Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99759 * 2 1 4 4 C 1.52998 * 109.47357 * 125.00055 * 3 2 1 5 5 C 1.53006 * 109.47455 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47290 * 179.97438 * 5 4 3 7 7 C 1.46846 * 110.99706 * 65.79084 * 6 5 4 8 8 C 1.53042 * 109.52111 * 185.83902 * 7 6 5 9 9 C 1.53118 * 109.27598 * 300.81810 * 8 7 6 10 10 C 1.53115 * 109.15859 * 57.65711 * 9 8 7 11 11 H 1.09002 * 109.53964 * 62.30752 * 10 9 8 12 12 C 1.53010 * 109.50146 * 182.39947 * 10 9 8 13 13 H 1.08997 * 109.46815 * 59.81049 * 12 10 9 14 14 C 1.53003 * 109.46752 * 179.80071 * 12 10 9 15 15 N 1.46496 * 109.47076 * 299.80130 * 12 10 9 16 16 C 1.34774 * 119.99544 * 155.00017 * 15 12 10 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 12 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 12 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47767 * 59.99657 * 24 22 20 26 26 H 1.48505 * 109.46944 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46958 * 299.99344 * 24 22 20 28 28 C 1.46846 * 110.99774 * 190.00056 * 6 5 4 29 29 H 1.08001 * 119.99638 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99824 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.00077 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47245 * 4.99633 * 3 2 1 33 33 H 1.09009 * 109.46829 * 244.99619 * 3 2 1 34 34 H 1.09001 * 109.47287 * 59.99604 * 4 3 2 35 35 H 1.09001 * 109.47015 * 299.99761 * 4 3 2 36 36 H 1.09001 * 109.47028 * 59.99652 * 5 4 3 37 37 H 1.09001 * 109.46983 * 299.99987 * 5 4 3 38 38 H 1.09002 * 109.46753 * 305.85061 * 7 6 5 39 39 H 1.09001 * 109.46759 * 65.82440 * 7 6 5 40 40 H 1.08992 * 109.50509 * 60.76255 * 8 7 6 41 41 H 1.09006 * 109.50279 * 180.88377 * 8 7 6 42 42 H 1.08996 * 109.52702 * 297.74840 * 9 8 7 43 43 H 1.08999 * 109.52076 * 177.56021 * 9 8 7 44 44 H 1.08997 * 109.46755 * 180.02562 * 14 12 10 45 45 H 1.08992 * 109.47534 * 300.00312 * 14 12 10 46 46 H 1.09005 * 109.46941 * 60.00853 * 14 12 10 47 47 H 0.96994 * 120.00700 * 335.00136 * 15 12 10 48 48 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 49 49 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 50 50 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 51 51 H 1.08991 * 109.46550 * 54.14616 * 28 6 5 52 52 H 1.09003 * 109.45455 * 294.16932 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8005 2.6580 1.1812 6 7 4.7328 2.6852 2.3161 7 6 5.7818 1.6695 2.1597 8 6 6.6456 1.6278 3.4224 9 6 7.2731 3.0056 3.6512 10 6 6.1610 4.0521 3.7623 11 1 5.5332 3.8268 4.6244 12 6 6.7813 5.4406 3.9314 13 1 7.4101 5.6650 3.0698 14 6 5.6695 6.4864 4.0374 15 7 7.5945 5.4671 5.1497 16 6 8.6095 6.3465 5.2633 17 8 8.8495 7.1161 4.3572 18 6 9.4464 6.3734 6.5163 19 16 10.7189 7.6517 6.3645 20 6 11.5243 7.4680 7.9209 21 1 11.1785 6.7240 8.6233 22 6 12.6024 8.2800 8.2446 23 7 13.0234 9.1871 7.3886 24 14 13.4566 8.0847 9.8942 25 1 13.9975 6.7067 10.0117 26 1 14.5694 9.0630 9.9943 27 1 12.4824 8.3290 10.9881 28 6 5.3113 4.0237 2.4899 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5067 1.0921 35 1 2.4772 1.2357 2.1130 36 1 3.0958 3.4848 1.2705 37 1 4.3583 2.7551 0.2498 38 1 5.3221 0.6939 2.0018 39 1 6.4052 1.9203 1.3014 40 1 6.0255 1.3635 4.2789 41 1 7.4337 0.8848 3.2998 42 1 7.9240 3.2533 2.8127 43 1 7.8544 2.9924 4.5732 44 1 6.1113 7.4755 4.1574 45 1 5.0644 6.4666 3.1310 46 1 5.0407 6.2620 4.8991 47 1 7.4024 4.8519 5.8746 48 1 8.8102 6.5936 7.3735 49 1 9.9219 5.4027 6.6566 50 1 13.7771 9.7544 7.6147 51 1 4.5099 4.7578 2.5718 52 1 5.9369 4.2633 1.6300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661984688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -41.596406 kcal Electronic energy + Delta-G solvation = -26836.088194 eV Core-core repulsion = 23154.075051 eV Total energy + Delta-G solvation = -3682.013143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.10825 -38.90028 -36.79127 -35.49924 -33.55182 -32.41714 -32.05904 -31.03806 -29.48291 -28.32643 -26.42107 -25.47538 -24.36879 -23.43653 -21.89862 -20.77902 -20.34628 -20.22649 -19.81530 -17.81327 -16.66305 -16.36785 -16.13685 -15.75572 -15.31583 -15.00675 -14.85063 -14.79221 -14.32667 -14.23424 -14.11765 -13.90739 -13.64529 -13.46570 -13.16593 -12.90778 -12.87869 -12.64704 -12.50479 -12.11002 -11.92707 -11.85919 -11.77519 -11.58538 -11.29815 -11.24952 -11.03300 -11.03010 -10.96276 -10.77996 -10.76514 -10.53341 -10.41785 -9.80687 -9.76398 -9.33233 -9.05022 -8.83728 -8.64058 -8.22160 -6.48306 -6.20324 -3.90698 1.84175 3.04357 3.14205 3.24317 3.28103 3.31205 3.50221 3.78452 4.21960 4.31108 4.41247 4.52420 4.57032 4.64245 4.76929 4.83212 4.91995 4.95993 5.07123 5.09544 5.14711 5.15407 5.18841 5.25859 5.28665 5.29544 5.37949 5.38927 5.44590 5.47433 5.54768 5.63578 5.64764 5.73327 5.73959 5.78039 5.80560 5.87730 5.91669 5.96448 6.07323 6.16499 6.18415 6.19136 6.27925 6.32715 6.70564 6.77612 6.79826 7.60455 7.77725 8.36254 8.67165 9.24892 10.87060 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.001620 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.517080 B =17282.575844 C =17668.507271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.111 4.111 5 C 0.055 3.945 6 N -0.537 5.537 7 C 0.052 3.948 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.089 4.089 11 H 0.084 0.916 12 C 0.149 3.851 13 H 0.085 0.915 14 C -0.165 4.165 15 N -0.732 5.732 16 C 0.533 3.467 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.063 3.937 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.397 0.603 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.269 0.731 51 H 0.080 0.920 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.871 -18.809 -12.600 32.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.149 4.149 5 C -0.073 4.073 6 N -0.262 5.262 7 C -0.076 4.076 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.108 4.108 11 H 0.102 0.898 12 C 0.044 3.956 13 H 0.103 0.897 14 C -0.223 4.223 15 N -0.386 5.386 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.065 4.065 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.231 0.769 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.099 0.901 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.587 -17.472 -13.742 31.690 hybrid contribution 0.622 -1.149 1.732 2.170 sum -21.965 -18.621 -12.010 31.200 Atomic orbital electron populations 1.23867 0.96007 1.01846 1.01609 1.22951 0.96029 0.98499 0.99507 1.20747 0.98256 0.95474 0.98779 1.21548 0.97699 0.97089 0.98563 1.22119 0.95099 0.98525 0.91554 1.61893 1.17669 1.05007 1.41584 1.22166 0.92437 0.95815 0.97170 1.21584 0.98538 0.97247 0.98026 1.21632 0.97236 0.94084 1.02529 1.21429 0.96563 0.93957 0.98844 0.89799 1.20834 0.92155 0.93777 0.88874 0.89660 1.22238 0.98324 1.00071 1.01703 1.46043 1.33516 1.39535 1.19489 1.20280 0.79547 0.79574 0.88673 1.90692 1.68755 1.39109 1.40731 1.23537 1.02521 1.06782 0.97590 1.85382 1.31773 1.41638 1.24561 1.22836 1.18970 1.23930 1.02707 0.91009 1.24982 0.96101 0.94471 0.97964 1.70010 1.25532 1.19792 1.34992 0.86234 0.78838 0.78134 0.82355 1.19953 1.20810 1.19940 1.22113 0.97684 0.90137 0.96577 0.88605 0.88598 0.87501 0.91407 0.91126 0.91796 0.90922 0.90718 0.94883 0.90627 0.94983 0.91092 0.91501 0.92020 0.91256 0.91712 0.91918 0.92470 0.76942 0.89300 0.89332 0.92150 0.90135 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.05 14.32 29.01 0.42 -0.63 16 2 C -0.15 -0.84 9.52 -36.03 -0.34 -1.18 16 3 C -0.09 -0.50 5.66 -27.89 -0.16 -0.66 16 4 C -0.11 -0.65 5.13 -26.73 -0.14 -0.79 16 5 C 0.05 0.37 4.96 -3.82 -0.02 0.35 16 6 N -0.54 -4.25 4.66 -234.67 -1.09 -5.34 16 7 C 0.05 0.40 5.29 -3.83 -0.02 0.37 16 8 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 9 C -0.12 -1.07 5.09 -26.61 -0.14 -1.21 16 10 C -0.09 -0.80 1.99 -90.54 -0.18 -0.98 16 11 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 12 C 0.15 1.73 2.16 -67.93 -0.15 1.58 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 14 C -0.17 -1.82 9.13 37.16 0.34 -1.48 16 15 N -0.73 -9.64 4.43 -53.80 -0.24 -9.88 16 16 C 0.53 9.86 7.81 -10.98 -0.09 9.78 16 17 O -0.52 -11.70 15.52 5.56 0.09 -11.61 16 18 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 28 C 0.06 0.53 4.36 -3.83 -0.02 0.51 16 29 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 30 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 31 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.07 0.35 7.79 -51.93 -0.40 -0.06 16 33 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 34 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.48 7.99 -51.93 -0.41 0.07 16 37 H 0.03 0.23 8.12 -51.93 -0.42 -0.20 16 38 H 0.08 0.51 6.21 -51.93 -0.32 0.19 16 39 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.66 7.55 -51.93 -0.39 0.27 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.57 6.45 -51.93 -0.34 0.24 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.40 4.18 8.41 -40.82 -0.34 3.83 16 48 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 49 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 50 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 51 H 0.08 0.64 6.35 -51.93 -0.33 0.31 16 52 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 422.59 15.07 6.37 6.37 Total: -1.00 -33.31 422.59 -11.17 -44.48 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -9.57 Total: 0.22 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.23 Total: -11.30 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.60 Total: -40.74 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.31 -11.17 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661984688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.884 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds