Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.52246 * 2 1 4 4 C 1.53044 * 109.49723 * 120.07615 * 2 1 3 5 5 C 1.53043 * 109.53534 * 58.59214 * 4 2 1 6 6 C 1.53188 * 109.31287 * 61.36319 * 5 4 2 7 7 N 1.46924 * 108.77813 * 305.36496 * 6 5 4 8 8 C 1.34772 * 120.63246 * 233.62927 * 7 6 5 9 9 O 1.21280 * 120.00087 * 185.14853 * 8 7 6 10 10 C 1.50707 * 119.99696 * 5.15389 * 8 7 6 11 11 S 1.81002 * 109.46774 * 179.97438 * 10 8 7 12 12 C 1.76201 * 99.99853 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99916 * 179.97438 * 12 11 10 15 15 N 1.31639 * 119.99829 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00359 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47328 * 89.99753 * 16 14 12 18 18 H 1.48500 * 109.47284 * 210.00224 * 16 14 12 19 19 H 1.48507 * 109.46962 * 330.00151 * 16 14 12 20 20 C 1.46927 * 118.73724 * 53.60707 * 7 6 5 21 21 H 1.09004 * 109.58455 * 66.32014 * 20 7 6 22 22 C 1.53001 * 109.58403 * 186.60474 * 20 7 6 23 23 N 1.46903 * 109.47180 * 286.04372 * 22 20 7 24 24 C 1.46894 * 110.99841 * 180.02562 * 23 22 20 25 25 C 1.53008 * 109.47063 * 179.97438 * 24 23 22 26 26 C 1.53783 * 113.61401 * 274.13579 * 25 24 23 27 27 C 1.53956 * 87.01881 * 220.04612 * 26 25 24 28 28 C 1.53776 * 113.61407 * 176.52984 * 25 24 23 29 29 H 1.09004 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.48106 * 300.08103 * 1 2 3 31 31 H 1.09000 * 109.47262 * 60.08503 * 1 2 3 32 32 H 1.09005 * 109.46119 * 298.56892 * 4 2 1 33 33 H 1.08997 * 109.45004 * 178.60501 * 4 2 1 34 34 H 1.09001 * 109.49338 * 301.41235 * 5 4 2 35 35 H 1.09005 * 109.52222 * 181.33425 * 5 4 2 36 36 H 1.09003 * 109.58355 * 185.57567 * 6 5 4 37 37 H 1.08996 * 109.69943 * 65.22488 * 6 5 4 38 38 H 1.09000 * 109.47092 * 299.99121 * 10 8 7 39 39 H 1.08997 * 109.47471 * 59.99625 * 10 8 7 40 40 H 0.97002 * 119.99583 * 180.02562 * 15 14 12 41 41 H 1.09005 * 109.47022 * 166.04775 * 22 20 7 42 42 H 1.08997 * 109.47133 * 46.04712 * 22 20 7 43 43 H 1.00896 * 110.99693 * 303.95791 * 23 22 20 44 44 H 1.09000 * 109.47286 * 60.00216 * 24 23 22 45 45 H 1.08996 * 109.47503 * 300.00043 * 24 23 22 46 46 H 1.09002 * 112.84769 * 45.33231 * 25 24 23 47 47 H 1.08996 * 113.61365 * 334.57220 * 26 25 24 48 48 H 1.09005 * 113.60966 * 105.47072 * 26 25 24 49 49 H 1.09001 * 113.53508 * 270.81478 * 27 26 25 50 50 H 1.08994 * 113.66413 * 139.93036 * 27 26 25 51 51 H 1.08999 * 113.61377 * 254.53426 * 28 25 24 52 52 H 1.09002 * 113.61568 * 25.43127 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 1.5030 -2.1557 1.2661 6 6 2.0141 -2.9039 0.0309 7 7 1.6517 -2.1382 -1.1695 8 6 0.9742 -2.7218 -2.1778 9 8 0.7624 -2.1073 -3.2017 10 6 0.4799 -4.1381 -2.0330 11 16 -0.3859 -4.6324 -3.5437 12 6 -0.8432 -6.2778 -3.1098 13 1 -0.5714 -6.6768 -2.1438 14 6 -1.5526 -7.0610 -4.0097 15 7 -1.8938 -8.2905 -3.6857 16 14 -2.0232 -6.3707 -5.6803 17 1 -0.9446 -6.6626 -6.6584 18 1 -3.2889 -6.9990 -6.1369 19 1 -2.2104 -4.9013 -5.5739 20 6 2.0414 -0.7238 -1.2495 21 1 3.1275 -0.6463 -1.3004 22 6 1.4229 -0.0912 -2.4978 23 7 2.1401 -0.5604 -3.6910 24 6 1.5728 0.0281 -4.9115 25 6 2.3444 -0.4824 -6.1302 26 6 3.6037 0.3399 -6.4507 27 6 3.2296 0.1840 -7.9360 28 6 1.7742 0.0099 -7.4708 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5150 0.8892 31 1 -0.3634 0.5125 -0.8907 32 1 1.6986 -0.1957 2.1390 33 1 3.1304 -0.7443 1.2352 34 1 0.4133 -2.1354 1.2541 35 1 1.8476 -2.6631 2.1672 36 1 1.5555 -3.8918 -0.0136 37 1 3.0979 -3.0063 0.0857 38 1 1.3270 -4.8033 -1.8652 39 1 -0.2036 -4.1996 -1.1862 40 1 -2.3892 -8.8380 -4.3148 41 1 1.4996 0.9941 -2.4312 42 1 0.3736 -0.3777 -2.5685 43 1 3.1272 -0.3639 -3.6201 44 1 1.6508 1.1142 -4.8614 45 1 0.5245 -0.2571 -4.9991 46 1 2.5211 -1.5576 -6.0993 47 1 3.5558 1.3688 -6.0940 48 1 4.5330 -0.1607 -6.1787 49 1 3.6497 -0.7087 -8.3993 50 1 3.3945 1.0857 -8.5257 51 1 1.2286 -0.7566 -8.0211 52 1 1.2253 0.9484 -7.3935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667359644.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -9.561584 kcal Electronic energy + Delta-G solvation = -29151.660998 eV Core-core repulsion = 25471.036989 eV Total energy + Delta-G solvation = -3680.624009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.60771 -39.78631 -38.47782 -36.42630 -34.67066 -34.44910 -32.85480 -30.83442 -29.14187 -27.85065 -27.56380 -26.59114 -26.26651 -24.67983 -22.99637 -22.67373 -21.30319 -20.20315 -19.83699 -19.14242 -17.74723 -17.20544 -17.08667 -16.70626 -16.61575 -16.20418 -15.81791 -15.65709 -15.45482 -15.22206 -14.93733 -14.86712 -14.67631 -14.28489 -14.08922 -13.64120 -13.54544 -13.37593 -13.34899 -13.30446 -13.26494 -13.00788 -12.78585 -12.70790 -12.52252 -12.34444 -12.22281 -11.97887 -11.86148 -11.74797 -11.43459 -11.32192 -11.24888 -11.16536 -11.05501 -10.89314 -10.44902 -9.90495 -9.35400 -8.92850 -8.77100 -8.51088 -6.18999 1.03416 1.30151 1.46876 1.59428 1.93706 2.24180 2.28407 2.74994 2.87308 3.28216 3.62138 3.76390 3.83957 3.88031 3.92972 3.99263 4.02066 4.10137 4.19235 4.27118 4.28575 4.33376 4.45876 4.49367 4.52040 4.59094 4.64639 4.69704 4.75765 4.82928 4.84155 4.84953 4.90127 4.98976 5.02107 5.05461 5.07963 5.10241 5.20162 5.20579 5.25084 5.27615 5.34737 5.42446 5.55043 5.65062 5.71193 5.85379 6.11289 6.36070 6.58617 6.79760 6.94661 7.55583 8.61836 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007021 B = 0.004926 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3986.890987 B = 5682.415004 C = 9071.983635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.097 0.903 4 C -0.107 4.107 5 C -0.134 4.134 6 C 0.102 3.898 7 N -0.601 5.601 8 C 0.518 3.482 9 O -0.482 6.482 10 C -0.106 4.106 11 S -0.164 6.164 12 C -0.530 4.530 13 H 0.056 0.944 14 C 0.046 3.954 15 N -0.920 5.920 16 Si 0.916 3.084 17 H -0.263 1.263 18 H -0.260 1.260 19 H -0.237 1.237 20 C 0.160 3.840 21 H 0.078 0.922 22 C 0.080 3.920 23 N -0.660 5.660 24 C 0.094 3.906 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.135 4.135 28 C -0.140 4.140 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.276 0.724 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.324 0.676 44 H 0.027 0.973 45 H 0.040 0.960 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.054 0.946 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.587 22.746 6.384 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.115 0.885 4 C -0.144 4.144 5 C -0.172 4.172 6 C -0.020 4.020 7 N -0.337 5.337 8 C 0.302 3.698 9 O -0.354 6.354 10 C -0.257 4.257 11 S 0.063 5.937 12 C -0.677 4.677 13 H 0.074 0.926 14 C -0.159 4.159 15 N -0.558 5.558 16 Si 0.738 3.262 17 H -0.188 1.188 18 H -0.184 1.184 19 H -0.161 1.161 20 C 0.057 3.943 21 H 0.096 0.904 22 C -0.049 4.049 23 N -0.292 5.292 24 C -0.035 4.035 25 C -0.128 4.128 26 C -0.165 4.165 27 C -0.172 4.172 28 C -0.178 4.178 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.141 0.859 44 H 0.045 0.955 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.098 0.902 51 H 0.073 0.927 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.804 22.903 4.762 26.202 hybrid contribution -0.133 -0.779 0.671 1.036 sum 11.671 22.124 5.433 25.597 Atomic orbital electron populations 1.21837 0.95656 1.01181 1.01513 1.21507 0.95880 0.99976 0.94126 0.88523 1.21510 1.01071 0.94709 0.97108 1.21952 1.01103 0.96752 0.97437 1.21880 1.00977 0.95092 0.84099 1.47790 1.56879 1.11008 1.18052 1.19688 0.79377 0.86874 0.83818 1.90858 1.54155 1.62678 1.27707 1.23331 1.02806 0.98411 1.01134 1.84550 1.71399 1.14625 1.23171 1.22524 1.41435 0.98622 1.05162 0.92603 1.25546 0.94112 0.94338 1.01859 1.70030 1.38876 1.08881 1.38006 0.85852 0.79218 0.81301 0.79863 1.18813 1.18394 1.16116 1.21299 0.98642 0.79694 0.94660 0.90392 1.21988 0.99540 0.94532 0.88842 1.60608 1.05265 1.62181 1.01138 1.21589 0.97896 0.94544 0.89478 1.22470 0.97075 0.99381 0.93867 1.22956 0.97103 1.00057 0.96340 1.22786 0.95620 1.02271 0.96528 1.22936 0.97275 1.01224 0.96331 0.94108 0.91441 0.93787 0.90285 0.90563 0.92341 0.89085 0.90776 0.90016 0.88945 0.88944 0.91454 0.95307 0.91844 0.85854 0.95455 0.94166 0.91331 0.89486 0.91495 0.90518 0.90205 0.92731 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.24 71.98 0.59 -2.15 16 2 C -0.10 -1.47 2.77 -10.72 -0.03 -1.50 16 3 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.11 -1.32 5.43 30.62 0.17 -1.15 16 5 C -0.13 -2.07 5.74 30.67 0.18 -1.89 16 6 C 0.10 2.04 6.35 86.36 0.55 2.59 16 7 N -0.60 -15.21 2.41 -795.04 -1.92 -17.13 16 8 C 0.52 18.14 7.44 87.66 0.65 18.80 16 9 O -0.48 -19.09 9.45 -3.03 -0.03 -19.12 16 10 C -0.11 -4.25 4.51 71.24 0.32 -3.93 16 11 S -0.16 -8.50 18.55 -56.49 -1.05 -9.54 16 12 C -0.53 -31.79 10.04 67.95 0.68 -31.10 16 13 H 0.06 3.56 8.03 -2.91 -0.02 3.54 16 14 C 0.05 2.79 5.50 84.86 0.47 3.26 16 15 N -0.92 -57.23 13.97 21.65 0.30 -56.93 16 16 Si 0.92 46.21 27.74 68.60 1.90 48.11 16 17 H -0.26 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.24 -11.96 6.74 99.48 0.67 -11.29 16 20 C 0.16 3.28 2.78 44.97 0.13 3.41 16 21 H 0.08 1.43 8.05 -2.38 -0.02 1.41 16 22 C 0.08 1.97 3.34 86.30 0.29 2.26 16 23 N -0.66 -17.94 4.00 -513.88 -2.06 -20.00 16 24 C 0.09 2.55 5.14 86.31 0.44 3.00 16 25 C -0.11 -2.78 3.89 -10.27 -0.04 -2.82 16 26 C -0.13 -2.43 7.65 31.18 0.24 -2.19 16 27 C -0.13 -2.52 8.09 31.18 0.25 -2.27 16 28 C -0.14 -3.17 7.64 31.12 0.24 -2.93 16 29 H 0.04 0.96 5.97 -2.38 -0.01 0.94 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.93 6.67 -2.39 -0.02 0.91 16 32 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.09 6.33 -2.39 -0.02 1.07 16 35 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.07 1.68 5.93 -2.39 -0.01 1.67 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 3.60 7.73 -2.39 -0.02 3.59 16 39 H 0.09 3.60 7.90 -2.40 -0.02 3.58 16 40 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.03 0.61 8.08 -2.38 -0.02 0.60 16 42 H 0.06 2.03 5.34 -2.39 -0.01 2.01 16 43 H 0.32 7.60 8.66 -89.70 -0.78 6.83 16 44 H 0.03 0.64 7.87 -2.39 -0.02 0.62 16 45 H 0.04 1.36 7.93 -2.39 -0.02 1.34 16 46 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.09 1.44 7.92 -2.39 -0.02 1.43 16 48 H 0.07 1.24 8.14 -2.38 -0.02 1.23 16 49 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -70.80 400.01 2.35 -68.45 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.08 Total: 24.79 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 5.12 Total: -18.63 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -3.67 Total: -94.05 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.03 Total: -19.12 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.05 Total: -9.54 kcal Total: -70.80 2.35 -68.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667359644.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.885 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds