Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99729 * 2 1 4 4 C 1.53001 * 109.47257 * 293.95225 * 3 2 1 5 5 N 1.46501 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.34769 * 120.00000 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00208 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00076 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.47414 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00056 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99983 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00091 * 179.97438 * 10 9 8 13 13 N 1.31636 * 120.00113 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00023 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47292 * 89.99660 * 14 12 10 16 16 H 1.48499 * 109.47135 * 210.00042 * 14 12 10 17 17 H 1.48499 * 109.46602 * 329.99419 * 14 12 10 18 18 C 1.46892 * 111.00237 * 123.95192 * 2 1 3 19 19 C 1.53002 * 109.46956 * 66.04847 * 18 2 1 20 20 C 1.52947 * 109.41008 * 184.99886 * 19 18 2 21 21 C 1.53184 * 109.44835 * 176.90834 * 20 19 18 22 22 C 1.53146 * 108.88301 * 56.56851 * 21 20 19 23 23 C 1.52846 * 117.67745 * 91.48946 * 22 21 20 24 24 C 1.52805 * 117.74988 * 160.37048 * 22 21 20 25 25 C 1.53153 * 115.00626 * 306.05849 * 22 21 20 26 26 C 1.52934 * 109.41198 * 64.64041 * 19 18 2 27 27 H 1.09005 * 109.46808 * 296.04542 * 1 2 3 28 28 H 1.09003 * 109.47495 * 56.04458 * 1 2 3 29 29 H 1.08999 * 109.47128 * 176.04687 * 1 2 3 30 30 H 1.09002 * 109.47693 * 53.95288 * 3 2 1 31 31 H 1.09000 * 109.47275 * 173.95712 * 3 2 1 32 32 H 1.08999 * 109.47400 * 300.00135 * 4 3 2 33 33 H 1.09004 * 109.47066 * 60.00112 * 4 3 2 34 34 H 0.96998 * 119.99880 * 0.02562 * 5 4 3 35 35 H 1.08999 * 109.46582 * 299.99696 * 8 6 5 36 36 H 1.09004 * 109.47207 * 59.99259 * 8 6 5 37 37 H 0.96998 * 119.99912 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47494 * 306.04361 * 18 2 1 39 39 H 1.09005 * 109.47212 * 186.04369 * 18 2 1 40 40 H 1.08999 * 109.35344 * 304.81441 * 19 18 2 41 41 H 1.08998 * 109.47963 * 296.89702 * 20 19 18 42 42 H 1.09002 * 109.47582 * 56.92060 * 20 19 18 43 43 H 1.08995 * 109.57119 * 176.39071 * 21 20 19 44 44 H 1.09004 * 109.56622 * 296.74630 * 21 20 19 45 45 H 1.08990 * 117.50691 * 215.22036 * 23 22 21 46 46 H 1.09003 * 117.50162 * 0.28495 * 23 22 21 47 47 H 1.09002 * 117.50024 * 359.85790 * 24 22 21 48 48 H 1.09007 * 117.49910 * 144.88817 * 24 22 21 49 49 H 1.08998 * 109.57351 * 294.11915 * 25 22 21 50 50 H 1.09004 * 109.56945 * 173.75509 * 25 22 21 51 51 H 1.08996 * 109.47798 * 303.08293 * 26 19 18 52 52 H 1.09004 * 109.47480 * 63.09767 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 7 2.1569 3.4250 -1.3186 6 6 1.9556 4.2240 -2.3850 7 8 1.3399 3.8108 -3.3448 8 6 2.4966 5.6306 -2.3856 9 16 2.0659 6.4422 -3.9450 10 6 2.7992 8.0223 -3.6804 11 1 3.3189 8.2285 -2.7564 12 6 2.7098 9.0017 -4.6598 13 7 3.2581 10.1820 -4.4623 14 14 1.8115 8.6448 -6.2583 15 1 0.3794 9.0097 -6.1134 16 1 2.4170 9.4422 -7.3550 17 1 1.9242 7.1989 -6.5772 18 6 1.9955 -0.7659 1.1375 19 6 1.6315 -2.2426 0.9703 20 6 2.0705 -3.0182 2.2132 21 6 1.6379 -4.4816 2.0804 22 6 2.2275 -5.0575 0.7896 23 6 3.5906 -5.7436 0.8759 24 6 2.3245 -6.5776 0.6680 25 6 1.9119 -4.2593 -0.4788 26 6 2.3359 -2.8027 -0.2662 27 1 -0.3633 0.4513 0.9234 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5611 1.9275 0.8309 31 1 3.0797 1.3445 0.1082 32 1 2.0658 1.5016 -2.1492 33 1 0.5471 2.0845 -1.4265 34 1 2.6496 3.7554 -0.5512 35 1 2.0633 6.1868 -1.5543 36 1 3.5810 5.6029 -2.2781 37 1 3.1953 10.8666 -5.1466 38 1 1.5612 -0.3871 2.0628 39 1 3.0798 -0.6610 1.1755 40 1 0.5527 -2.3369 0.8467 41 1 3.1551 -2.9672 2.3093 42 1 1.6063 -2.5809 3.0972 43 1 2.0053 -5.0500 2.9349 44 1 0.5501 -4.5387 2.0422 45 1 4.2649 -5.6321 0.0270 46 1 4.0692 -5.7909 1.8541 47 1 1.9703 -7.1735 1.5092 48 1 2.1659 -7.0148 -0.3179 49 1 0.8415 -4.3022 -0.6804 50 1 2.4610 -4.6801 -1.3211 51 1 2.0600 -2.2128 -1.1402 52 1 3.4153 -2.7558 -0.1221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663146277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -31.997172 kcal Electronic energy + Delta-G solvation = -26522.116283 eV Core-core repulsion = 22840.519394 eV Total energy + Delta-G solvation = -3681.596889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 4.54 seconds Orbital eigenvalues (eV) -40.08143 -39.32286 -38.09524 -35.54504 -34.15834 -32.43216 -31.29352 -30.64222 -29.28523 -28.09985 -26.40283 -25.59373 -23.70083 -23.23848 -22.74502 -21.47312 -20.62251 -20.35198 -19.05037 -17.85122 -16.59250 -16.29205 -16.11002 -15.80076 -15.74771 -15.20099 -15.09271 -14.87829 -14.84338 -14.26988 -13.93202 -13.76822 -13.63028 -13.53505 -13.22796 -13.07531 -12.78984 -12.60613 -12.43133 -12.28696 -12.09849 -12.01573 -11.84765 -11.75680 -11.42220 -11.33358 -11.26689 -11.18439 -10.99950 -10.79885 -10.59795 -10.43144 -10.28678 -9.92428 -9.84979 -9.52591 -9.00919 -8.93720 -8.68831 -8.49179 -6.90989 -6.28363 -4.00036 2.73848 2.99553 3.19201 3.33875 3.35660 3.51465 3.54969 3.87830 4.17995 4.30197 4.33514 4.34021 4.51801 4.55852 4.61880 4.70013 4.76571 4.83936 4.86869 4.96457 5.04757 5.10731 5.10881 5.13157 5.16415 5.22760 5.24713 5.30330 5.32001 5.36875 5.46871 5.48037 5.50085 5.58585 5.66371 5.70685 5.72474 5.74012 5.76632 5.79761 5.81634 5.89884 5.94642 6.02020 6.12128 6.16921 6.48874 6.68784 6.70927 7.61405 7.94683 8.42048 8.50657 9.17928 10.80850 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.001501 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.357532 B =18652.518498 C =18915.739072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.519 6.519 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.881 5.881 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.060 3.940 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.079 4.079 22 C -0.120 4.120 23 C -0.175 4.175 24 C -0.180 4.180 25 C -0.082 4.082 26 C -0.103 4.103 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.078 0.922 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -31.869 16.870 36.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.259 5.259 3 C -0.083 4.083 4 C 0.000 4.000 5 N -0.392 5.392 6 C 0.317 3.683 7 O -0.393 6.393 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.068 4.068 19 C -0.101 4.101 20 C -0.149 4.149 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.212 4.212 24 C -0.217 4.217 25 C -0.120 4.120 26 C -0.141 4.141 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.958 -32.605 14.759 35.912 hybrid contribution 0.431 1.142 1.640 2.044 sum -2.527 -31.463 16.399 35.570 Atomic orbital electron populations 1.22549 0.87211 1.02539 1.00938 1.61824 1.08153 1.12629 1.43263 1.22251 1.00753 0.88684 0.96621 1.21214 0.99386 0.81893 0.97510 1.45880 1.59324 1.13786 1.20250 1.20254 0.79304 0.86813 0.81941 1.90704 1.39677 1.75189 1.33727 1.23279 1.04451 0.94562 1.05162 1.84795 1.74844 1.13628 1.18269 1.22323 1.40883 0.96023 1.07715 0.89401 1.24709 0.94333 0.93942 0.98282 1.69941 1.43037 1.03736 1.35011 0.86734 0.80604 0.81379 0.83142 1.19215 1.19934 1.15898 1.22204 1.00219 0.93431 0.90960 1.21136 1.00619 0.93004 0.95293 1.21537 1.01358 0.94722 0.97311 1.21104 1.00205 0.95553 0.94754 1.21529 1.00097 0.93273 0.97126 1.23003 0.90818 1.04512 1.02825 1.22993 1.02391 0.93513 1.02802 1.21174 1.01152 0.95156 0.94490 1.21459 0.99870 0.94497 0.98234 0.95567 0.90751 0.90967 0.94193 0.90098 0.90708 0.91611 0.76806 0.88535 0.88433 0.91952 0.94821 0.90685 0.91051 0.91785 0.92128 0.92016 0.91629 0.88940 0.89098 0.89079 0.88956 0.91716 0.91989 0.90360 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.13 60.06 0.55 0.67 16 2 N -0.53 -4.23 4.14 -242.91 -1.01 -5.24 16 3 C 0.05 0.37 5.07 -3.82 -0.02 0.35 16 4 C 0.12 1.40 5.61 -4.04 -0.02 1.38 16 5 N -0.74 -9.31 5.56 -60.29 -0.33 -9.64 16 6 C 0.53 9.47 7.85 -10.99 -0.09 9.39 16 7 O -0.52 -11.34 15.86 5.55 0.09 -11.25 16 8 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 10 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 11 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 12 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 13 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 14 Si 0.86 21.86 27.74 -169.99 -4.72 17.15 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 18 C 0.06 0.40 4.34 -3.83 -0.02 0.38 16 19 C -0.08 -0.50 2.02 -90.68 -0.18 -0.68 16 20 C -0.11 -0.60 5.21 -26.66 -0.14 -0.74 16 21 C -0.08 -0.43 5.67 -26.56 -0.15 -0.58 16 22 C -0.12 -0.72 1.97 -154.53 -0.31 -1.03 16 23 C -0.17 -1.02 9.93 -26.79 -0.27 -1.29 16 24 C -0.18 -1.02 9.99 -26.81 -0.27 -1.29 16 25 C -0.08 -0.53 5.67 -26.56 -0.15 -0.68 16 26 C -0.10 -0.70 5.13 -26.67 -0.14 -0.84 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.63 6.30 -51.93 -0.33 0.30 16 29 H 0.07 0.49 6.37 -51.93 -0.33 0.16 16 30 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.08 0.61 7.93 -51.93 -0.41 0.20 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.81 6.47 -51.93 -0.34 0.47 16 34 H 0.40 3.80 8.47 -40.82 -0.35 3.46 16 35 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.10 1.75 8.14 -51.91 -0.42 1.32 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 39 H 0.07 0.50 7.93 -51.93 -0.41 0.08 16 40 H 0.07 0.47 6.33 -51.93 -0.33 0.14 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 51 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 52 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 418.14 15.07 6.30 6.30 Total: -1.00 -33.18 418.14 -11.29 -44.47 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -9.65 Total: -1.15 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.76 Total: -9.19 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.57 Total: -40.72 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.18 -11.29 -44.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.473 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.54 seconds