Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.50006 * 2 1 4 4 C 1.53038 * 109.52216 * 239.92178 * 2 1 3 5 5 C 1.53046 * 109.54052 * 178.66511 * 4 2 1 6 6 C 1.53191 * 109.30980 * 61.36407 * 5 4 2 7 7 N 1.46927 * 108.77830 * 305.36710 * 6 5 4 8 8 C 1.34771 * 120.63241 * 233.61092 * 7 6 5 9 9 O 1.21282 * 120.00231 * 174.72288 * 8 7 6 10 10 C 1.50697 * 119.99890 * 354.72719 * 8 7 6 11 11 S 1.81001 * 109.47338 * 180.02562 * 10 8 7 12 12 C 1.76194 * 100.00348 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00064 * 0.02562 * 12 11 10 14 14 C 1.38802 * 120.00051 * 179.97438 * 12 11 10 15 15 N 1.31627 * 119.99993 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99859 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47355 * 60.00011 * 16 14 12 18 18 H 1.48500 * 109.47355 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47434 * 299.99870 * 16 14 12 20 20 C 1.46928 * 118.73541 * 53.60522 * 7 6 5 21 21 H 1.08994 * 109.70272 * 66.25621 * 20 7 6 22 22 C 1.53009 * 109.58508 * 186.60870 * 20 7 6 23 23 N 1.46900 * 109.47241 * 183.47828 * 22 20 7 24 24 C 1.46895 * 110.99979 * 175.36644 * 23 22 20 25 25 C 1.52998 * 109.46959 * 180.02562 * 24 23 22 26 26 C 1.53788 * 113.61129 * 274.12953 * 25 24 23 27 27 C 1.53953 * 87.02145 * 220.04859 * 26 25 24 28 28 C 1.53785 * 87.11135 * 25.36462 * 27 26 25 29 29 H 1.08998 * 109.47114 * 309.14799 * 1 2 3 30 30 H 1.09002 * 109.47626 * 69.14531 * 1 2 3 31 31 H 1.09004 * 109.47189 * 189.14851 * 1 2 3 32 32 H 1.08998 * 109.46052 * 298.68275 * 4 2 1 33 33 H 1.09001 * 109.46295 * 58.64611 * 4 2 1 34 34 H 1.08996 * 109.49750 * 181.31046 * 5 4 2 35 35 H 1.08996 * 109.49815 * 301.41535 * 5 4 2 36 36 H 1.09006 * 109.58681 * 65.15136 * 6 5 4 37 37 H 1.08997 * 109.58999 * 185.43617 * 6 5 4 38 38 H 1.09005 * 109.47169 * 299.99701 * 10 8 7 39 39 H 1.09001 * 109.47262 * 60.00244 * 10 8 7 40 40 H 0.97007 * 119.99893 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.47147 * 63.47182 * 22 20 7 42 42 H 1.09002 * 109.46566 * 303.47337 * 22 20 7 43 43 H 1.00897 * 110.99968 * 51.40616 * 23 22 20 44 44 H 1.09004 * 109.47005 * 299.99174 * 24 23 22 45 45 H 1.08998 * 109.47764 * 59.99387 * 24 23 22 46 46 H 1.08999 * 112.85257 * 45.32431 * 25 24 23 47 47 H 1.08995 * 113.61235 * 334.57308 * 26 25 24 48 48 H 1.08999 * 113.61132 * 105.47183 * 26 25 24 49 49 H 1.08993 * 113.53897 * 270.81433 * 27 26 25 50 50 H 1.08998 * 113.73856 * 139.94460 * 27 26 25 51 51 H 1.08998 * 113.61292 * 220.09148 * 28 27 26 52 52 H 1.08997 * 113.69283 * 89.19635 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7229 -1.2482 5 6 3.5714 -0.6941 -1.2655 6 6 4.1059 -1.4255 -0.0301 7 7 3.5047 -0.8282 1.1701 8 6 4.2808 -0.3846 2.1787 9 8 3.7800 0.1925 3.1206 10 6 5.7708 -0.6056 2.1362 11 16 6.5279 0.0982 3.6220 12 6 8.2189 -0.2920 3.3181 13 1 8.4984 -0.8171 2.4166 14 6 9.1921 0.0764 4.2366 15 7 8.8516 0.7168 5.3351 16 14 10.9851 -0.3367 3.9140 17 1 11.4221 0.3088 2.6500 18 1 11.8178 0.1611 5.0383 19 1 11.1407 -1.8089 3.7975 20 6 2.0413 -0.7235 1.2496 21 1 1.6038 -1.7205 1.2994 22 6 1.6511 0.0708 2.4978 23 7 0.1875 0.1030 2.6201 24 6 -0.2223 0.7636 3.8665 25 6 -1.7494 0.7772 3.9582 26 6 -2.3990 1.9722 3.2405 27 6 -3.3752 2.0519 4.4283 28 6 -2.2824 1.3739 5.2715 29 1 -0.3633 0.6488 0.7970 30 1 -0.3634 0.3658 -0.9603 31 1 -0.3634 -1.0146 0.1634 32 1 1.6978 -1.7572 -1.2351 33 1 1.6587 -0.2246 -2.1389 34 1 3.9344 -1.1888 -2.1664 35 1 3.9160 0.3398 -1.2536 36 1 3.8386 -2.4808 -0.0861 37 1 5.1904 -1.3251 0.0133 38 1 5.9785 -1.6749 2.0948 39 1 6.1850 -0.1205 1.2523 40 1 9.5317 0.9739 5.9772 41 1 2.0312 1.0889 2.4142 42 1 2.0789 -0.4055 3.3800 43 1 -0.2010 -0.8261 2.5585 44 1 0.1876 0.2197 4.7176 45 1 0.1518 1.7873 3.8752 46 1 -2.1975 -0.1826 3.7011 47 1 -1.7436 2.8389 3.1550 48 1 -2.8777 1.7076 2.2977 49 1 -4.2687 1.4413 4.2991 50 1 -3.6006 3.0707 4.7433 51 1 -2.6672 0.6271 5.9659 52 1 -1.5945 2.0757 5.7431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667359642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -9.953128 kcal Electronic energy + Delta-G solvation = -28304.572682 eV Core-core repulsion = 24623.931694 eV Total energy + Delta-G solvation = -3680.640988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.48964 -39.04644 -37.47697 -35.74374 -33.51934 -32.43962 -31.98317 -29.81257 -28.18527 -26.63742 -25.72976 -25.56276 -25.14009 -23.30387 -22.11881 -21.57844 -20.49495 -19.53137 -19.01541 -17.56264 -16.60788 -16.09104 -15.78437 -15.56319 -15.37777 -14.92421 -14.81418 -14.60141 -14.42850 -14.04699 -13.78887 -13.56681 -13.27197 -13.15991 -12.86737 -12.62790 -12.56528 -12.52822 -12.15373 -12.05750 -11.82044 -11.65200 -11.56348 -11.40159 -11.05973 -11.04846 -11.01830 -10.87313 -10.77173 -10.70344 -10.66546 -10.48483 -10.36351 -10.08769 -9.81672 -9.06829 -9.04289 -8.46448 -8.24100 -7.90984 -6.50794 -6.22491 -3.92944 2.90403 3.03374 3.22538 3.24436 3.28057 3.56018 4.16992 4.19645 4.50348 4.56836 4.62312 4.67965 4.72629 4.74484 4.88162 4.91518 5.05087 5.12642 5.20391 5.23200 5.33757 5.37465 5.40090 5.55542 5.56729 5.59389 5.62415 5.64379 5.65937 5.70228 5.73463 5.75120 5.84458 5.86502 5.87001 5.89402 5.92644 6.05417 6.08805 6.12028 6.15380 6.23024 6.28851 6.37765 6.42528 6.67876 6.74425 7.08835 7.41914 7.57974 7.60782 8.34020 8.58006 9.22761 10.84843 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.002751 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.910235 B =10174.245775 C =12268.946789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.109 3.891 7 N -0.616 5.616 8 C 0.534 3.466 9 O -0.512 6.512 10 C -0.152 4.152 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.071 0.929 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.156 3.844 21 H 0.063 0.937 22 C 0.063 3.937 23 N -0.687 5.687 24 C 0.069 3.931 25 C -0.105 4.105 26 C -0.126 4.126 27 C -0.146 4.146 28 C -0.138 4.138 29 H 0.104 0.896 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.330 0.670 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.063 0.937 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.279 -2.917 -10.752 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.153 4.153 5 C -0.175 4.175 6 C -0.014 4.014 7 N -0.352 5.352 8 C 0.322 3.678 9 O -0.386 6.386 10 C -0.302 4.302 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.053 3.947 21 H 0.081 0.919 22 C -0.065 4.065 23 N -0.319 5.319 24 C -0.060 4.060 25 C -0.124 4.124 26 C -0.163 4.163 27 C -0.184 4.184 28 C -0.176 4.176 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.147 0.853 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.974 -1.405 -9.543 23.998 hybrid contribution 2.131 -1.760 -0.845 2.890 sum -19.844 -3.165 -10.388 22.621 Atomic orbital electron populations 1.22090 0.93717 1.02619 1.02421 1.21442 0.96834 0.99528 0.93376 0.91136 1.21639 0.94971 1.00669 0.98070 1.21938 0.96390 1.01596 0.97548 1.21704 0.98960 0.96685 0.84048 1.48146 1.05800 1.62596 1.18615 1.20323 0.88553 0.77502 0.81389 1.90697 1.73491 1.40191 1.34239 1.23596 0.94127 1.05138 1.07370 1.85346 1.03240 1.74700 1.20100 1.22815 0.92066 1.43832 1.09651 0.91041 1.24985 0.99491 0.94611 0.94463 1.70007 1.34334 1.36720 1.09240 0.86235 0.82482 0.78838 0.78016 1.19927 1.20806 1.19948 1.21259 0.79383 0.98326 0.95768 0.91879 1.22716 0.85407 1.01897 0.96462 1.60919 1.11130 1.24013 1.35834 1.21923 0.93747 0.99891 0.90466 1.22522 0.94884 0.98518 0.96475 1.22885 0.97910 0.98371 0.97131 1.22867 0.97189 1.00720 0.97606 1.22931 0.98292 1.00071 0.96329 0.87780 0.94292 0.93845 0.92145 0.91946 0.90912 0.91360 0.91688 0.89269 0.89435 0.89391 0.92139 0.89755 0.91461 0.85257 0.95136 0.90899 0.89594 0.90149 0.91670 0.90575 0.91734 0.91784 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.08 37.15 0.30 -1.11 16 2 C -0.09 -0.99 2.34 -90.51 -0.21 -1.20 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.12 -1.07 5.16 -26.69 -0.14 -1.21 16 5 C -0.14 -1.31 6.08 -26.61 -0.16 -1.47 16 6 C 0.11 1.23 6.32 -3.71 -0.02 1.21 16 7 N -0.62 -8.74 2.97 -165.22 -0.49 -9.24 16 8 C 0.53 9.91 7.62 -10.99 -0.08 9.83 16 9 O -0.51 -10.93 11.28 5.56 0.06 -10.87 16 10 C -0.15 -3.06 4.56 36.00 0.16 -2.90 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 12 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 16 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.16 1.94 2.66 -67.60 -0.18 1.76 16 21 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 22 C 0.06 0.88 3.52 -3.82 -0.01 0.86 16 23 N -0.69 -7.40 3.12 -113.78 -0.36 -7.76 16 24 C 0.07 0.75 5.50 -3.83 -0.02 0.73 16 25 C -0.11 -0.93 3.89 -89.80 -0.35 -1.28 16 26 C -0.13 -1.06 7.65 -25.82 -0.20 -1.26 16 27 C -0.15 -1.12 8.09 -25.83 -0.21 -1.33 16 28 C -0.14 -1.16 7.65 -25.91 -0.20 -1.36 16 29 H 0.10 1.07 5.73 -51.93 -0.30 0.77 16 30 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.03 5.97 -51.93 -0.31 0.72 16 38 H 0.09 1.66 8.12 -51.91 -0.42 1.24 16 39 H 0.09 1.66 7.47 -51.92 -0.39 1.28 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.08 1.42 7.27 -51.93 -0.38 1.04 16 42 H 0.07 1.16 6.15 -51.93 -0.32 0.84 16 43 H 0.33 3.18 8.49 -39.29 -0.33 2.84 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 407.42 15.07 6.14 6.14 Total: -1.00 -31.41 407.42 -11.84 -43.25 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -9.57 Total: 2.99 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.12 Total: -11.63 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.11 Total: -42.38 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.06 Total: -10.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.41 -11.84 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667359642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.292 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds