Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99466 * 2 1 4 4 C 1.52994 * 109.47054 * 125.00531 * 3 2 1 5 5 C 1.52996 * 109.47325 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47329 * 180.02562 * 5 4 3 7 7 C 1.46843 * 111.00022 * 65.79046 * 6 5 4 8 8 C 1.53039 * 109.52391 * 185.84211 * 7 6 5 9 9 C 1.53124 * 109.27498 * 300.81655 * 8 7 6 10 10 C 1.53126 * 109.15878 * 57.65601 * 9 8 7 11 11 H 1.09000 * 109.50113 * 62.32829 * 10 9 8 12 12 C 1.52999 * 109.50042 * 182.40051 * 10 9 8 13 13 H 1.09003 * 109.46926 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46974 * 60.00131 * 12 10 9 15 15 N 1.46497 * 109.47766 * 300.00010 * 12 10 9 16 16 C 1.34772 * 120.00587 * 205.00046 * 15 12 10 17 17 O 1.21288 * 119.99446 * 0.02562 * 16 15 12 18 18 C 1.50691 * 120.00411 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.47402 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00114 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00252 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00149 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00013 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99737 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47258 * 89.99470 * 24 22 20 26 26 H 1.48500 * 109.46863 * 210.00079 * 24 22 20 27 27 H 1.48500 * 109.47113 * 329.99621 * 24 22 20 28 28 C 1.46854 * 111.00034 * 189.99924 * 6 5 4 29 29 H 1.07999 * 120.00652 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99319 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00652 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46813 * 5.00504 * 3 2 1 33 33 H 1.09005 * 109.47107 * 245.00449 * 3 2 1 34 34 H 1.09000 * 109.47421 * 59.99510 * 4 3 2 35 35 H 1.09005 * 109.47096 * 299.99925 * 4 3 2 36 36 H 1.09000 * 109.47288 * 59.99913 * 5 4 3 37 37 H 1.09005 * 109.46879 * 299.99944 * 5 4 3 38 38 H 1.09001 * 109.45906 * 305.85080 * 7 6 5 39 39 H 1.08994 * 109.46526 * 65.83386 * 7 6 5 40 40 H 1.08997 * 109.50468 * 180.87980 * 8 7 6 41 41 H 1.09004 * 109.50358 * 60.75551 * 8 7 6 42 42 H 1.08998 * 109.52745 * 297.74929 * 9 8 7 43 43 H 1.08999 * 109.52030 * 177.55385 * 9 8 7 44 44 H 1.09003 * 109.47000 * 59.99912 * 14 12 10 45 45 H 1.09001 * 109.47226 * 179.97438 * 14 12 10 46 46 H 1.09003 * 109.47470 * 299.99862 * 14 12 10 47 47 H 0.97001 * 119.99514 * 25.00141 * 15 12 10 48 48 H 1.09001 * 109.47152 * 300.00337 * 18 16 15 49 49 H 1.09003 * 109.47091 * 59.99977 * 18 16 15 50 50 H 0.96996 * 119.99811 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.45788 * 54.14266 * 28 6 5 52 52 H 1.09003 * 109.45264 * 294.17148 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.7994 2.6585 1.1819 6 7 4.7328 2.6852 2.3160 7 6 5.7824 1.6705 2.1577 8 6 6.6472 1.6280 3.4196 9 6 7.2740 3.0060 3.6495 10 6 6.1612 4.0517 3.7626 11 1 5.5348 3.8246 4.6253 12 6 6.7806 5.4404 3.9326 13 1 5.9880 6.1844 4.0127 14 6 7.6582 5.7592 2.7206 15 7 7.5985 5.4649 5.1477 16 6 7.8273 6.6315 5.7827 17 8 7.3556 7.6609 5.3483 18 6 8.6682 6.6566 7.0329 19 16 8.7890 8.3557 7.6448 20 6 9.7962 8.0978 9.0674 21 1 10.1362 7.1031 9.3152 22 6 10.1536 9.1732 9.8690 23 7 10.9056 8.9804 10.9319 24 14 9.5662 10.8937 9.4399 25 1 8.2629 11.1517 10.1034 26 1 10.5650 11.8885 9.9069 27 1 9.4038 11.0087 7.9683 28 6 5.3105 4.0239 2.4908 29 1 -0.5401 0.9352 0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3584 2.1316 0.0897 33 1 2.6212 1.4028 -0.9315 34 1 3.7400 0.5067 1.0919 35 1 2.4773 1.2356 2.1130 36 1 3.0942 3.4848 1.2718 37 1 4.3571 2.7566 0.2505 38 1 5.3232 0.6947 1.9992 39 1 6.4049 1.9227 1.2994 40 1 7.4356 0.8857 3.2956 41 1 6.0279 1.3624 4.2765 42 1 7.9240 3.2551 2.8107 43 1 7.8559 2.9923 4.5710 44 1 7.0495 5.7410 1.8165 45 1 8.0991 6.7487 2.8415 46 1 8.4507 5.0152 2.6400 47 1 7.9755 4.6415 5.4953 48 1 8.2060 6.0285 7.7944 49 1 9.6658 6.2795 6.8074 50 1 11.1557 9.7319 11.4919 51 1 4.5086 4.7574 2.5741 52 1 5.9352 4.2649 1.6307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661984689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -58.853785 kcal Electronic energy + Delta-G solvation = -26893.825794 eV Core-core repulsion = 23211.064314 eV Total energy + Delta-G solvation = -3682.761479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.21516 -40.02784 -37.61341 -36.29430 -34.67339 -34.25636 -33.04674 -31.67384 -30.64817 -29.34803 -27.84946 -27.00659 -25.46825 -24.15703 -22.98082 -21.73479 -21.36846 -20.62710 -20.14323 -19.80485 -17.96175 -17.49726 -17.09947 -16.76564 -16.52788 -16.40985 -16.07061 -15.73653 -15.62136 -15.42432 -15.00524 -14.86689 -14.74104 -14.56254 -14.31543 -14.18402 -13.87790 -13.41544 -13.34919 -13.28279 -13.13902 -13.01003 -12.90769 -12.68645 -12.58757 -12.34418 -12.30771 -11.92259 -11.86947 -11.77630 -11.66671 -11.36023 -11.23537 -11.17003 -11.06743 -10.94033 -10.53338 -10.18775 -10.11923 -9.21359 -8.99233 -8.51462 -6.22111 0.99309 1.31472 1.42789 1.46955 1.56142 1.58713 2.21558 2.26338 2.71707 2.86919 2.93411 3.68022 3.74165 3.85660 3.89130 3.93572 4.09065 4.19370 4.22219 4.25870 4.31592 4.32553 4.42162 4.46976 4.48996 4.49427 4.56698 4.62528 4.67799 4.70798 4.78098 4.82363 4.86952 4.94352 4.99062 5.04730 5.06742 5.09000 5.16099 5.28534 5.29401 5.33235 5.40755 5.51406 5.54815 5.70828 5.78284 5.91732 6.11450 6.16944 6.20422 6.49142 6.93860 7.21994 8.60979 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.001672 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.438567 B =16742.763845 C =17002.538017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.092 4.092 4 C -0.103 4.103 5 C 0.056 3.944 6 N -0.547 5.547 7 C 0.053 3.947 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.078 4.078 11 H 0.077 0.923 12 C 0.150 3.850 13 H 0.067 0.933 14 C -0.161 4.161 15 N -0.707 5.707 16 C 0.536 3.464 17 O -0.562 6.562 18 C -0.112 4.112 19 S -0.175 6.175 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.047 3.953 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.237 1.237 28 C 0.065 3.935 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.073 0.927 47 H 0.413 0.587 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.277 0.723 51 H 0.072 0.928 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.134 -21.248 -25.057 36.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.178 4.178 3 C -0.129 4.129 4 C -0.141 4.141 5 C -0.071 4.071 6 N -0.272 5.272 7 C -0.075 4.075 8 C -0.151 4.151 9 C -0.158 4.158 10 C -0.097 4.097 11 H 0.095 0.905 12 C 0.045 3.955 13 H 0.085 0.915 14 C -0.219 4.219 15 N -0.361 5.361 16 C 0.322 3.678 17 O -0.440 6.440 18 C -0.263 4.263 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.080 0.920 22 C -0.158 4.158 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.161 1.161 28 C -0.063 4.063 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.251 0.749 48 H 0.130 0.870 49 H 0.131 0.869 50 H 0.086 0.914 51 H 0.090 0.910 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.082 -19.610 -25.206 35.757 hybrid contribution 1.217 -0.507 0.520 1.417 sum -14.865 -20.116 -24.687 35.144 Atomic orbital electron populations 1.24012 0.96195 1.02327 1.01403 1.23069 0.96203 0.98835 0.99698 1.20717 0.98129 0.95391 0.98700 1.21454 0.97612 0.96775 0.98237 1.22126 0.94912 0.98855 0.91229 1.61852 1.18036 1.04854 1.42439 1.22184 0.92277 0.95957 0.97058 1.21558 0.98819 0.96820 0.97910 1.21740 0.97037 0.94413 1.02578 1.21278 0.96880 0.92452 0.99109 0.90459 1.20913 0.92942 0.97853 0.83770 0.91486 1.22246 1.00652 1.01288 0.97738 1.45879 1.53447 1.09065 1.27722 1.19935 0.79871 0.83947 0.84082 1.90684 1.51710 1.34109 1.67511 1.23281 1.03827 1.00781 0.98427 1.84702 1.67949 1.10097 1.32110 1.22472 1.36103 0.97877 1.11296 0.91985 1.25548 0.93777 1.02832 0.93690 1.70014 1.36155 1.33774 1.15530 0.85872 0.79324 0.79696 0.81509 1.18724 1.18278 1.16131 1.22052 0.97450 0.90528 0.96292 0.88479 0.87936 0.86960 0.91526 0.90570 0.91454 0.92124 0.90905 0.94467 0.89930 0.94822 0.90166 0.91704 0.91006 0.91179 0.90082 0.94632 0.90792 0.74902 0.86981 0.86888 0.91372 0.90966 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 14.32 67.78 0.97 -1.00 16 2 C -0.16 -1.56 9.52 25.65 0.24 -1.31 16 3 C -0.09 -0.82 5.66 29.85 0.17 -0.66 16 4 C -0.10 -1.03 5.12 30.59 0.16 -0.88 16 5 C 0.06 0.63 4.96 86.30 0.43 1.06 16 6 N -0.55 -7.28 4.66 -896.37 -4.17 -11.45 16 7 C 0.05 0.59 5.29 86.33 0.46 1.05 16 8 C -0.11 -1.24 6.09 30.65 0.19 -1.06 16 9 C -0.12 -1.46 4.77 30.68 0.15 -1.31 16 10 C -0.08 -1.19 2.34 -10.74 -0.03 -1.21 16 11 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 12 C 0.15 3.10 2.41 44.99 0.11 3.20 16 13 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 14 C -0.16 -3.09 8.78 71.98 0.63 -2.46 16 15 N -0.71 -16.65 5.00 -442.55 -2.21 -18.86 16 16 C 0.54 18.41 7.81 87.65 0.68 19.09 16 17 O -0.56 -23.99 15.53 -3.05 -0.05 -24.04 16 18 C -0.11 -4.24 6.16 71.23 0.44 -3.80 16 19 S -0.18 -8.90 18.55 -56.49 -1.05 -9.95 16 20 C -0.53 -31.00 10.04 67.96 0.68 -30.32 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.77 5.50 84.86 0.47 3.23 16 23 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 24 Si 0.91 45.22 27.74 68.60 1.90 47.12 16 25 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 28 C 0.07 0.92 4.41 86.32 0.38 1.30 16 29 H 0.10 0.89 7.84 -2.91 -0.02 0.87 16 30 H 0.10 0.83 8.06 -2.91 -0.02 0.80 16 31 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.07 0.62 7.79 -2.39 -0.02 0.60 16 33 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.07 0.63 6.43 -2.39 -0.02 0.61 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 0.85 7.99 -2.39 -0.02 0.83 16 37 H 0.04 0.39 8.12 -2.38 -0.02 0.37 16 38 H 0.08 0.82 6.21 -2.39 -0.01 0.81 16 39 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.07 0.84 6.32 -2.39 -0.02 0.83 16 43 H 0.07 0.80 6.60 -2.39 -0.02 0.78 16 44 H 0.08 1.26 6.41 -2.39 -0.02 1.24 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 1.20 6.38 -2.39 -0.02 1.18 16 47 H 0.41 7.31 6.91 -92.71 -0.64 6.67 16 48 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 49 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 50 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.07 1.09 8.02 -2.39 -0.02 1.07 16 52 H 0.05 0.60 6.38 -2.39 -0.02 0.59 16 Total: -1.00 -71.59 414.29 1.05 -70.53 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.20 Total: 17.39 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 6.13 Total: -15.07 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -6.08 Total: -85.99 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -71.59 1.05 -70.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661984689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.681 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds