Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81395 * 103.00456 * 2 1 4 4 C 1.52992 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47546 * 55.00218 * 4 3 2 6 6 C 1.52997 * 109.47393 * 295.00220 * 4 3 2 7 7 C 1.50703 * 109.47255 * 175.00105 * 4 3 2 8 8 O 1.21274 * 119.99996 * 7.07238 * 7 4 3 9 9 N 1.34780 * 119.99948 * 187.07562 * 7 4 3 10 10 C 1.46922 * 120.64524 * 3.18524 * 9 7 4 11 11 C 1.53618 * 108.54223 * 126.32446 * 10 9 7 12 12 C 1.53058 * 109.25838 * 54.86537 * 11 10 9 13 13 C 1.53026 * 109.43670 * 58.57387 * 12 11 10 14 14 C 1.53188 * 109.33431 * 181.23133 * 13 12 11 15 15 N 1.46942 * 108.77995 * 305.37481 * 14 13 12 16 16 C 1.36929 * 120.64335 * 233.61523 * 15 14 13 17 17 H 1.08003 * 120.00235 * 30.82840 * 16 15 14 18 18 C 1.38815 * 120.00081 * 210.83677 * 16 15 14 19 19 N 1.31614 * 120.00001 * 11.45579 * 18 16 15 20 20 Si 1.86802 * 119.99879 * 191.46138 * 18 16 15 21 21 H 1.48500 * 109.46945 * 89.99786 * 20 18 16 22 22 H 1.48500 * 109.46705 * 209.99653 * 20 18 16 23 23 H 1.48496 * 109.47252 * 329.99355 * 20 18 16 24 24 C 1.46928 * 118.71108 * 53.63825 * 15 14 13 25 25 C 1.53048 * 109.38882 * 178.59953 * 12 11 10 26 26 C 1.53027 * 109.54569 * 298.56327 * 12 11 10 27 27 C 1.46929 * 120.64009 * 183.46466 * 9 7 4 28 28 H 1.08998 * 109.46485 * 59.99841 * 1 2 3 29 29 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46943 * 300.00447 * 1 2 3 31 31 H 1.08996 * 109.46893 * 299.99980 * 3 2 1 32 32 H 1.09008 * 109.46955 * 59.99625 * 3 2 1 33 33 H 1.09006 * 109.47186 * 185.02076 * 6 4 3 34 34 H 1.08998 * 109.47350 * 305.01945 * 6 4 3 35 35 H 1.09005 * 109.47351 * 65.02054 * 6 4 3 36 36 H 1.09004 * 109.58664 * 246.15709 * 10 9 7 37 37 H 1.09005 * 109.58993 * 6.58388 * 10 9 7 38 38 H 1.08989 * 109.63115 * 294.87172 * 11 10 9 39 39 H 1.08999 * 109.43127 * 174.73907 * 11 10 9 40 40 H 1.08996 * 109.49872 * 301.18705 * 13 12 11 41 41 H 1.09008 * 109.49338 * 61.27233 * 13 12 11 42 42 H 1.08998 * 109.58942 * 185.58623 * 14 13 12 43 43 H 1.08994 * 109.70227 * 65.23110 * 14 13 12 44 44 H 0.96995 * 120.00065 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.57928 * 186.57168 * 24 15 14 46 46 H 1.08990 * 109.70565 * 66.21737 * 24 15 14 47 47 H 1.08994 * 109.49606 * 298.69251 * 25 12 11 48 48 H 1.09000 * 109.49002 * 58.77691 * 25 12 11 49 49 H 1.08997 * 109.49374 * 301.34155 * 26 12 11 50 50 H 1.08999 * 109.49513 * 181.25773 * 26 12 11 51 51 H 1.09000 * 109.58550 * 353.40275 * 27 9 7 52 52 H 1.09002 * 109.58643 * 113.68555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1702 1.3950 -0.8409 6 6 4.3173 1.3916 1.3082 7 6 4.0822 3.4027 -0.1232 8 8 3.2022 4.2358 -0.0749 9 7 5.3641 3.7853 -0.2876 10 6 6.4330 2.7858 -0.4178 11 6 7.2228 3.0797 -1.7022 12 6 7.7176 4.5277 -1.6704 13 6 8.5945 4.7392 -0.4342 14 6 9.0633 6.1968 -0.3882 15 7 9.7245 6.5214 -1.6596 16 6 10.9890 7.0467 -1.6745 17 1 11.6905 6.7877 -0.8953 18 6 11.3691 7.9122 -2.6910 19 7 10.4631 8.4058 -3.5082 20 14 13.1666 8.3762 -2.8992 21 1 13.8246 7.4093 -3.8143 22 1 13.2618 9.7431 -3.4717 23 1 13.8422 8.3451 -1.5772 24 6 9.0024 6.2719 -2.9147 25 6 8.5346 4.8134 -2.9327 26 6 6.5189 5.4773 -1.6136 27 6 5.7203 5.2100 -0.3340 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8033 2.2370 -0.8900 32 1 1.8032 2.2371 0.8900 33 1 5.3876 1.5944 1.3478 34 1 3.8246 1.8741 2.1523 35 1 4.1494 0.3156 1.3562 36 1 7.0969 2.8463 0.4446 37 1 5.9961 1.7888 -0.4759 38 1 6.5788 2.9344 -2.5694 39 1 8.0764 2.4049 -1.7654 40 1 8.0184 4.5139 0.4633 41 1 9.4610 4.0798 -0.4858 42 1 9.7670 6.3286 0.4337 43 1 8.2059 6.8542 -0.2440 44 1 10.7287 9.0109 -4.2183 45 1 9.6660 6.4533 -3.7602 46 1 8.1387 6.9336 -2.9795 47 1 9.4016 4.1535 -2.9619 48 1 7.9157 4.6407 -3.8132 49 1 5.8814 5.3105 -2.4818 50 1 6.8716 6.5087 -1.6135 51 1 4.8127 5.8136 -0.3369 52 1 6.3252 5.4639 0.5365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570486063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -41.695726 kcal Electronic energy + Delta-G solvation = -29124.593929 eV Core-core repulsion = 25442.576479 eV Total energy + Delta-G solvation = -3682.017450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.82970 -40.19186 -37.39994 -35.81669 -34.99134 -33.00832 -32.02310 -31.59597 -29.93006 -29.49751 -28.11728 -26.79242 -25.50546 -24.55248 -23.72278 -23.19184 -21.91292 -20.24269 -19.22224 -18.70866 -17.94644 -17.10488 -16.90987 -16.77630 -16.58248 -15.84768 -15.69055 -15.51342 -15.25620 -15.13041 -14.87226 -14.84299 -14.62207 -14.51561 -14.30465 -14.07250 -13.75030 -13.32934 -13.22073 -13.12421 -13.00767 -12.96723 -12.85722 -12.72166 -12.54890 -12.32019 -12.26499 -12.22901 -12.10181 -12.03854 -11.76318 -11.62488 -11.17196 -11.05317 -11.00722 -10.90091 -10.63678 -10.48611 -9.59168 -8.65394 -8.56351 -7.83723 -5.33573 0.64560 1.46435 1.46894 1.55935 1.56220 1.61956 2.03700 2.51523 3.30503 3.45969 3.59803 3.74631 3.77785 3.82680 3.86031 3.90736 4.15650 4.19398 4.31831 4.32555 4.35752 4.37065 4.48419 4.50610 4.57421 4.65406 4.66711 4.71267 4.77340 4.82174 4.84378 4.89408 4.90495 4.93104 4.97178 5.02015 5.09008 5.10756 5.20513 5.28694 5.32510 5.39316 5.46229 5.50261 5.60409 5.64318 5.69679 5.87040 6.41790 6.43995 7.11152 7.19264 7.91225 8.43049 9.20985 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.002240 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.541086 B =12499.372944 C =12586.857123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.274 6.274 3 C -0.060 4.060 4 C -0.086 4.086 5 H 0.119 0.881 6 C -0.144 4.144 7 C 0.519 3.481 8 O -0.588 6.588 9 N -0.600 5.600 10 C 0.102 3.898 11 C -0.118 4.118 12 C -0.041 4.041 13 C -0.110 4.110 14 C 0.139 3.861 15 N -0.608 5.608 16 C -0.257 4.257 17 H 0.065 0.935 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.180 3.820 25 C -0.118 4.118 26 C -0.114 4.114 27 C 0.119 3.881 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.013 0.987 44 H 0.248 0.752 45 H 0.045 0.955 46 H -0.005 1.005 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.070 0.930 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 -20.173 8.463 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.048 6.048 3 C -0.208 4.208 4 C -0.108 4.108 5 H 0.137 0.863 6 C -0.201 4.201 7 C 0.307 3.693 8 O -0.469 6.469 9 N -0.331 5.331 10 C -0.019 4.019 11 C -0.156 4.156 12 C -0.041 4.041 13 C -0.149 4.149 14 C 0.014 3.986 15 N -0.332 5.332 16 C -0.388 4.388 17 H 0.082 0.918 18 C -0.248 4.248 19 N -0.584 5.584 20 Si 0.795 3.205 21 H -0.212 1.212 22 H -0.224 1.224 23 H -0.193 1.193 24 C 0.054 3.946 25 C -0.157 4.157 26 C -0.152 4.152 27 C -0.003 4.003 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.013 0.987 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.089 0.911 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.324 -20.503 8.388 26.936 hybrid contribution 0.105 2.320 -0.723 2.433 sum -15.219 -18.183 7.665 24.919 Atomic orbital electron populations 1.23474 0.92008 1.07576 1.05610 1.86692 1.09935 1.10080 1.98113 1.23107 0.98031 0.94353 1.05348 1.21025 0.94808 0.91704 1.03288 0.86307 1.21928 1.01909 1.02588 0.93671 1.20978 0.81766 0.91534 0.74995 1.90667 1.47902 1.55438 1.52851 1.48148 1.06880 1.07391 1.70726 1.22264 0.88937 0.92057 0.98658 1.22045 1.00363 0.95339 0.97889 1.20321 0.93577 0.95109 0.95116 1.21986 0.98741 0.96800 0.97348 1.21092 0.94844 0.94637 0.88007 1.44240 1.14513 1.73344 1.01082 1.19505 0.89353 1.19663 1.10241 0.91778 1.25891 1.01370 0.97332 1.00257 1.70153 1.33210 1.34349 1.20657 0.85271 0.80555 0.76591 0.78054 1.21203 1.22396 1.19295 1.20546 0.93389 0.91569 0.89103 1.22046 0.98651 0.97888 0.97134 1.21860 0.96274 0.99933 0.97181 1.21493 0.99126 0.81618 0.98089 0.90094 0.86570 0.89821 0.90670 0.90106 0.90084 0.92488 0.89462 0.89219 0.86922 0.91678 0.89083 0.90082 0.92191 0.93525 0.96928 0.94319 0.93615 0.98700 0.92866 0.92507 0.92908 0.92443 0.91131 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.76 113.37 1.22 0.01 16 2 S -0.27 -4.10 21.28 -56.49 -1.20 -5.30 16 3 C -0.06 -1.04 4.68 71.98 0.34 -0.71 16 4 C -0.09 -1.41 1.87 -11.54 -0.02 -1.43 16 5 H 0.12 1.63 7.17 -2.39 -0.02 1.61 16 6 C -0.14 -1.82 8.54 71.98 0.61 -1.20 16 7 C 0.52 12.28 7.00 87.66 0.61 12.89 16 8 O -0.59 -18.77 15.41 -3.01 -0.05 -18.82 16 9 N -0.60 -13.17 2.97 -818.06 -2.43 -15.60 16 10 C 0.10 1.63 4.49 86.51 0.39 2.02 16 11 C -0.12 -2.38 4.92 30.82 0.15 -2.23 16 12 C -0.04 -1.16 0.51 -52.13 -0.03 -1.19 16 13 C -0.11 -3.23 4.14 30.67 0.13 -3.10 16 14 C 0.14 5.52 6.04 86.36 0.52 6.04 16 15 N -0.61 -29.97 2.99 -699.09 -2.09 -32.06 16 16 C -0.26 -14.07 9.59 84.04 0.81 -13.26 16 17 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 18 C -0.05 -3.00 5.03 84.86 0.43 -2.57 16 19 N -0.94 -55.99 11.05 21.65 0.24 -55.75 16 20 Si 0.97 45.12 29.57 68.60 2.03 47.15 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C 0.18 8.57 4.79 86.36 0.41 8.98 16 25 C -0.12 -4.22 4.90 30.67 0.15 -4.07 16 26 C -0.11 -3.48 4.15 30.67 0.13 -3.35 16 27 C 0.12 3.19 5.96 86.36 0.52 3.70 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 0.84 5.92 -2.38 -0.01 0.83 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.98 7.32 -2.38 -0.02 0.96 16 36 H 0.09 1.26 6.66 -2.38 -0.02 1.24 16 37 H 0.11 1.21 4.99 -2.38 -0.01 1.20 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.92 4.98 -2.39 -0.01 1.91 16 41 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 43 H 0.01 0.52 6.73 -2.39 -0.02 0.50 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.05 2.53 6.08 -2.39 -0.01 2.52 16 46 H -0.01 -0.26 6.67 -2.39 -0.02 -0.27 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.06 2.13 4.99 -2.39 -0.01 2.12 16 51 H 0.07 2.13 7.00 -2.39 -0.02 2.12 16 52 H 0.08 1.98 6.74 -2.39 -0.02 1.96 16 Total: -1.00 -68.77 388.93 3.76 -65.00 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.90 Total: 14.84 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 6.36 Total: 0.53 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -4.28 Total: -103.40 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -1.20 Total: -5.30 kcal Total: -68.77 3.76 -65.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570486063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.309 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds