Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99807 * 2 1 4 4 C 1.53006 * 109.47031 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47167 * 184.39143 * 4 3 2 6 6 C 1.36746 * 127.13452 * 272.30312 * 5 4 3 7 7 C 1.50697 * 126.34674 * 359.96811 * 6 5 4 8 8 H 1.08999 * 109.47371 * 0.28657 * 7 6 5 9 9 C 1.53001 * 109.47033 * 120.28510 * 7 6 5 10 10 C 1.53002 * 109.46987 * 240.28299 * 7 6 5 11 11 C 1.50700 * 109.46971 * 174.99969 * 10 7 6 12 12 H 1.07997 * 120.00330 * 0.02562 * 11 10 7 13 13 C 1.37874 * 119.99984 * 180.02562 * 11 10 7 14 14 N 1.31520 * 120.00116 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00436 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46966 * 89.99837 * 15 13 11 17 17 H 1.48494 * 109.47543 * 210.00383 * 15 13 11 18 18 H 1.48504 * 109.46849 * 330.00186 * 15 13 11 19 19 N 1.30301 * 107.30274 * 180.22656 * 6 5 4 20 20 N 1.28524 * 110.05438 * 359.77615 * 19 6 5 21 21 C 1.31216 * 109.86203 * 0.02562 * 20 19 6 22 22 N 1.38578 * 126.47443 * 179.97438 * 21 20 19 23 23 C 1.47900 * 111.00076 * 36.01173 * 22 21 20 24 24 C 1.53996 * 107.05732 * 214.15704 * 23 22 21 25 25 C 1.54595 * 105.14065 * 1.22186 * 24 23 22 26 26 H 1.09004 * 110.72516 * 263.60225 * 25 24 23 27 27 C 1.53002 * 110.72611 * 140.49427 * 25 24 23 28 28 F 1.39894 * 109.47192 * 181.45509 * 27 25 24 29 29 C 1.48527 * 110.99953 * 278.61160 * 22 21 20 30 30 H 1.09008 * 109.46812 * 59.99762 * 1 2 3 31 31 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47168 * 300.00327 * 1 2 3 33 33 H 1.09005 * 109.47374 * 60.00041 * 3 2 1 34 34 H 1.08998 * 109.47363 * 299.99421 * 3 2 1 35 35 H 1.09001 * 109.46952 * 64.38745 * 4 3 2 36 36 H 1.08997 * 109.46713 * 304.39150 * 4 3 2 37 37 H 1.08997 * 109.47247 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.47486 * 300.00027 * 9 7 6 39 39 H 1.08999 * 109.46922 * 59.99872 * 9 7 6 40 40 H 1.08995 * 109.47154 * 295.00096 * 10 7 6 41 41 H 1.08997 * 109.46754 * 55.00530 * 10 7 6 42 42 H 0.97000 * 120.00461 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.91685 * 333.50477 * 23 22 21 44 44 H 1.08993 * 109.91975 * 94.60512 * 23 22 21 45 45 H 1.08997 * 110.30927 * 120.13705 * 24 23 22 46 46 H 1.08995 * 110.31032 * 242.20629 * 24 23 22 47 47 H 1.08998 * 109.46799 * 301.45749 * 27 25 24 48 48 H 1.08999 * 109.47263 * 61.45338 * 27 25 24 49 49 H 1.08999 * 110.67230 * 278.15567 * 29 22 21 50 50 H 1.08999 * 110.66903 * 41.28803 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1310 2.5189 0.1064 6 6 4.4335 3.3716 -0.9190 7 6 4.2162 3.1145 -2.3879 8 1 3.7678 2.1301 -2.5221 9 6 3.2820 4.1827 -2.9598 10 6 5.5593 3.1672 -3.1190 11 6 5.3596 2.7898 -4.5642 12 1 4.3734 2.5379 -4.9253 13 6 6.4359 2.7659 -5.4255 14 7 7.6370 3.0721 -4.9857 15 14 6.1885 2.2988 -7.2171 16 1 5.8971 3.5194 -8.0112 17 1 7.4214 1.6537 -7.7354 18 1 5.0499 1.3520 -7.3290 19 7 4.9496 4.4451 -0.3909 20 7 4.9891 4.3316 0.8887 21 6 4.4967 3.1698 1.2486 22 7 4.3755 2.6919 2.5437 23 6 4.0381 3.7841 3.4822 24 6 4.7323 3.4619 4.8186 25 6 5.5025 2.1454 4.5664 26 1 4.9210 1.2875 4.9042 27 6 6.8682 2.1765 5.2556 28 9 7.5550 0.9886 4.9833 29 6 5.6620 2.1271 3.0253 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8630 0.7130 -0.9258 36 1 3.8514 0.5775 0.8489 37 1 3.1252 3.9971 -4.0224 38 1 2.3252 4.1453 -2.4390 39 1 3.7304 5.1671 -2.8256 40 1 5.9657 4.1768 -3.0599 41 1 6.2539 2.4680 -2.6535 42 1 8.3942 3.0557 -5.5918 43 1 4.4041 4.7343 3.0933 44 1 2.9584 3.8320 3.6235 45 1 5.4247 4.2597 5.0871 46 1 3.9916 3.3237 5.6061 47 1 7.4443 3.0231 4.8822 48 1 6.7298 2.2777 6.3320 49 1 5.7935 1.1071 2.6643 50 1 6.4974 2.7559 2.7175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649094371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -38.483411 kcal Electronic energy + Delta-G solvation = -30769.403450 eV Core-core repulsion = 26553.604872 eV Total energy + Delta-G solvation = -4215.798578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -48.57089 -44.16334 -40.16157 -39.09568 -37.15656 -36.23244 -34.58852 -33.83912 -30.98800 -30.57928 -29.89340 -28.85617 -27.34273 -26.64696 -25.90308 -24.69751 -24.13820 -23.14022 -21.72865 -21.43296 -20.63369 -18.75081 -18.48898 -17.78490 -17.54805 -17.34810 -17.12877 -16.67175 -16.60047 -16.50545 -16.17714 -15.84973 -15.65301 -15.36885 -15.03169 -14.97660 -14.50826 -14.39242 -14.08497 -13.72105 -13.54483 -13.44124 -13.06607 -12.98088 -12.86881 -12.76588 -12.70312 -12.48405 -12.38334 -12.32159 -12.28455 -12.13846 -11.99615 -11.72574 -11.69089 -11.53072 -11.44122 -11.24584 -11.17341 -10.78079 -10.56077 -10.36094 -9.69892 -8.17089 -6.28953 0.57657 1.02994 1.43765 1.45182 1.55692 1.68886 2.43163 2.44310 2.87151 3.17151 3.22815 3.39455 3.48754 3.54186 3.63189 3.79103 3.86861 3.98996 4.07446 4.11485 4.18976 4.20061 4.29166 4.34143 4.37534 4.40864 4.46220 4.49668 4.52874 4.55698 4.62356 4.66660 4.75717 4.82010 4.84202 4.89865 4.97455 5.06022 5.07357 5.13476 5.17640 5.33220 5.42677 5.44010 5.47890 5.66330 5.82097 5.99674 6.09757 6.18979 6.86524 7.40402 7.63222 8.95413 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.003177 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.697682 B = 8810.333369 C =10218.473721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.065 3.935 4 C 0.112 3.888 5 N -0.464 5.464 6 C 0.209 3.791 7 C 0.007 3.993 8 H 0.092 0.908 9 C -0.117 4.117 10 C 0.051 3.949 11 C -0.529 4.529 12 H 0.077 0.923 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.966 3.034 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.255 1.255 19 N -0.322 5.322 20 N -0.344 5.344 21 C 0.336 3.664 22 N -0.436 5.436 23 C 0.040 3.960 24 C -0.108 4.108 25 C -0.111 4.111 26 H 0.111 0.889 27 C 0.066 3.934 28 F -0.236 7.236 29 C 0.044 3.956 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.043 0.957 40 H -0.008 1.008 41 H -0.022 1.022 42 H 0.262 0.738 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.078 0.922 48 H 0.114 0.886 49 H 0.084 0.916 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.884 -5.070 21.986 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.012 4.012 4 C -0.011 4.011 5 N -0.157 5.157 6 C -0.059 4.059 7 C -0.014 4.014 8 H 0.110 0.890 9 C -0.175 4.175 10 C 0.013 3.987 11 C -0.567 4.567 12 H 0.095 0.905 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.179 1.179 19 N -0.160 5.160 20 N -0.187 5.187 21 C -0.021 4.021 22 N -0.162 5.162 23 C -0.087 4.087 24 C -0.146 4.146 25 C -0.130 4.130 26 H 0.129 0.871 27 C 0.011 3.989 28 F -0.217 7.217 29 C -0.083 4.083 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.010 0.990 41 H -0.004 1.004 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.130 0.870 47 H 0.096 0.904 48 H 0.132 0.868 49 H 0.103 0.897 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.406 -4.287 22.039 26.150 hybrid contribution 0.559 -0.503 -1.349 1.545 sum -12.847 -4.790 20.689 24.820 Atomic orbital electron populations 1.22997 0.78506 1.04385 1.01024 1.87780 1.22179 1.26409 1.95645 1.22505 0.91484 0.85747 1.01502 1.21694 0.93473 0.79435 1.06467 1.46244 1.47283 1.16559 1.05625 1.25432 0.99454 0.87234 0.93810 1.19795 0.99176 1.00872 0.81568 0.89010 1.21587 0.97104 0.97151 1.01664 1.18846 0.90394 0.95012 0.94468 1.21562 0.94896 1.45786 0.94427 0.90523 1.26007 0.94793 0.95240 1.03849 1.70151 1.00270 1.50020 1.37256 0.85426 0.77863 0.78704 0.78943 1.19905 1.21417 1.17907 1.73965 1.19096 1.21944 1.01005 1.74399 1.20715 1.17556 1.06017 1.22813 1.00428 0.90180 0.88678 1.61746 1.30006 1.29748 0.94739 1.23052 1.02445 0.91845 0.91352 1.22379 1.00057 0.96078 0.96115 1.22671 0.97144 1.01252 0.91935 0.87072 1.22255 0.90550 0.83173 1.02903 1.92747 1.81829 1.51286 1.95886 1.23435 0.88246 1.00048 0.96603 0.93263 0.87617 0.92876 0.92097 0.92541 0.87940 0.86494 0.90560 0.91886 0.93821 0.98960 1.00401 0.92962 0.92784 0.88410 0.89307 0.87007 0.90418 0.86838 0.89728 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.73 10.70 -148.98 -1.59 -10.33 16 3 C 0.07 1.48 6.26 71.98 0.45 1.93 16 4 C 0.11 2.94 6.21 86.38 0.54 3.48 16 5 N -0.46 -15.54 2.81 -514.85 -1.45 -16.99 16 6 C 0.21 8.51 6.58 137.63 0.91 9.42 16 7 C 0.01 0.28 2.71 -11.54 -0.03 0.25 16 8 H 0.09 3.44 7.00 -2.39 -0.02 3.42 16 9 C -0.12 -4.34 8.99 71.98 0.65 -3.69 16 10 C 0.05 2.74 4.43 29.85 0.13 2.87 16 11 C -0.53 -29.04 8.41 25.60 0.22 -28.82 16 12 H 0.08 3.85 7.06 -2.91 -0.02 3.83 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 15 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 N -0.32 -14.60 12.18 -49.53 -0.60 -15.21 16 20 N -0.34 -13.89 11.06 -58.01 -0.64 -14.53 16 21 C 0.34 11.18 6.70 260.11 1.74 12.92 16 22 N -0.44 -10.72 5.31 -693.51 -3.68 -14.40 16 23 C 0.04 0.77 6.63 86.45 0.57 1.34 16 24 C -0.11 -1.21 6.51 31.47 0.20 -1.01 16 25 C -0.11 -1.51 3.41 -9.59 -0.03 -1.55 16 26 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 27 C 0.07 0.83 6.85 71.98 0.49 1.33 16 28 F -0.24 -4.79 17.24 44.97 0.78 -4.01 16 29 C 0.04 0.99 5.84 86.65 0.51 1.49 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 2.80 7.34 -2.39 -0.02 2.78 16 36 H 0.12 2.77 8.14 -2.39 -0.02 2.76 16 37 H 0.08 2.80 6.95 -2.39 -0.02 2.79 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.05 1.33 6.91 -2.38 -0.02 1.32 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.09 0.85 7.85 -2.39 -0.02 0.83 16 46 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.08 0.98 8.13 -2.39 -0.02 0.97 16 48 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.04 1.09 7.90 -2.39 -0.02 1.07 16 Total: -1.00 -76.04 408.99 4.08 -71.95 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.91 Total: 13.69 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 8.05 Total: 2.00 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -6.09 Total: -118.99 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.59 Total: -10.33 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.78 Total: -4.01 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.04 4.08 -71.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649094371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.467 kcal (2) G-P(sol) polarization free energy of solvation -76.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.18 seconds