Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99807 * 2 1 4 4 C 1.53006 * 109.47031 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47167 * 184.39143 * 4 3 2 6 6 C 1.36746 * 127.13452 * 272.30312 * 5 4 3 7 7 C 1.50697 * 126.34674 * 359.96811 * 6 5 4 8 8 H 1.08999 * 109.47371 * 0.28657 * 7 6 5 9 9 C 1.53001 * 109.47033 * 120.28510 * 7 6 5 10 10 C 1.53002 * 109.46987 * 240.28299 * 7 6 5 11 11 C 1.50700 * 109.46971 * 174.99969 * 10 7 6 12 12 H 1.07997 * 120.00330 * 0.02562 * 11 10 7 13 13 C 1.37874 * 119.99984 * 180.02562 * 11 10 7 14 14 N 1.31520 * 120.00116 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00436 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46966 * 89.99837 * 15 13 11 17 17 H 1.48494 * 109.47543 * 210.00383 * 15 13 11 18 18 H 1.48504 * 109.46849 * 330.00186 * 15 13 11 19 19 N 1.30301 * 107.30274 * 180.22656 * 6 5 4 20 20 N 1.28524 * 110.05438 * 359.77615 * 19 6 5 21 21 C 1.31216 * 109.86203 * 0.02562 * 20 19 6 22 22 N 1.38578 * 126.47443 * 179.97438 * 21 20 19 23 23 C 1.47900 * 111.00076 * 36.01173 * 22 21 20 24 24 C 1.53996 * 107.05732 * 214.15704 * 23 22 21 25 25 C 1.54595 * 105.14065 * 1.22186 * 24 23 22 26 26 H 1.09004 * 110.72516 * 263.60225 * 25 24 23 27 27 C 1.53002 * 110.72611 * 140.49427 * 25 24 23 28 28 F 1.39894 * 109.47192 * 181.45509 * 27 25 24 29 29 C 1.48527 * 110.99953 * 278.61160 * 22 21 20 30 30 H 1.09008 * 109.46812 * 59.99762 * 1 2 3 31 31 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47168 * 300.00327 * 1 2 3 33 33 H 1.09005 * 109.47374 * 60.00041 * 3 2 1 34 34 H 1.08998 * 109.47363 * 299.99421 * 3 2 1 35 35 H 1.09001 * 109.46952 * 64.38745 * 4 3 2 36 36 H 1.08997 * 109.46713 * 304.39150 * 4 3 2 37 37 H 1.08997 * 109.47247 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.47486 * 300.00027 * 9 7 6 39 39 H 1.08999 * 109.46922 * 59.99872 * 9 7 6 40 40 H 1.08995 * 109.47154 * 295.00096 * 10 7 6 41 41 H 1.08997 * 109.46754 * 55.00530 * 10 7 6 42 42 H 0.97000 * 120.00461 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.91685 * 333.50477 * 23 22 21 44 44 H 1.08993 * 109.91975 * 94.60512 * 23 22 21 45 45 H 1.08997 * 110.30927 * 120.13705 * 24 23 22 46 46 H 1.08995 * 110.31032 * 242.20629 * 24 23 22 47 47 H 1.08998 * 109.46799 * 301.45749 * 27 25 24 48 48 H 1.08999 * 109.47263 * 61.45338 * 27 25 24 49 49 H 1.08999 * 110.67230 * 278.15567 * 29 22 21 50 50 H 1.08999 * 110.66903 * 41.28803 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1310 2.5189 0.1064 6 6 4.4335 3.3716 -0.9190 7 6 4.2162 3.1145 -2.3879 8 1 3.7678 2.1301 -2.5221 9 6 3.2820 4.1827 -2.9598 10 6 5.5593 3.1672 -3.1190 11 6 5.3596 2.7898 -4.5642 12 1 4.3734 2.5379 -4.9253 13 6 6.4359 2.7659 -5.4255 14 7 7.6370 3.0721 -4.9857 15 14 6.1885 2.2988 -7.2171 16 1 5.8971 3.5194 -8.0112 17 1 7.4214 1.6537 -7.7354 18 1 5.0499 1.3520 -7.3290 19 7 4.9496 4.4451 -0.3909 20 7 4.9891 4.3316 0.8887 21 6 4.4967 3.1698 1.2486 22 7 4.3755 2.6919 2.5437 23 6 4.0381 3.7841 3.4822 24 6 4.7323 3.4619 4.8186 25 6 5.5025 2.1454 4.5664 26 1 4.9210 1.2875 4.9042 27 6 6.8682 2.1765 5.2556 28 9 7.5550 0.9886 4.9833 29 6 5.6620 2.1271 3.0253 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8630 0.7130 -0.9258 36 1 3.8514 0.5775 0.8489 37 1 3.1252 3.9971 -4.0224 38 1 2.3252 4.1453 -2.4390 39 1 3.7304 5.1671 -2.8256 40 1 5.9657 4.1768 -3.0599 41 1 6.2539 2.4680 -2.6535 42 1 8.3942 3.0557 -5.5918 43 1 4.4041 4.7343 3.0933 44 1 2.9584 3.8320 3.6235 45 1 5.4247 4.2597 5.0871 46 1 3.9916 3.3237 5.6061 47 1 7.4443 3.0231 4.8822 48 1 6.7298 2.2777 6.3320 49 1 5.7935 1.1071 2.6643 50 1 6.4974 2.7559 2.7175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649094371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -19.523291 kcal Electronic energy + Delta-G solvation = -30768.581278 eV Core-core repulsion = 26553.604872 eV Total energy + Delta-G solvation = -4214.976406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -47.85086 -42.74651 -39.23797 -38.19444 -35.47535 -34.90766 -33.30824 -32.11809 -29.96292 -29.63922 -28.50501 -26.98863 -26.54919 -25.78613 -24.14133 -23.59196 -22.86733 -21.71572 -20.85924 -20.36902 -19.11436 -17.52834 -16.86310 -16.77463 -16.53461 -16.17486 -16.08631 -15.89742 -15.54996 -15.38854 -14.85630 -14.60139 -14.54593 -14.18320 -13.94083 -13.52326 -13.28736 -13.26851 -12.73642 -12.52168 -12.36479 -12.19140 -11.85925 -11.76713 -11.72291 -11.57366 -11.49622 -11.31492 -11.09073 -11.04133 -10.92076 -10.87264 -10.77610 -10.53106 -10.35764 -10.02148 -9.96087 -9.93557 -9.59886 -9.14545 -9.06793 -8.37555 -8.31086 -6.01001 -4.04860 1.93614 2.28573 3.18755 3.31542 3.38183 3.40064 3.42067 3.84230 4.03857 4.24709 4.28549 4.43407 4.59134 4.65435 4.71475 4.76073 4.85516 4.89763 5.08102 5.11499 5.12161 5.14620 5.20524 5.22393 5.29510 5.33385 5.35139 5.38384 5.42980 5.48281 5.55719 5.64697 5.70622 5.80219 5.89367 5.99458 6.04286 6.17572 6.25428 6.37709 6.65169 6.73977 6.83560 6.86683 7.00303 7.35043 7.60807 7.76311 7.97432 8.33433 9.00413 9.10086 9.58895 11.10034 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.003177 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.697682 B = 8810.333369 C =10218.473721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.054 3.946 4 C 0.116 3.884 5 N -0.467 5.467 6 C 0.222 3.778 7 C -0.004 4.004 8 H 0.074 0.926 9 C -0.125 4.125 10 C 0.039 3.961 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 N -0.283 5.283 20 N -0.313 5.313 21 C 0.316 3.684 22 N -0.442 5.442 23 C 0.046 3.954 24 C -0.120 4.120 25 C -0.123 4.123 26 H 0.098 0.902 27 C 0.071 3.929 28 F -0.216 7.216 29 C 0.050 3.950 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.014 0.986 42 H 0.261 0.739 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 -3.720 20.628 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.024 4.024 4 C -0.008 4.008 5 N -0.161 5.161 6 C -0.045 4.045 7 C -0.026 4.026 8 H 0.092 0.908 9 C -0.183 4.183 10 C 0.001 3.999 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 N -0.121 5.121 20 N -0.157 5.157 21 C -0.040 4.040 22 N -0.167 5.167 23 C -0.081 4.081 24 C -0.159 4.159 25 C -0.143 4.143 26 H 0.116 0.884 27 C 0.015 3.985 28 F -0.197 7.197 29 C -0.077 4.077 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.823 -2.927 20.666 23.511 hybrid contribution -0.229 -0.891 -1.048 1.394 sum -11.051 -3.818 19.618 22.838 Atomic orbital electron populations 1.22762 0.80325 1.02937 1.00207 1.87803 1.20229 1.26840 1.95531 1.22707 0.92910 0.85374 1.01430 1.21483 0.92151 0.81024 1.06125 1.46162 1.47640 1.16014 1.06333 1.25747 0.98448 0.86680 0.93584 1.20053 1.01881 0.99223 0.81400 0.90818 1.21674 0.96277 0.98898 1.01464 1.19109 0.88251 0.98601 0.93967 1.21125 0.94173 1.46741 0.93902 0.92312 1.24997 0.95204 0.95322 0.98686 1.69980 0.99134 1.48362 1.35398 0.86602 0.77586 0.78654 0.85208 1.20595 1.21272 1.19856 1.74065 1.18026 1.20317 0.99714 1.74471 1.18826 1.15530 1.06827 1.22379 1.03082 0.91243 0.87335 1.61485 1.29694 1.29273 0.96261 1.22881 1.01226 0.93629 0.90378 1.22372 0.99536 0.96479 0.97465 1.22701 0.96312 1.00132 0.95144 0.88365 1.22028 0.91324 0.84176 1.00924 1.92785 1.81321 1.49967 1.95615 1.23362 0.89682 1.01123 0.93582 0.93742 0.89296 0.94039 0.92515 0.92309 0.87484 0.87737 0.90529 0.95084 0.91973 0.94937 0.96767 0.92902 0.90432 0.89826 0.90395 0.90081 0.90426 0.90279 0.89197 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.60 10.70 -35.23 -0.38 -4.97 16 3 C 0.05 0.65 6.26 37.16 0.23 0.88 16 4 C 0.12 1.57 6.21 -4.04 -0.03 1.54 16 5 N -0.47 -7.76 2.81 -114.09 -0.32 -8.08 16 6 C 0.22 4.38 6.58 -154.00 -1.01 3.37 16 7 C 0.00 -0.09 2.71 -91.77 -0.25 -0.34 16 8 H 0.07 1.39 7.00 -51.93 -0.36 1.03 16 9 C -0.13 -2.33 8.99 37.16 0.33 -1.99 16 10 C 0.04 0.99 4.43 -27.88 -0.12 0.87 16 11 C -0.52 -14.10 8.41 -34.44 -0.29 -14.39 16 12 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 15 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 N -0.28 -6.11 12.18 32.99 0.40 -5.71 16 20 N -0.31 -6.08 11.06 30.31 0.34 -5.74 16 21 C 0.32 5.19 6.70 -318.88 -2.14 3.05 16 22 N -0.44 -5.60 5.31 -170.55 -0.91 -6.51 16 23 C 0.05 0.48 6.63 -2.75 -0.02 0.46 16 24 C -0.12 -0.86 6.51 -25.37 -0.17 -1.02 16 25 C -0.12 -0.99 3.41 -88.75 -0.30 -1.29 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 27 C 0.07 0.52 6.85 37.16 0.25 0.78 16 28 F -0.22 -2.31 17.24 2.25 0.04 -2.27 16 29 C 0.05 0.57 5.84 -1.90 -0.01 0.56 16 30 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 1.48 7.34 -51.93 -0.38 1.10 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.44 6.95 -51.93 -0.36 1.08 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.08 0.96 6.91 -51.93 -0.36 0.60 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 LS Contribution 408.99 15.07 6.16 6.16 Total: -1.00 -33.18 408.99 -9.99 -43.17 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -8.55 Total: -1.80 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.50 Total: -4.53 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.25 Total: -51.96 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.38 Total: -4.97 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.18 -9.99 -43.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649094371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.650 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds