Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81403 * 103.00021 * 2 1 4 4 H 1.08997 * 109.46884 * 304.99968 * 3 2 1 5 5 C 1.52998 * 109.47112 * 64.99762 * 3 2 1 6 6 C 1.52992 * 109.46932 * 184.99989 * 3 2 1 7 7 C 1.50702 * 109.47277 * 64.99953 * 6 3 2 8 8 O 1.21277 * 119.99906 * 0.02562 * 7 6 3 9 9 N 1.34781 * 120.00126 * 179.97438 * 7 6 3 10 10 C 1.47460 * 118.68823 * 0.02562 * 9 7 6 11 11 C 1.53998 * 112.21397 * 138.01524 * 10 9 7 12 12 C 1.50809 * 110.43386 * 319.21133 * 11 10 9 13 13 C 1.52857 * 109.44591 * 91.62913 * 12 11 10 14 14 C 1.46790 * 113.94068 * 275.89795 * 13 12 11 15 15 C 1.54686 * 112.90030 * 185.35551 * 14 13 12 16 16 C 1.54404 * 102.90441 * 86.48709 * 15 14 13 17 17 N 1.47056 * 107.29088 * 21.78328 * 16 15 14 18 18 C 1.36938 * 125.64146 * 180.81569 * 17 16 15 19 19 H 1.08000 * 119.99665 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99933 * 0.02562 * 18 17 16 21 21 N 1.31615 * 119.99840 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47200 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47335 * 119.99947 * 22 20 18 25 25 H 1.48499 * 109.47310 * 239.99767 * 22 20 18 26 26 C 1.47505 * 108.71876 * 1.07911 * 17 16 15 27 27 C 1.44721 * 118.68874 * 180.02562 * 9 7 6 28 28 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47165 * 300.00189 * 1 2 3 30 30 H 1.08998 * 109.47141 * 59.99968 * 1 2 3 31 31 H 1.09005 * 109.46967 * 60.00602 * 5 3 2 32 32 H 1.09001 * 109.46908 * 179.97438 * 5 3 2 33 33 H 1.08992 * 109.47358 * 299.99985 * 5 3 2 34 34 H 1.08995 * 109.47626 * 304.99586 * 6 3 2 35 35 H 1.09009 * 109.47064 * 184.99577 * 6 3 2 36 36 H 1.08999 * 108.93148 * 17.30523 * 10 9 7 37 37 H 1.09006 * 108.93011 * 258.71910 * 10 9 7 38 38 H 1.09011 * 109.30818 * 198.92381 * 11 10 9 39 39 H 1.08999 * 109.31418 * 79.51221 * 11 10 9 40 40 H 1.08997 * 109.47216 * 331.64111 * 12 11 10 41 41 H 1.08995 * 109.47942 * 211.62729 * 12 11 10 42 42 H 1.08997 * 108.59286 * 154.73790 * 13 12 11 43 43 H 1.09000 * 108.58744 * 37.04394 * 13 12 11 44 44 H 1.09008 * 110.72781 * 328.13909 * 15 14 13 45 45 H 1.09001 * 110.73237 * 204.84407 * 15 14 13 46 46 H 1.08999 * 109.88251 * 262.36167 * 16 15 14 47 47 H 1.08999 * 109.88217 * 141.20877 * 16 15 14 48 48 H 0.97009 * 119.99716 * 180.02562 * 21 20 18 49 49 H 1.09002 * 110.37639 * 95.08871 * 26 17 16 50 50 H 1.08994 * 110.37854 * 217.43521 * 26 17 16 51 51 H 1.08998 * 109.52725 * 150.55594 * 27 9 7 52 52 H 1.09001 * 109.53118 * 30.34945 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7369 1.9411 -0.1257 7 6 4.1919 1.4269 -1.4672 8 8 3.3840 0.9673 -2.2462 9 7 5.4965 1.4787 -1.8017 10 6 6.4538 2.0438 -0.8328 11 6 7.7555 1.2246 -0.7549 12 6 7.4517 -0.2519 -0.7982 13 6 7.4888 -0.7368 -2.2474 14 6 6.2332 -0.5268 -2.9781 15 6 6.2521 -1.1430 -4.3968 16 6 5.8051 -2.5995 -4.1461 17 7 5.0786 -2.6199 -2.8677 18 6 4.5318 -3.7284 -2.2782 19 1 4.0151 -3.6384 -1.3341 20 6 4.6415 -4.9675 -2.8942 21 7 5.2716 -5.0770 -4.0445 22 14 3.8948 -6.4794 -2.0904 23 1 3.2456 -6.0910 -0.8126 24 1 2.8818 -7.0738 -2.9991 25 1 4.9630 -7.4752 -1.8209 26 6 5.0310 -1.2478 -2.3284 27 6 5.9020 0.9776 -3.0974 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2355 1.9150 2.1492 32 1 1.9884 3.4636 1.3075 33 1 0.6636 2.2779 1.3969 34 1 4.2339 1.3805 0.6659 35 1 3.9902 2.9976 -0.0367 36 1 5.9890 2.0640 0.1529 37 1 6.6955 3.0647 -1.1288 38 1 8.2737 1.4588 0.1751 39 1 8.3966 1.4856 -1.5969 40 1 6.4612 -0.4315 -0.3802 41 1 8.1961 -0.7934 -0.2146 42 1 7.7194 -1.8021 -2.2516 43 1 8.2871 -0.2097 -2.7698 44 1 7.2579 -1.1150 -4.8162 45 1 5.5462 -0.6298 -5.0499 46 1 6.6776 -3.2501 -4.0870 47 1 5.1482 -2.9294 -4.9510 48 1 5.3480 -5.9429 -4.4751 49 1 4.0980 -0.7607 -2.6119 50 1 5.1381 -1.2624 -1.2438 51 1 6.7847 1.5190 -3.4375 52 1 5.0906 1.1161 -3.8119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569622178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -4.030639 kcal Electronic energy + Delta-G solvation = -30440.254353 eV Core-core repulsion = 26759.870183 eV Total energy + Delta-G solvation = -3680.384169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63738 -38.20615 -36.10369 -34.65174 -33.39183 -32.78699 -30.47248 -29.27946 -28.67425 -28.12511 -26.36575 -25.47459 -24.71703 -23.19270 -22.03046 -20.94748 -19.87262 -18.86783 -17.97889 -17.07692 -16.87785 -16.51890 -15.86584 -15.43146 -14.78947 -14.69029 -14.40630 -14.24793 -14.04779 -13.63251 -13.53990 -13.37050 -13.29648 -12.86167 -12.80012 -12.62252 -12.42269 -12.34524 -11.94788 -11.72186 -11.66129 -11.44542 -11.36893 -11.17494 -11.15325 -10.84643 -10.72172 -10.68094 -10.56978 -10.15790 -9.92655 -9.87922 -9.75156 -9.56492 -9.51821 -9.39690 -9.19939 -8.39640 -8.19070 -7.23052 -6.50753 -5.49382 -2.78379 1.85750 2.75688 2.90788 3.21176 3.51913 3.57524 3.60220 4.44949 4.53527 4.68991 4.69722 4.94848 5.00393 5.07722 5.17794 5.19201 5.21685 5.26698 5.28831 5.31321 5.39813 5.40396 5.53392 5.63850 5.66884 5.69836 5.72830 5.76521 5.83876 5.88062 5.94298 6.04378 6.08125 6.14046 6.25170 6.31616 6.38792 6.52438 6.60811 6.71792 6.80126 6.94244 7.00061 7.13916 7.49694 7.58663 7.79929 7.85388 8.03739 8.49145 8.53156 9.46596 10.08197 10.76390 11.63143 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.005321 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.776271 B = 5260.833429 C = 7349.341522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.213 6.213 3 C -0.052 4.052 4 H 0.091 0.909 5 C -0.146 4.146 6 C -0.122 4.122 7 C 0.500 3.500 8 O -0.497 6.497 9 N -0.605 5.605 10 C 0.109 3.891 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.091 4.091 14 C -0.087 4.087 15 C -0.133 4.133 16 C 0.182 3.818 17 N -0.604 5.604 18 C -0.206 4.206 19 H 0.074 0.926 20 C -0.015 4.015 21 N -0.927 5.927 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.140 3.860 27 C 0.131 3.869 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.247 0.753 49 H 0.060 0.940 50 H 0.026 0.974 51 H 0.065 0.935 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 20.555 9.446 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.013 5.987 3 C -0.181 4.181 4 H 0.109 0.891 5 C -0.206 4.206 6 C -0.163 4.163 7 C 0.286 3.714 8 O -0.371 6.371 9 N -0.339 5.339 10 C -0.014 4.014 11 C -0.168 4.168 12 C -0.154 4.154 13 C -0.129 4.129 14 C -0.089 4.089 15 C -0.172 4.172 16 C 0.057 3.943 17 N -0.330 5.330 18 C -0.335 4.335 19 H 0.092 0.908 20 C -0.210 4.210 21 N -0.576 5.576 22 Si 0.736 3.264 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.015 3.985 27 C 0.008 3.992 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.044 0.956 51 H 0.083 0.917 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.740 19.218 8.971 21.222 hybrid contribution -1.047 0.064 0.382 1.117 sum -0.307 19.282 9.353 21.433 Atomic orbital electron populations 1.23382 0.95920 1.06291 1.04074 1.87531 1.05541 1.08062 1.97588 1.22883 0.97767 0.96506 1.00993 0.89066 1.22106 1.01500 1.00541 0.96414 1.21546 0.94641 1.02918 0.97148 1.20392 0.82484 0.79462 0.89012 1.90737 1.52343 1.42656 1.51402 1.47645 1.06616 1.62432 1.17192 1.21925 0.90639 0.96222 0.92572 1.21766 0.96364 0.96430 1.02197 1.21101 1.02395 0.94154 0.97708 1.20158 0.96328 1.02216 0.94170 1.21038 0.97101 0.93664 0.97077 1.22883 0.99881 0.99928 0.94520 1.21065 0.95719 0.88961 0.88514 1.44489 1.64626 1.02346 1.21577 1.19098 1.26965 0.84981 1.02499 0.90774 1.24715 1.01540 0.97335 0.97440 1.69980 1.47845 1.22577 1.17234 0.86125 0.78337 0.83592 0.78357 1.20658 1.22037 1.22094 1.22083 0.95189 0.86016 0.95229 1.21593 0.99841 0.93813 0.83955 0.88269 0.91233 0.90748 0.91320 0.91964 0.92354 0.88330 0.88230 0.90501 0.92253 0.91174 0.91646 0.91123 0.92302 0.91371 0.93402 0.92606 0.92412 0.94109 0.94437 0.94238 0.92240 0.95621 0.91688 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 10.45 101.05 1.06 -0.47 16 2 S -0.21 -3.28 20.24 -107.50 -2.18 -5.45 16 3 C -0.05 -0.60 2.44 -26.74 -0.07 -0.66 16 4 H 0.09 1.12 7.95 -51.93 -0.41 0.71 16 5 C -0.15 -1.21 9.10 37.16 0.34 -0.88 16 6 C -0.12 -1.30 3.50 -27.89 -0.10 -1.40 16 7 C 0.50 7.27 6.27 -10.98 -0.07 7.20 16 8 O -0.50 -9.31 11.47 5.56 0.06 -9.25 16 9 N -0.61 -7.93 2.07 -172.74 -0.36 -8.29 16 10 C 0.11 1.03 5.95 -3.00 -0.02 1.01 16 11 C -0.13 -1.28 5.68 -27.31 -0.16 -1.43 16 12 C -0.12 -1.60 5.43 -27.90 -0.15 -1.75 16 13 C -0.09 -1.50 4.15 -29.77 -0.12 -1.62 16 14 C -0.09 -1.57 0.49 -155.01 -0.08 -1.64 16 15 C -0.13 -2.65 5.91 -25.11 -0.15 -2.80 16 16 C 0.18 4.73 5.14 -3.00 -0.02 4.71 16 17 N -0.60 -16.51 3.40 -170.19 -0.58 -17.09 16 18 C -0.21 -6.17 10.28 -15.06 -0.15 -6.33 16 19 H 0.07 2.21 7.83 -52.49 -0.41 1.80 16 20 C -0.02 -0.46 5.49 -17.43 -0.10 -0.56 16 21 N -0.93 -28.76 10.31 55.49 0.57 -28.18 16 22 Si 0.90 23.58 29.55 -169.99 -5.02 18.55 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 26 C 0.14 3.17 4.70 -2.70 -0.01 3.16 16 27 C 0.13 1.96 4.45 -4.20 -0.02 1.94 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.66 7.14 -51.92 -0.37 0.29 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 34 H 0.10 1.02 7.41 -51.93 -0.38 0.64 16 35 H 0.10 0.75 8.03 -51.92 -0.42 0.33 16 36 H 0.08 0.61 5.82 -51.93 -0.30 0.30 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 39 H 0.06 0.63 7.34 -51.93 -0.38 0.25 16 40 H 0.07 1.13 5.54 -51.93 -0.29 0.84 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 43 H 0.05 0.69 7.41 -51.93 -0.38 0.30 16 44 H 0.06 0.99 8.03 -51.92 -0.42 0.58 16 45 H 0.06 1.12 7.64 -51.93 -0.40 0.72 16 46 H 0.04 1.15 7.39 -51.93 -0.38 0.77 16 47 H 0.04 1.09 7.49 -51.93 -0.39 0.70 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.06 1.47 4.87 -51.93 -0.25 1.22 16 50 H 0.03 0.60 6.09 -51.93 -0.32 0.28 16 51 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 52 H 0.08 1.37 6.89 -51.93 -0.36 1.01 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -34.87 388.92 -10.60 -45.47 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -9.15 Total: -0.10 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 0.19 Total: -1.53 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.36 Total: -53.56 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.55 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.18 Total: -5.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.87 -10.60 -45.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569622178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.441 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds