Wall clock time and date at job start Sat Apr 11 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 120.00058 * 2 1 4 4 C 1.53002 * 109.47145 * 125.00114 * 3 2 1 5 5 C 1.52997 * 109.47333 * 180.02562 * 4 3 2 6 6 N 1.46905 * 109.47276 * 180.02562 * 5 4 3 7 7 C 1.46843 * 111.00022 * 190.00155 * 6 5 4 8 8 C 1.53032 * 109.52496 * 185.83780 * 7 6 5 9 9 C 1.53119 * 109.27681 * 300.81998 * 8 7 6 10 10 C 1.53004 * 109.52445 * 177.55826 * 9 8 7 11 11 H 1.08995 * 109.47216 * 59.99900 * 10 9 8 12 12 C 1.52999 * 109.47083 * 299.99896 * 10 9 8 13 13 N 1.46498 * 109.47065 * 179.97438 * 10 9 8 14 14 C 1.34777 * 119.99828 * 204.72115 * 13 10 9 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 10 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 10 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00163 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46850 * 90.00589 * 22 20 18 24 24 H 1.48498 * 109.47329 * 210.00016 * 22 20 18 25 25 H 1.48499 * 109.47220 * 330.01003 * 22 20 18 26 26 C 1.53119 * 109.16249 * 57.65141 * 9 8 7 27 27 C 1.46846 * 110.99602 * 314.20907 * 6 5 4 28 28 H 1.08002 * 119.99843 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99736 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99843 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47408 * 5.00230 * 3 2 1 32 32 H 1.08999 * 109.47101 * 244.99777 * 3 2 1 33 33 H 1.08996 * 109.46873 * 59.99789 * 4 3 2 34 34 H 1.08999 * 109.46846 * 299.99819 * 4 3 2 35 35 H 1.08996 * 109.47382 * 60.00017 * 5 4 3 36 36 H 1.08997 * 109.47244 * 300.00114 * 5 4 3 37 37 H 1.09005 * 109.46314 * 65.81860 * 7 6 5 38 38 H 1.09000 * 109.45425 * 305.84915 * 7 6 5 39 39 H 1.08997 * 109.50651 * 180.87593 * 8 7 6 40 40 H 1.09001 * 109.53604 * 60.77848 * 8 7 6 41 41 H 1.09005 * 109.52298 * 297.68499 * 9 8 7 42 42 H 1.08995 * 109.47098 * 300.00077 * 12 10 9 43 43 H 1.09003 * 109.47054 * 59.99725 * 12 10 9 44 44 H 1.08996 * 109.47245 * 179.97438 * 12 10 9 45 45 H 0.97001 * 120.00384 * 25.00562 * 13 10 9 46 46 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 47 47 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 48 48 H 0.96991 * 119.99795 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.50214 * 62.29102 * 26 9 8 50 50 H 1.09001 * 109.50676 * 182.40214 * 26 9 8 51 51 H 1.09009 * 109.46266 * 294.17668 * 27 6 5 52 52 H 1.08997 * 109.46425 * 54.15775 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1820 6 7 4.7330 2.6848 2.3162 7 6 5.3107 4.0235 2.4910 8 6 6.3819 3.9796 3.5830 9 6 5.7492 3.5013 4.8928 10 6 6.8275 3.3971 5.9734 11 1 7.2839 4.3749 6.1267 12 6 7.8984 2.3981 5.5305 13 7 6.2208 2.9400 7.2261 14 6 6.8056 3.2335 8.4044 15 8 7.8312 3.8803 8.4279 16 6 6.1849 2.7581 9.6928 17 16 7.1968 3.3083 11.0890 18 6 6.2664 2.6348 12.4252 19 1 5.3634 2.0762 12.2271 20 6 6.6945 2.8211 13.7323 21 7 7.7952 3.5014 13.9738 22 14 5.7078 2.1077 15.1490 23 1 6.1925 0.7363 15.4486 24 1 5.8748 2.9651 16.3499 25 1 4.2717 2.0543 14.7746 26 6 5.1126 2.1266 4.6709 27 6 4.0782 2.2242 3.5473 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9314 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1130 35 1 3.0946 3.4845 1.2719 36 1 4.3574 2.7563 0.2507 37 1 4.5261 4.7228 2.7798 38 1 5.7610 4.3498 1.5535 39 1 6.7997 4.9765 3.7234 40 1 7.1742 3.2911 3.2890 41 1 4.9846 4.2112 5.2085 42 1 7.4419 1.4203 5.3772 43 1 8.3496 2.7386 4.5985 44 1 8.6667 2.3241 6.3001 45 1 5.4005 2.4227 7.2073 46 1 5.1809 3.1718 9.7867 47 1 6.1304 1.6694 9.6897 48 1 8.0941 3.6319 14.8872 49 1 5.8845 1.4086 4.3936 50 1 4.6235 1.7996 5.5885 51 1 3.2994 2.9320 3.8312 52 1 3.6335 1.2437 3.3771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571646756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:15 Heat of formation + Delta-G solvation = -56.814942 kcal Electronic energy + Delta-G solvation = -26874.526159 eV Core-core repulsion = 23191.853091 eV Total energy + Delta-G solvation = -3682.673068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.17263 -40.03066 -37.74396 -36.29682 -34.58793 -34.25411 -32.38253 -31.81658 -30.83026 -29.58471 -27.66292 -26.99981 -25.12856 -24.45944 -22.88125 -21.50317 -21.45023 -20.64180 -20.12997 -19.78104 -17.92739 -17.40187 -16.88591 -16.83486 -16.60393 -16.38214 -15.96749 -15.80079 -15.60200 -15.53285 -14.98429 -14.74040 -14.60907 -14.44838 -14.20840 -14.01546 -13.81128 -13.48543 -13.41975 -13.16591 -12.95618 -12.89425 -12.78026 -12.61946 -12.59849 -12.43283 -12.26309 -11.89183 -11.74917 -11.72313 -11.60849 -11.53713 -11.29840 -11.14308 -10.94198 -10.86289 -10.27409 -10.18711 -10.08369 -9.20303 -8.66535 -8.34646 -6.12694 1.27261 1.42221 1.42292 1.47235 1.57730 1.64169 2.26324 2.31773 2.97236 2.99401 3.32497 3.64455 3.76707 3.81332 3.94058 3.99928 4.06849 4.21908 4.28536 4.29272 4.31541 4.40028 4.42544 4.47318 4.50199 4.50876 4.57557 4.65262 4.67114 4.75551 4.77906 4.84223 4.92708 4.93381 4.98630 5.03198 5.06342 5.09887 5.21774 5.24744 5.27426 5.30995 5.37586 5.41735 5.55257 5.58811 5.78229 5.91356 6.19784 6.19848 6.20812 6.53766 7.06563 7.28125 8.74601 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.001790 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.738055 B =15634.759611 C =17072.516849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.091 4.091 4 C -0.112 4.112 5 C 0.057 3.943 6 N -0.544 5.544 7 C 0.060 3.940 8 C -0.109 4.109 9 C -0.083 4.083 10 C 0.149 3.851 11 H 0.063 0.937 12 C -0.160 4.160 13 N -0.709 5.709 14 C 0.534 3.466 15 O -0.565 6.565 16 C -0.130 4.130 17 S -0.151 6.151 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 C -0.114 4.114 27 C 0.052 3.948 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.029 0.971 45 H 0.412 0.588 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.271 0.729 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.028 0.972 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -5.443 -31.553 34.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.178 4.178 3 C -0.128 4.128 4 C -0.150 4.150 5 C -0.071 4.071 6 N -0.269 5.269 7 C -0.068 4.068 8 C -0.147 4.147 9 C -0.103 4.103 10 C 0.045 3.955 11 H 0.081 0.919 12 C -0.218 4.218 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.281 4.281 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 C -0.151 4.151 27 C -0.075 4.075 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.250 0.750 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.046 0.954 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.388 -4.610 -31.520 33.830 hybrid contribution -2.298 -0.508 1.313 2.695 sum -13.686 -5.118 -30.207 33.555 Atomic orbital electron populations 1.24008 0.96185 1.02305 1.01483 1.23083 0.96185 0.98916 0.99634 1.20710 0.98009 0.95213 0.98916 1.21624 0.97573 0.97411 0.98348 1.22151 0.93696 0.96982 0.94256 1.62029 1.34697 1.25475 1.04668 1.22051 0.96601 0.88795 0.99361 1.21645 0.98323 1.01983 0.92737 1.21366 0.96355 0.98439 0.94105 1.20964 0.94159 0.97888 0.82490 0.91922 1.22224 0.98129 1.00064 1.01336 1.45926 1.28972 1.56943 1.04459 1.20055 0.83865 0.78748 0.85363 1.90684 1.25465 1.40583 1.87614 1.23385 1.04000 1.05402 0.95362 1.85572 1.36513 1.72968 0.97323 1.23213 1.13000 1.40269 0.93012 0.89933 1.26132 0.96397 0.95164 1.01453 1.70184 1.23378 1.39415 1.21786 0.84953 0.78595 0.78103 0.76320 1.19293 1.20278 1.18192 1.21727 0.98901 0.96472 0.98034 1.22191 0.95089 1.00854 0.89393 0.88436 0.88027 0.87047 0.91631 0.90332 0.91159 0.91835 0.95094 0.90181 0.95235 0.89813 0.91031 0.90185 0.91171 0.90786 0.89797 0.95161 0.75025 0.87391 0.87322 0.91996 0.90324 0.90885 0.95382 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 14.32 67.78 0.97 -0.99 16 2 C -0.16 -1.55 9.52 25.64 0.24 -1.31 16 3 C -0.09 -0.77 5.66 29.85 0.17 -0.61 16 4 C -0.11 -1.06 4.44 30.59 0.14 -0.92 16 5 C 0.06 0.59 5.27 86.30 0.46 1.04 16 6 N -0.54 -6.91 4.81 -896.38 -4.31 -11.22 16 7 C 0.06 0.75 5.42 86.32 0.47 1.22 16 8 C -0.11 -1.52 5.09 30.64 0.16 -1.36 16 9 C -0.08 -1.33 2.25 -10.71 -0.02 -1.35 16 10 C 0.15 3.37 2.41 44.99 0.11 3.48 16 11 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 12 C -0.16 -3.45 8.78 71.98 0.63 -2.82 16 13 N -0.71 -18.13 5.00 -442.53 -2.21 -20.34 16 14 C 0.53 19.96 7.81 87.66 0.68 20.64 16 15 O -0.57 -26.53 15.53 -3.04 -0.05 -26.58 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 18 C -0.55 -31.47 9.50 67.96 0.65 -30.82 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 22 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 C -0.11 -1.52 4.87 30.65 0.15 -1.37 16 27 C 0.05 0.66 4.85 86.32 0.42 1.07 16 28 H 0.10 0.86 7.84 -2.91 -0.02 0.84 16 29 H 0.10 0.84 8.06 -2.91 -0.02 0.81 16 30 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.06 0.56 7.79 -2.39 -0.02 0.54 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.66 6.21 -2.39 -0.01 0.64 16 35 H 0.03 0.34 8.08 -2.39 -0.02 0.32 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.14 6.31 -2.39 -0.02 1.12 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.07 1.38 6.37 -2.39 -0.02 1.36 16 43 H 0.08 1.50 6.38 -2.39 -0.02 1.48 16 44 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.41 7.86 6.93 -92.71 -0.64 7.22 16 46 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 47 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 48 H 0.27 15.53 8.31 -92.72 -0.77 14.76 16 49 H 0.08 1.12 6.31 -2.38 -0.02 1.10 16 50 H 0.07 0.88 6.62 -2.39 -0.02 0.86 16 51 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 52 H 0.09 1.01 5.81 -2.39 -0.01 0.99 16 Total: -1.00 -74.64 415.85 0.94 -73.70 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.24 Total: 21.96 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 6.12 Total: -17.64 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -6.23 Total: -87.60 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -74.64 0.94 -73.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571646756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.883 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds