Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47375 * 2 1 4 4 C 1.36737 * 127.14068 * 83.26894 * 3 2 1 5 5 C 1.50703 * 126.34696 * 359.94055 * 4 3 2 6 6 C 1.53001 * 109.47209 * 96.04664 * 5 4 3 7 7 H 1.09004 * 109.46684 * 57.02797 * 6 5 4 8 8 O 1.42902 * 109.47136 * 297.03585 * 6 5 4 9 9 C 1.50697 * 109.47504 * 177.03281 * 6 5 4 10 10 H 1.07998 * 119.99671 * 0.02562 * 9 6 5 11 11 C 1.37869 * 120.00104 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00009 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 119.99896 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47164 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47298 * 119.99660 * 13 11 9 16 16 H 1.48501 * 109.46979 * 239.99655 * 13 11 9 17 17 N 1.30297 * 107.30902 * 179.97438 * 4 3 2 18 18 N 1.28534 * 110.05015 * 359.72701 * 17 4 3 19 19 C 1.31215 * 109.85932 * 0.45193 * 18 17 4 20 20 N 1.38580 * 126.47248 * 179.82624 * 19 18 17 21 21 C 1.46848 * 110.99721 * 357.54762 * 20 19 18 22 22 C 1.53044 * 109.52191 * 174.16496 * 21 20 19 23 23 C 1.53119 * 109.27932 * 59.17624 * 22 21 20 24 24 C 1.52993 * 109.52215 * 182.44059 * 23 22 21 25 25 C 1.53005 * 109.47264 * 294.68748 * 24 23 22 26 26 F 1.39895 * 109.46969 * 180.02562 * 25 24 23 27 27 C 1.53120 * 109.16212 * 302.35004 * 23 22 21 28 28 C 1.46843 * 110.99917 * 233.33931 * 20 19 18 29 29 H 1.09000 * 109.46590 * 291.89940 * 1 2 3 30 30 H 1.08999 * 109.46530 * 51.89630 * 1 2 3 31 31 H 1.09002 * 109.47334 * 171.89377 * 1 2 3 32 32 H 1.09001 * 109.47124 * 239.99439 * 2 1 3 33 33 H 1.09003 * 109.46812 * 119.99975 * 2 1 3 34 34 H 1.08998 * 109.47162 * 216.04979 * 5 4 3 35 35 H 1.09004 * 109.46860 * 336.05055 * 5 4 3 36 36 H 0.96695 * 114.00019 * 301.07604 * 8 6 5 37 37 H 0.97001 * 119.99454 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.46432 * 294.17920 * 21 20 19 39 39 H 1.08998 * 109.46113 * 54.14549 * 21 20 19 40 40 H 1.08996 * 109.49928 * 179.12435 * 22 21 20 41 41 H 1.09005 * 109.49926 * 299.23773 * 22 21 20 42 42 H 1.09001 * 109.52147 * 62.25288 * 23 22 21 43 43 H 1.09000 * 109.47050 * 54.68577 * 24 23 22 44 44 H 1.09001 * 109.47062 * 174.68491 * 24 23 22 45 45 H 1.09000 * 109.46948 * 299.99891 * 25 24 23 46 46 H 1.08993 * 109.47239 * 59.99538 * 25 24 23 47 47 H 1.09003 * 109.50127 * 297.70938 * 27 23 22 48 48 H 1.09001 * 109.50155 * 177.59462 * 27 23 22 49 49 H 1.09004 * 109.46548 * 305.85492 * 28 20 19 50 50 H 1.09007 * 109.46513 * 65.82007 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1732 2.2021 1.0825 5 6 1.8695 1.8551 2.5173 6 6 3.1533 1.4007 3.2148 7 1 3.9061 2.1852 3.1371 8 8 3.6392 0.2108 2.5902 9 6 2.8646 1.1235 4.6676 10 1 1.8653 1.2576 5.0547 11 6 3.8761 0.6987 5.5026 12 7 5.0928 0.5350 5.0311 13 14 3.5179 0.3544 7.3034 14 1 2.0822 0.6129 7.5808 15 1 3.8339 -1.0641 7.6085 16 1 4.3532 1.2413 8.1525 17 7 2.6312 3.3402 0.6436 18 7 2.7806 3.2926 -0.6322 19 6 2.4138 2.1151 -1.0803 20 7 2.4306 1.6943 -2.4005 21 6 2.8706 2.7753 -3.2918 22 6 3.0165 2.2360 -4.7166 23 6 1.6703 1.6779 -5.1863 24 6 1.8244 1.0822 -6.5870 25 6 2.1614 2.1958 -7.5806 26 9 2.3018 1.6512 -8.8615 27 6 1.2114 0.5875 -4.2141 28 6 1.1178 1.1746 -2.8040 29 1 -0.3632 0.3833 0.9535 30 1 -0.3632 0.6342 -0.8087 31 1 -0.3634 -1.0174 -0.1449 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.4703 2.7322 3.0265 35 1 1.1346 1.0507 2.5488 36 1 3.0131 -0.5260 2.6069 37 1 5.8045 0.2365 5.6188 38 1 2.1329 3.5778 -3.2810 39 1 3.8309 3.1605 -2.9490 40 1 3.3280 3.0422 -5.3807 41 1 3.7641 1.4428 -4.7306 42 1 0.9319 2.4794 -5.2095 43 1 2.6271 0.3447 -6.5819 44 1 0.8916 0.6019 -6.8823 45 1 1.3588 2.9333 -7.5858 46 1 3.0942 2.6762 -7.2854 47 1 1.9306 -0.2316 -4.2203 48 1 0.2332 0.2160 -4.5193 49 1 0.8051 0.3972 -2.1069 50 1 0.3883 1.9846 -2.7955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646714635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -54.173157 kcal Electronic energy + Delta-G solvation = -30747.706964 eV Core-core repulsion = 26531.228027 eV Total energy + Delta-G solvation = -4216.478937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -48.50867 -43.99176 -40.37795 -38.12255 -36.90165 -36.15115 -34.27052 -33.03001 -32.20021 -31.59304 -30.91215 -29.32166 -27.29457 -25.70279 -24.94052 -24.60544 -23.32934 -22.79785 -21.86788 -21.19765 -20.71088 -19.19193 -18.41981 -17.59141 -17.04198 -17.01282 -16.74297 -16.67804 -16.40469 -16.13451 -15.99349 -15.79666 -15.56154 -15.14583 -14.97749 -14.68039 -14.58662 -14.18020 -14.06944 -13.86001 -13.56767 -13.29571 -13.24834 -12.94493 -12.84445 -12.74835 -12.62206 -12.37789 -12.34633 -12.29735 -12.18032 -11.99622 -11.83369 -11.67772 -11.43034 -11.30902 -11.28427 -11.12202 -11.02764 -10.75932 -10.71959 -10.22908 -9.16285 -8.13057 -6.39976 0.85519 1.29847 1.42291 1.44580 1.56278 1.86131 2.40453 2.61698 3.13325 3.46080 3.49658 3.60985 3.66829 3.71574 3.90556 3.99188 4.02704 4.08474 4.12179 4.15231 4.18854 4.30701 4.35213 4.37444 4.39518 4.50218 4.51138 4.54891 4.60368 4.68366 4.76703 4.80472 4.86549 4.88140 4.94525 4.99075 5.04743 5.10338 5.18395 5.19380 5.22123 5.26973 5.46554 5.58516 5.63217 5.70845 5.77090 6.02740 6.24786 6.72432 7.32842 7.51609 7.82211 8.91858 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.028584 B = 0.002222 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.348844 B =12599.154421 C =12847.916213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 N -0.469 5.469 4 C 0.206 3.794 5 C -0.044 4.044 6 C 0.243 3.757 7 H 0.008 0.992 8 O -0.575 6.575 9 C -0.579 4.579 10 H 0.073 0.927 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.964 3.036 14 H -0.256 1.256 15 H -0.279 1.279 16 H -0.286 1.286 17 N -0.341 5.341 18 N -0.367 5.367 19 C 0.351 3.649 20 N -0.445 5.445 21 C 0.072 3.928 22 C -0.109 4.109 23 C -0.083 4.083 24 C -0.137 4.137 25 C 0.050 3.950 26 F -0.240 7.240 27 C -0.103 4.103 28 C 0.038 3.962 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.355 0.645 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 -3.956 -23.153 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.029 4.029 3 N -0.164 5.164 4 C -0.063 4.063 5 C -0.084 4.084 6 C 0.184 3.816 7 H 0.026 0.974 8 O -0.380 6.380 9 C -0.617 4.617 10 H 0.091 0.909 11 C -0.179 4.179 12 N -0.540 5.540 13 Si 0.789 3.211 14 H -0.180 1.180 15 H -0.205 1.205 16 H -0.212 1.212 17 N -0.179 5.179 18 N -0.211 5.211 19 C -0.007 4.007 20 N -0.170 5.170 21 C -0.054 4.054 22 C -0.147 4.147 23 C -0.102 4.102 24 C -0.174 4.174 25 C -0.005 4.005 26 F -0.222 7.222 27 C -0.140 4.140 28 C -0.088 4.088 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.143 -2.606 -23.342 26.440 hybrid contribution -0.678 -0.811 1.417 1.768 sum -12.821 -3.417 -21.925 25.627 Atomic orbital electron populations 1.22317 0.91822 1.05283 1.03042 1.22289 0.97000 0.77474 1.06130 1.46294 1.50601 1.14496 1.05030 1.25003 1.01284 0.87378 0.92649 1.20859 1.00676 1.03114 0.83759 1.19083 0.88854 0.83721 0.89898 0.97395 1.86610 1.47129 1.23381 1.80836 1.22010 0.96456 1.48042 0.95194 0.90921 1.25964 0.94573 0.94186 1.03215 1.70260 1.01795 1.44962 1.36935 0.85442 0.78921 0.77600 0.79175 1.17992 1.20458 1.21213 1.73838 1.19112 1.21333 1.03603 1.74352 1.26139 1.16713 1.03931 1.22931 1.00426 0.88287 0.89047 1.58825 1.28872 1.34484 0.94773 1.22058 1.00673 0.90284 0.92433 1.21800 0.98382 1.01920 0.92574 1.21134 0.97069 0.98265 0.93720 1.22080 1.03778 0.98196 0.93384 1.22313 1.04289 0.96686 0.77163 1.92727 1.97624 1.88402 1.43402 1.21653 1.03649 0.98143 0.90594 1.22798 0.86013 0.99973 0.99981 0.92106 0.91784 0.86870 0.86966 0.88326 0.88940 0.87995 0.79975 0.93101 0.93678 0.91601 0.88813 0.90746 0.89994 0.90735 0.89846 0.89421 0.89671 0.90380 0.88189 0.88357 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.53 71.98 0.69 -1.90 16 2 C 0.09 2.05 5.51 86.38 0.48 2.53 16 3 N -0.47 -15.27 2.80 -514.85 -1.44 -16.72 16 4 C 0.21 8.34 7.04 137.64 0.97 9.31 16 5 C -0.04 -1.75 5.23 29.85 0.16 -1.59 16 6 C 0.24 12.32 2.83 29.85 0.08 12.41 16 7 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 8 O -0.58 -28.64 12.11 -148.98 -1.80 -30.45 16 9 C -0.58 -30.53 8.77 25.60 0.22 -30.31 16 10 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 11 C 0.02 1.26 5.40 84.65 0.46 1.71 16 12 N -0.90 -54.15 12.84 21.44 0.28 -53.88 16 13 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 14 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 15 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 17 N -0.34 -15.76 12.18 -49.53 -0.60 -16.37 16 18 N -0.37 -15.44 11.22 -58.00 -0.65 -16.09 16 19 C 0.35 11.90 7.25 260.11 1.89 13.79 16 20 N -0.44 -10.95 4.66 -706.14 -3.29 -14.24 16 21 C 0.07 1.60 4.90 86.33 0.42 2.03 16 22 C -0.11 -1.45 5.08 30.65 0.16 -1.30 16 23 C -0.08 -0.79 2.25 -10.72 -0.02 -0.81 16 24 C -0.14 -1.11 5.14 30.59 0.16 -0.95 16 25 C 0.05 0.46 7.32 71.98 0.53 0.99 16 26 F -0.24 -3.89 17.36 44.97 0.78 -3.11 16 27 C -0.10 -1.04 5.38 30.65 0.16 -0.87 16 28 C 0.04 0.63 4.74 86.33 0.41 1.04 16 29 H 0.06 1.08 7.72 -2.39 -0.02 1.06 16 30 H 0.06 0.97 6.37 -2.39 -0.02 0.96 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 2.10 6.99 -2.39 -0.02 2.09 16 33 H 0.10 2.34 6.55 -2.39 -0.02 2.32 16 34 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.10 3.33 7.41 -2.38 -0.02 3.31 16 36 H 0.35 14.57 7.86 -74.06 -0.58 13.99 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.80 7.88 -2.39 -0.02 1.78 16 40 H 0.09 0.93 6.71 -2.39 -0.02 0.91 16 41 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 0.64 6.64 -2.39 -0.02 0.63 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.10 1.47 3.22 -2.39 -0.01 1.46 16 50 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -77.96 391.51 2.41 -75.55 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.37 Total: 24.85 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 6.75 Total: 6.08 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.72 Total: -117.29 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.80 Total: -30.45 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -77.96 2.41 -75.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646714635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.376 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds