.12 -2.42 5.59 29.31 0.16 -2.25 16 12 C -0.14 -3.86 5.01 28.72 0.14 -3.72 16 13 C -0.07 -2.53 4.89 29.79 0.15 -2.39 16 14 C -0.07 -2.34 0.57 -51.95 -0.03 -2.37 16 15 C -0.12 -4.86 5.91 31.30 0.19 -4.68 16 16 C 0.15 7.77 6.01 86.57 0.52 8.29 16 17 N -0.62 -30.79 3.36 -690.09 -2.32 -33.10 16 18 C -0.22 -11.91 10.37 84.03 0.87 -11.04 16 19 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 21 N -0.95 -57.83 10.21 21.65 0.22 -57.61 16 22 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 C 0.12 4.71 4.51 86.50 0.39 5.10 16 27 C 0.14 4.15 4.80 86.42 0.42 4.57 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.02 7.14 -2.39 -0.02 1.00 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.56 6.92 -2.38 -0.02 0.54 16 34 H 0.14 1.13 7.31 -2.39 -0.02 1.11 16 35 H 0.11 1.53 7.12 -2.39 -0.02 1.51 16 36 H 0.12 1.16 6.27 -2.39 -0.01 1.14 16 37 H 0.08 1.60 5.78 -2.39 -0.01 1.59 16 38 H 0.06 1.19 7.30 -2.39 -0.02 1.18 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 2.48 4.44 -2.39 -0.01 2.47 16 42 H 0.03 1.35 7.69 -2.39 -0.02 1.34 16 43 H 0.05 1.74 7.59 -2.39 -0.02 1.72 16 44 H 0.06 2.30 7.71 -2.39 -0.02 2.29 16 45 H 0.07 2.47 7.78 -2.39 -0.02 2.45 16 46 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 47 H 0.07 3.91 5.87 -2.39 -0.01 3.90 16 48 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.02 0.71 7.65 -2.39 -0.02 0.69 16 50 H 0.09 3.14 3.46 -2.39 -0.01 3.13 16 51 H 0.07 2.38 6.88 -2.39 -0.02 2.36 16 52 H 0.06 1.86 7.63 -2.39 -0.02 1.84 16 Total: -1.00 -72.66 387.96 4.15 -68.51 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.90 Total: 18.11 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 6.38 Total: -0.32 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -3.97 Total: -106.98 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.04 Total: -18.65 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: -7.06 SS G_CDS: -1.14 Total: -8.21 kcal Total: -72.66 4.15 -68.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569622176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.392 kcal (2) G-P(sol) polarization free energy of solvation -72.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds