Wall clock time and date at job start Sat Apr 11 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81395 * 103.00456 * 2 1 4 4 C 1.52992 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47546 * 55.00218 * 4 3 2 6 6 C 1.52997 * 109.47393 * 295.00220 * 4 3 2 7 7 C 1.50703 * 109.47255 * 175.00105 * 4 3 2 8 8 O 1.21274 * 119.99996 * 7.07238 * 7 4 3 9 9 N 1.34780 * 119.99948 * 187.07562 * 7 4 3 10 10 C 1.46922 * 120.64524 * 3.18524 * 9 7 4 11 11 C 1.53618 * 108.54223 * 126.32446 * 10 9 7 12 12 C 1.53058 * 109.25838 * 54.86537 * 11 10 9 13 13 C 1.53026 * 109.43670 * 58.57387 * 12 11 10 14 14 C 1.53188 * 109.33431 * 181.23133 * 13 12 11 15 15 N 1.46942 * 108.77995 * 305.37481 * 14 13 12 16 16 C 1.36929 * 120.64335 * 233.61523 * 15 14 13 17 17 H 1.08003 * 120.00235 * 30.82840 * 16 15 14 18 18 C 1.38815 * 120.00081 * 210.83677 * 16 15 14 19 19 N 1.31614 * 120.00001 * 11.45579 * 18 16 15 20 20 Si 1.86802 * 119.99879 * 191.46138 * 18 16 15 21 21 H 1.48500 * 109.46945 * 89.99786 * 20 18 16 22 22 H 1.48500 * 109.46705 * 209.99653 * 20 18 16 23 23 H 1.48496 * 109.47252 * 329.99355 * 20 18 16 24 24 C 1.46928 * 118.71108 * 53.63825 * 15 14 13 25 25 C 1.53048 * 109.38882 * 178.59953 * 12 11 10 26 26 C 1.53027 * 109.54569 * 298.56327 * 12 11 10 27 27 C 1.46929 * 120.64009 * 183.46466 * 9 7 4 28 28 H 1.08998 * 109.46485 * 59.99841 * 1 2 3 29 29 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46943 * 300.00447 * 1 2 3 31 31 H 1.08996 * 109.46893 * 299.99980 * 3 2 1 32 32 H 1.09008 * 109.46955 * 59.99625 * 3 2 1 33 33 H 1.09006 * 109.47186 * 185.02076 * 6 4 3 34 34 H 1.08998 * 109.47350 * 305.01945 * 6 4 3 35 35 H 1.09005 * 109.47351 * 65.02054 * 6 4 3 36 36 H 1.09004 * 109.58664 * 246.15709 * 10 9 7 37 37 H 1.09005 * 109.58993 * 6.58388 * 10 9 7 38 38 H 1.08989 * 109.63115 * 294.87172 * 11 10 9 39 39 H 1.08999 * 109.43127 * 174.73907 * 11 10 9 40 40 H 1.08996 * 109.49872 * 301.18705 * 13 12 11 41 41 H 1.09008 * 109.49338 * 61.27233 * 13 12 11 42 42 H 1.08998 * 109.58942 * 185.58623 * 14 13 12 43 43 H 1.08994 * 109.70227 * 65.23110 * 14 13 12 44 44 H 0.96995 * 120.00065 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.57928 * 186.57168 * 24 15 14 46 46 H 1.08990 * 109.70565 * 66.21737 * 24 15 14 47 47 H 1.08994 * 109.49606 * 298.69251 * 25 12 11 48 48 H 1.09000 * 109.49002 * 58.77691 * 25 12 11 49 49 H 1.08997 * 109.49374 * 301.34155 * 26 12 11 50 50 H 1.08999 * 109.49513 * 181.25773 * 26 12 11 51 51 H 1.09000 * 109.58550 * 353.40275 * 27 9 7 52 52 H 1.09002 * 109.58643 * 113.68555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1702 1.3950 -0.8409 6 6 4.3173 1.3916 1.3082 7 6 4.0822 3.4027 -0.1232 8 8 3.2022 4.2358 -0.0749 9 7 5.3641 3.7853 -0.2876 10 6 6.4330 2.7858 -0.4178 11 6 7.2228 3.0797 -1.7022 12 6 7.7176 4.5277 -1.6704 13 6 8.5945 4.7392 -0.4342 14 6 9.0633 6.1968 -0.3882 15 7 9.7245 6.5214 -1.6596 16 6 10.9890 7.0467 -1.6745 17 1 11.6905 6.7877 -0.8953 18 6 11.3691 7.9122 -2.6910 19 7 10.4631 8.4058 -3.5082 20 14 13.1666 8.3762 -2.8992 21 1 13.8246 7.4093 -3.8143 22 1 13.2618 9.7431 -3.4717 23 1 13.8422 8.3451 -1.5772 24 6 9.0024 6.2719 -2.9147 25 6 8.5346 4.8134 -2.9327 26 6 6.5189 5.4773 -1.6136 27 6 5.7203 5.2100 -0.3340 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8033 2.2370 -0.8900 32 1 1.8032 2.2371 0.8900 33 1 5.3876 1.5944 1.3478 34 1 3.8246 1.8741 2.1523 35 1 4.1494 0.3156 1.3562 36 1 7.0969 2.8463 0.4446 37 1 5.9961 1.7888 -0.4759 38 1 6.5788 2.9344 -2.5694 39 1 8.0764 2.4049 -1.7654 40 1 8.0184 4.5139 0.4633 41 1 9.4610 4.0798 -0.4858 42 1 9.7670 6.3286 0.4337 43 1 8.2059 6.8542 -0.2440 44 1 10.7287 9.0109 -4.2183 45 1 9.6660 6.4533 -3.7602 46 1 8.1387 6.9336 -2.9795 47 1 9.4016 4.1535 -2.9619 48 1 7.9157 4.6407 -3.8132 49 1 5.8814 5.3105 -2.4818 50 1 6.8716 6.5087 -1.6135 51 1 4.8127 5.8136 -0.3369 52 1 6.3252 5.4639 0.5365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570486063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:24 Heat of formation + Delta-G solvation = -25.707910 kcal Electronic energy + Delta-G solvation = -29123.900645 eV Core-core repulsion = 25442.576479 eV Total energy + Delta-G solvation = -3681.324166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75019 -38.94966 -35.97257 -34.94030 -33.48384 -31.34834 -30.84630 -30.01147 -29.41641 -28.04873 -27.43878 -25.24728 -24.29964 -23.23759 -22.46716 -21.82983 -20.47921 -19.15164 -17.93276 -17.44680 -16.47211 -16.16331 -16.04462 -15.71046 -14.93858 -14.74442 -14.43699 -14.21691 -14.20544 -13.96017 -13.87351 -13.79768 -13.48561 -13.21801 -13.10739 -12.91363 -12.70740 -12.50578 -12.43032 -12.05907 -11.74984 -11.63042 -11.49821 -11.35278 -11.32994 -11.17509 -11.00577 -10.76258 -10.50889 -10.40584 -10.34404 -10.14534 -9.99971 -9.84967 -9.59795 -9.47285 -9.39078 -8.52630 -8.44751 -8.01312 -6.58686 -5.77026 -3.23932 1.28181 2.21855 2.53388 2.98888 3.37017 3.43799 3.44873 4.25414 4.38637 4.49215 4.51584 4.76240 4.77158 4.78570 4.94367 4.99805 5.06031 5.21345 5.26151 5.31466 5.33199 5.36193 5.38383 5.47264 5.48226 5.51204 5.63061 5.65141 5.79432 5.85703 5.88537 5.95133 6.03733 6.11090 6.11937 6.22163 6.37829 6.39895 6.56797 6.57336 6.68579 6.71379 6.86488 6.93206 7.01931 7.36668 7.42059 7.72644 7.80340 8.08709 8.49128 9.24221 9.86258 10.44334 11.30659 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.002240 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.541086 B =12499.372944 C =12586.857123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.263 6.263 3 C -0.063 4.063 4 C -0.094 4.094 5 H 0.104 0.896 6 C -0.149 4.149 7 C 0.522 3.478 8 O -0.547 6.547 9 N -0.601 5.601 10 C 0.102 3.898 11 C -0.125 4.125 12 C -0.046 4.046 13 C -0.125 4.125 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.250 4.250 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.905 5.905 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.171 3.829 25 C -0.130 4.130 26 C -0.123 4.123 27 C 0.111 3.889 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.019 0.981 47 H 0.054 0.946 48 H 0.045 0.955 49 H 0.058 0.942 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.420 -16.937 7.101 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.037 6.037 3 C -0.212 4.212 4 C -0.117 4.117 5 H 0.122 0.878 6 C -0.206 4.206 7 C 0.309 3.691 8 O -0.425 6.425 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.164 4.164 12 C -0.046 4.046 13 C -0.164 4.164 14 C 0.018 3.982 15 N -0.314 5.314 16 C -0.380 4.380 17 H 0.081 0.919 18 C -0.196 4.196 19 N -0.549 5.549 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.169 4.169 26 C -0.161 4.161 27 C -0.011 4.011 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.108 0.892 51 H 0.105 0.895 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.187 -17.226 7.000 24.008 hybrid contribution 0.137 1.278 -0.310 1.322 sum -15.050 -15.948 6.690 22.926 Atomic orbital electron populations 1.23380 0.94065 1.06434 1.05101 1.86723 1.07562 1.11297 1.98103 1.23214 0.97927 0.93641 1.06401 1.21017 0.94677 0.94169 1.01792 0.87808 1.21939 1.01455 1.02203 0.95040 1.20375 0.82270 0.90407 0.76094 1.90680 1.46729 1.54021 1.51104 1.48094 1.06270 1.07891 1.71137 1.22052 0.89427 0.91346 0.99197 1.22119 0.99458 0.98140 0.96641 1.20376 0.94452 0.92616 0.97164 1.22141 0.98285 1.00222 0.95739 1.20924 0.95409 0.91841 0.90002 1.43987 1.14823 1.73163 0.99384 1.19173 0.88012 1.20251 1.10561 0.91935 1.25139 0.97601 0.96792 1.00064 1.69973 1.31477 1.33439 1.20048 0.86276 0.85001 0.77487 0.77891 1.21502 1.21752 1.20481 1.20789 0.95358 0.88670 0.90625 1.22238 0.98099 1.01873 0.94720 1.22021 0.96022 1.01666 0.96416 1.21731 1.00106 0.80271 0.98948 0.90434 0.88071 0.90417 0.89353 0.89241 0.91264 0.91821 0.90481 0.90722 0.89968 0.91909 0.90867 0.93132 0.92403 0.93232 0.96381 0.93666 0.89626 0.96260 0.92746 0.93592 0.92345 0.89158 0.89527 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.76 101.05 1.09 0.34 16 2 S -0.26 -2.26 21.28 -107.50 -2.29 -4.54 16 3 C -0.06 -0.60 4.68 37.15 0.17 -0.43 16 4 C -0.09 -0.89 1.87 -91.78 -0.17 -1.07 16 5 H 0.10 0.91 7.17 -51.93 -0.37 0.54 16 6 C -0.15 -1.19 8.54 37.16 0.32 -0.88 16 7 C 0.52 6.64 7.00 -10.98 -0.08 6.56 16 8 O -0.55 -8.82 15.41 5.56 0.09 -8.74 16 9 N -0.60 -7.34 2.97 -172.50 -0.51 -7.86 16 10 C 0.10 1.04 4.49 -3.49 -0.02 1.03 16 11 C -0.13 -1.50 4.92 -26.38 -0.13 -1.63 16 12 C -0.05 -0.69 0.51 -154.43 -0.08 -0.77 16 13 C -0.12 -1.97 4.14 -26.62 -0.11 -2.08 16 14 C 0.14 2.88 6.04 -3.70 -0.02 2.85 16 15 N -0.59 -14.25 2.99 -172.32 -0.51 -14.76 16 16 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16 17 H 0.06 1.66 7.85 -52.48 -0.41 1.25 16 18 C 0.00 0.07 5.03 -17.43 -0.09 -0.02 16 19 N -0.90 -25.95 11.05 55.49 0.61 -25.34 16 20 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.17 3.93 4.79 -3.71 -0.02 3.91 16 25 C -0.13 -2.35 4.90 -26.61 -0.13 -2.48 16 26 C -0.12 -1.89 4.15 -26.62 -0.11 -2.00 16 27 C 0.11 1.54 5.96 -3.71 -0.02 1.51 16 28 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.10 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 32 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.07 0.52 5.92 -51.93 -0.31 0.21 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.57 7.32 -51.93 -0.38 0.19 16 36 H 0.07 0.73 6.66 -51.93 -0.35 0.38 16 37 H 0.08 0.67 4.99 -51.93 -0.26 0.41 16 38 H 0.06 0.76 8.14 -51.94 -0.42 0.34 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.69 4.98 -51.93 -0.26 0.43 16 41 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 43 H 0.02 0.37 6.73 -51.93 -0.35 0.02 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.09 2.26 6.08 -51.93 -0.32 1.94 16 46 H 0.02 0.47 6.67 -51.93 -0.35 0.12 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.09 1.61 4.99 -51.93 -0.26 1.35 16 51 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 52 H 0.07 0.97 6.74 -51.93 -0.35 0.62 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -30.26 388.93 -10.26 -40.51 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.94 Total: 0.34 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 0.46 Total: -2.01 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.41 Total: -47.96 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.29 Total: -4.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.26 -10.26 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570486063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.805 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds