Wall clock time and date at job start Sat Apr 11 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00119 * 2 1 4 4 C 1.52992 * 109.47277 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47189 * 174.31669 * 4 3 2 6 6 C 1.36457 * 127.13551 * 265.15710 * 5 4 3 7 7 N 1.38581 * 126.47165 * 0.02562 * 6 5 4 8 8 C 1.46848 * 110.99995 * 80.12180 * 7 6 5 9 9 C 1.53037 * 109.52561 * 185.83914 * 8 7 6 10 10 C 1.53124 * 109.27614 * 300.82040 * 9 8 7 11 11 F 1.39895 * 109.52186 * 177.56026 * 10 9 8 12 12 C 1.53116 * 109.15952 * 57.65407 * 10 9 8 13 13 C 1.46842 * 110.99969 * 204.32853 * 7 6 5 14 14 N 1.31221 * 107.05409 * 179.97438 * 6 5 4 15 15 N 1.28531 * 109.85613 * 359.72985 * 14 6 5 16 16 C 1.30289 * 110.05721 * 0.45125 * 15 14 6 17 17 C 1.50702 * 126.35036 * 179.82044 * 16 15 14 18 18 C 1.53004 * 109.47367 * 243.35541 * 17 16 15 19 19 C 1.52999 * 109.47095 * 123.35148 * 17 16 15 20 20 C 1.50701 * 109.46540 * 3.35574 * 17 16 15 21 21 H 1.07998 * 120.00244 * 359.97438 * 20 17 16 22 22 C 1.37879 * 119.99624 * 180.27423 * 20 17 16 23 23 N 1.31516 * 120.00149 * 359.72719 * 22 20 17 24 24 Si 1.86794 * 120.00196 * 179.72196 * 22 20 17 25 25 H 1.48499 * 109.47041 * 89.99740 * 24 22 20 26 26 H 1.48495 * 109.47550 * 210.00320 * 24 22 20 27 27 H 1.48507 * 109.46960 * 330.00291 * 24 22 20 28 28 H 1.08993 * 109.46912 * 299.99456 * 1 2 3 29 29 H 1.08997 * 109.47348 * 60.00228 * 1 2 3 30 30 H 1.09007 * 109.46604 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46939 * 59.99697 * 3 2 1 32 32 H 1.09000 * 109.46883 * 300.00373 * 3 2 1 33 33 H 1.09000 * 109.47623 * 54.31728 * 4 3 2 34 34 H 1.09003 * 109.47306 * 294.31157 * 4 3 2 35 35 H 1.09001 * 109.46581 * 305.85271 * 8 7 6 36 36 H 1.08997 * 109.46667 * 65.82004 * 8 7 6 37 37 H 1.09001 * 109.50736 * 180.87992 * 9 8 7 38 38 H 1.08996 * 109.50215 * 60.75671 * 9 8 7 39 39 H 1.08997 * 109.52193 * 297.74786 * 10 9 8 40 40 H 1.09002 * 109.50017 * 182.40656 * 12 10 9 41 41 H 1.08997 * 109.50461 * 62.28912 * 12 10 9 42 42 H 1.09004 * 109.46615 * 294.17792 * 13 7 6 43 43 H 1.08996 * 109.46382 * 54.14765 * 13 7 6 44 44 H 1.08997 * 109.46817 * 175.15731 * 18 17 16 45 45 H 1.09000 * 109.46791 * 295.15816 * 18 17 16 46 46 H 1.09005 * 109.46823 * 55.15247 * 18 17 16 47 47 H 1.08992 * 109.47426 * 324.44271 * 19 17 16 48 48 H 1.09007 * 109.46817 * 84.43861 * 19 17 16 49 49 H 1.09001 * 109.47215 * 204.44019 * 19 17 16 50 50 H 0.96997 * 120.00170 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1307 2.5163 -0.1374 6 6 4.5404 3.1211 -1.2900 7 7 4.4727 2.5898 -2.5681 8 6 3.1203 2.7262 -3.1238 9 6 3.0451 2.0027 -4.4702 10 6 4.0742 2.6092 -5.4282 11 9 4.0485 1.9151 -6.6425 12 6 5.4682 2.4978 -4.8044 13 6 5.4730 3.2070 -3.4483 14 7 5.0096 4.3011 -0.9596 15 7 4.9135 4.4691 0.3110 16 6 4.3905 3.4113 0.8633 17 6 4.1166 3.2132 2.3319 18 6 4.9654 2.0537 2.8572 19 6 2.6343 2.8934 2.5356 20 6 4.4666 4.4723 3.0823 21 1 4.8495 5.3300 2.5492 22 6 4.3038 4.5273 4.4503 23 7 3.8381 3.4827 5.0997 24 14 4.7450 6.0852 5.3816 25 1 3.5561 6.9721 5.4540 26 1 5.1842 5.7331 6.7557 27 1 5.8454 6.7893 4.6754 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8500 0.5586 -0.8356 34 1 3.8646 0.7340 0.9357 35 1 2.3986 2.2872 -2.4349 36 1 2.8907 3.7822 -3.2656 37 1 2.0456 2.1173 -4.8897 38 1 3.2610 0.9440 -4.3270 39 1 3.8358 3.6585 -5.6022 40 1 6.1998 2.9663 -5.4627 41 1 5.7222 1.4469 -4.6665 42 1 5.2325 4.2608 -3.5887 43 1 6.4603 3.1172 -2.9951 44 1 4.8325 1.9655 3.9354 45 1 4.6528 1.1272 2.3756 46 1 6.0157 2.2424 2.6347 47 1 2.0391 3.4553 1.8160 48 1 2.4694 1.8259 2.3888 49 1 2.3385 3.1710 3.5473 50 1 3.7233 3.5215 6.0620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650409871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:35 Heat of formation + Delta-G solvation = -17.244519 kcal Electronic energy + Delta-G solvation = -32034.568390 eV Core-core repulsion = 27819.690799 eV Total energy + Delta-G solvation = -4214.877591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.62607 -43.99521 -39.94078 -39.15974 -37.61029 -36.04148 -34.22200 -32.99092 -32.17156 -30.96535 -29.63564 -27.88835 -27.37724 -27.11661 -25.35070 -24.66149 -24.57787 -23.29950 -22.26584 -20.99884 -20.79665 -18.77631 -18.06244 -17.64465 -17.33785 -17.20364 -16.93772 -16.82172 -16.71447 -16.14827 -16.07774 -16.00267 -15.64044 -15.30271 -14.96958 -14.79959 -14.40551 -13.85840 -13.70457 -13.63023 -13.44448 -13.32044 -13.23433 -13.13791 -12.89826 -12.75788 -12.72836 -12.51197 -12.41257 -12.24631 -12.18971 -12.03238 -11.85772 -11.82008 -11.59857 -11.44181 -11.36124 -11.14285 -10.75831 -10.66250 -10.45638 -10.29091 -9.38851 -8.04718 -6.16511 0.81400 1.18375 1.44128 1.47079 1.57859 1.93849 2.40913 2.48271 2.96858 3.21327 3.40350 3.44856 3.51605 3.56364 3.71175 3.84772 3.89690 3.96559 4.03396 4.15380 4.19987 4.26319 4.33020 4.40272 4.45160 4.50928 4.55389 4.60361 4.64881 4.71776 4.75227 4.76391 4.84340 4.85409 4.91341 4.92400 4.97467 5.01559 5.16075 5.23951 5.25752 5.41805 5.53961 5.63294 5.77845 5.97639 6.00660 6.07186 6.26083 6.39503 6.87958 7.49476 7.91732 8.96084 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.003641 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.315551 B = 7688.995898 C = 9219.175347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.041 3.959 4 C 0.111 3.889 5 N -0.468 5.468 6 C 0.336 3.664 7 N -0.451 5.451 8 C 0.059 3.941 9 C -0.130 4.130 10 C 0.089 3.911 11 F -0.220 7.220 12 C -0.132 4.132 13 C 0.076 3.924 14 N -0.353 5.353 15 N -0.326 5.326 16 C 0.230 3.770 17 C 0.143 3.857 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.512 4.512 21 H 0.052 0.948 22 C 0.031 3.969 23 N -0.900 5.900 24 Si 0.945 3.055 25 H -0.278 1.278 26 H -0.279 1.279 27 H -0.282 1.282 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.016 0.984 47 H 0.021 0.979 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -8.743 -17.509 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.037 4.037 4 C -0.012 4.012 5 N -0.163 5.163 6 C -0.021 4.021 7 N -0.177 5.177 8 C -0.068 4.068 9 C -0.168 4.168 10 C 0.052 3.948 11 F -0.201 7.201 12 C -0.170 4.170 13 C -0.051 4.051 14 N -0.197 5.197 15 N -0.163 5.163 16 C -0.039 4.039 17 C 0.140 3.860 18 C -0.182 4.182 19 C -0.175 4.175 20 C -0.551 4.551 21 H 0.070 0.930 22 C -0.168 4.168 23 N -0.539 5.539 24 Si 0.772 3.228 25 H -0.204 1.204 26 H -0.204 1.204 27 H -0.208 1.208 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.040 0.960 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.300 -8.114 -17.503 20.007 hybrid contribution -0.440 0.757 0.883 1.244 sum -5.740 -7.357 -16.619 19.060 Atomic orbital electron populations 1.23001 0.78761 1.04435 1.00871 1.87764 1.21931 1.26189 1.95629 1.23093 0.92419 0.86085 1.02089 1.21755 0.92814 0.80129 1.06496 1.46165 1.48138 1.16154 1.05796 1.22593 1.01981 0.89568 0.87972 1.58760 1.07868 1.54873 0.96155 1.22317 0.87229 1.00279 0.96945 1.22138 1.00777 1.01572 0.92297 1.21713 0.96724 0.96501 0.79829 1.92801 1.97629 1.82124 1.47566 1.22172 0.97089 1.03278 0.94437 1.21957 0.94493 0.96947 0.91669 1.74469 1.24090 1.13609 1.07528 1.74009 1.19676 1.22547 1.00110 1.25845 0.97848 0.85685 0.94524 1.16842 0.94100 0.95995 0.79104 1.21833 0.96972 0.95345 1.04069 1.21921 0.95261 0.97993 1.02352 1.21180 1.43130 0.98591 0.92200 0.92996 1.25341 0.95065 0.98645 0.97782 1.69879 1.45899 1.29524 1.08579 0.85748 0.78347 0.80756 0.77910 1.20378 1.20440 1.20751 0.93840 0.92757 0.87311 0.91552 0.92498 0.86187 0.87898 0.89831 0.93425 0.87780 0.89274 0.88642 0.87951 0.89540 0.92850 0.90435 0.89918 0.94109 0.96457 0.95991 0.93316 0.90902 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -9.48 10.70 -148.98 -1.59 -11.08 16 3 C 0.04 1.06 5.83 71.98 0.42 1.48 16 4 C 0.11 3.18 5.66 86.38 0.49 3.67 16 5 N -0.47 -16.82 2.81 -514.85 -1.45 -18.27 16 6 C 0.34 11.76 6.84 260.11 1.78 13.54 16 7 N -0.45 -11.53 4.65 -706.15 -3.28 -14.81 16 8 C 0.06 1.20 5.39 86.33 0.47 1.66 16 9 C -0.13 -1.90 5.83 30.65 0.18 -1.72 16 10 C 0.09 1.34 3.95 30.67 0.12 1.46 16 11 F -0.22 -4.07 17.09 44.97 0.77 -3.30 16 12 C -0.13 -2.09 5.83 30.65 0.18 -1.92 16 13 C 0.08 1.72 4.95 86.33 0.43 2.15 16 14 N -0.35 -15.17 11.51 -58.00 -0.67 -15.83 16 15 N -0.33 -16.12 10.99 -49.54 -0.54 -16.66 16 16 C 0.23 10.33 6.19 137.64 0.85 11.18 16 17 C 0.14 6.73 0.52 -53.67 -0.03 6.70 16 18 C -0.12 -5.59 8.10 71.98 0.58 -5.01 16 19 C -0.12 -5.07 6.77 71.98 0.49 -4.58 16 20 C -0.51 -27.83 7.91 25.60 0.20 -27.63 16 21 H 0.05 3.04 6.94 -2.91 -0.02 3.02 16 22 C 0.03 1.64 4.97 84.65 0.42 2.06 16 23 N -0.90 -46.87 9.46 21.45 0.20 -46.66 16 24 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.07 1.99 4.03 -2.39 -0.01 1.98 16 32 H 0.06 1.37 5.74 -2.39 -0.01 1.35 16 33 H 0.12 2.99 8.12 -2.39 -0.02 2.97 16 34 H 0.10 3.12 5.16 -2.39 -0.01 3.11 16 35 H 0.08 1.72 5.66 -2.39 -0.01 1.71 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.28 8.07 -2.38 -0.02 1.26 16 43 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 44 H 0.08 4.06 5.94 -2.39 -0.01 4.05 16 45 H 0.04 1.57 5.42 -2.39 -0.01 1.55 16 46 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.02 0.90 7.16 -2.39 -0.02 0.88 16 48 H 0.05 1.85 5.56 -2.38 -0.01 1.83 16 49 H 0.07 3.54 5.86 -2.39 -0.01 3.53 16 50 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -64.18 379.32 4.25 -59.93 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.96 Total: 16.46 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 7.83 Total: 4.73 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -5.74 Total: -112.24 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.59 Total: -11.08 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.77 Total: -3.30 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.18 4.25 -59.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650409871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.689 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds