Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47139 * 2 1 4 4 C 1.46856 * 110.99619 * 293.95452 * 3 2 1 5 5 C 1.53039 * 109.51787 * 185.84053 * 4 3 2 6 6 C 1.53123 * 109.31189 * 300.79882 * 5 4 3 7 7 C 1.53203 * 109.11533 * 57.63615 * 6 5 4 8 8 H 1.09007 * 109.52297 * 62.34418 * 7 6 5 9 9 C 1.53006 * 109.49217 * 182.41941 * 7 6 5 10 10 H 1.09000 * 109.49134 * 59.76113 * 9 7 6 11 11 C 1.53036 * 109.49548 * 179.82310 * 9 7 6 12 12 C 1.53042 * 109.53485 * 181.31719 * 11 9 7 13 13 C 1.53187 * 109.31398 * 298.63831 * 12 11 9 14 14 N 1.46927 * 108.77564 * 54.63715 * 13 12 11 15 15 C 1.34773 * 120.62890 * 126.41380 * 14 13 12 16 16 O 1.21285 * 119.99851 * 179.97438 * 15 14 13 17 17 C 1.50702 * 120.00344 * 359.97438 * 15 14 13 18 18 S 1.80997 * 109.47025 * 179.97438 * 17 15 14 19 19 C 1.76205 * 100.00118 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99223 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00017 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00277 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47033 * 89.99679 * 23 21 19 25 25 H 1.48494 * 109.47239 * 209.99987 * 23 21 19 26 26 H 1.48503 * 109.46764 * 330.00291 * 23 21 19 27 27 C 1.46919 * 118.73698 * 306.38835 * 14 13 12 28 28 C 1.46846 * 111.00121 * 58.16335 * 3 2 1 29 29 H 1.08998 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47420 * 300.00138 * 1 2 3 31 31 H 1.09002 * 109.47148 * 60.00137 * 1 2 3 32 32 H 1.09000 * 109.46927 * 239.99926 * 2 1 3 33 33 H 1.09002 * 109.47148 * 119.99863 * 2 1 3 34 34 H 1.09000 * 109.46462 * 65.82793 * 4 3 2 35 35 H 1.09002 * 109.45930 * 305.85061 * 4 3 2 36 36 H 1.09002 * 109.50563 * 60.76214 * 5 4 3 37 37 H 1.09003 * 109.50107 * 180.84195 * 5 4 3 38 38 H 1.08994 * 109.52349 * 177.58253 * 6 5 4 39 39 H 1.08997 * 109.52263 * 297.77214 * 6 5 4 40 40 H 1.09003 * 109.46180 * 301.33979 * 11 9 7 41 41 H 1.08996 * 109.45766 * 61.31443 * 11 9 7 42 42 H 1.09009 * 109.49385 * 58.59142 * 12 11 9 43 43 H 1.08999 * 109.49564 * 178.65041 * 12 11 9 44 44 H 1.09006 * 109.58546 * 174.42065 * 13 12 11 45 45 H 1.08995 * 109.59093 * 294.70114 * 13 12 11 46 46 H 1.08992 * 109.47307 * 300.00106 * 17 15 14 47 47 H 1.09004 * 109.46794 * 60.00585 * 17 15 14 48 48 H 0.97001 * 120.00485 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.58789 * 293.82471 * 27 14 13 50 50 H 1.09001 * 109.58858 * 173.40171 * 27 14 13 51 51 H 1.09004 * 109.46012 * 294.17710 * 28 3 2 52 52 H 1.08994 * 109.46057 * 54.14289 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0667 -1.2530 5 6 2.3184 3.4528 -1.2789 6 6 1.8235 4.2658 -0.0795 7 6 2.1566 3.5100 1.2108 8 1 3.2378 3.4070 1.3038 9 6 1.6124 4.2858 2.4120 10 1 0.5316 4.3910 2.3176 11 6 1.9413 3.5286 3.7006 12 6 1.3687 4.2871 4.9002 13 6 2.0131 5.6748 4.9768 14 7 1.8262 6.3547 3.6878 15 6 1.2684 7.5804 3.6326 16 8 1.1199 8.1314 2.5624 17 6 0.8291 8.2662 4.9006 18 16 0.1256 9.8847 4.4984 19 6 -0.2908 10.4477 6.1154 20 1 -0.0877 9.8237 6.9732 21 6 -0.8795 11.6928 6.2865 22 7 -1.1901 12.1136 7.4945 23 14 -1.2313 12.7716 4.8026 24 1 -2.5919 12.4750 4.2864 25 1 -1.1530 14.2003 5.1996 26 1 -0.2288 12.4967 3.7421 27 6 2.2595 5.6734 2.4604 28 6 1.5133 2.1222 1.1647 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5873 2.1709 -1.3200 35 1 2.0317 1.4808 -2.0981 36 1 3.4022 3.3488 -1.2258 37 1 2.0467 3.9643 -2.2023 38 1 2.3156 5.2383 -0.0706 39 1 0.7447 4.4031 -0.1527 40 1 1.5024 2.5317 3.6582 41 1 3.0228 3.4451 3.8067 42 1 0.2901 4.3928 4.7827 43 1 1.5825 3.7351 5.8154 44 1 1.5385 6.2549 5.7682 45 1 3.0776 5.5722 5.1873 46 1 0.0768 7.6569 5.4013 47 1 1.6878 8.3973 5.5590 48 1 -1.6019 12.9836 7.6141 49 1 3.3446 5.5706 2.4631 50 1 1.9475 6.2527 1.5913 51 1 0.4310 2.2261 1.0863 52 1 1.7606 1.5768 2.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673496035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -53.036071 kcal Electronic energy + Delta-G solvation = -28209.607220 eV Core-core repulsion = 24527.098016 eV Total energy + Delta-G solvation = -3682.509204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.49123 -39.40064 -37.38461 -35.10810 -33.27308 -32.43463 -31.84947 -30.38520 -29.69194 -28.38716 -25.81536 -25.55538 -24.79903 -23.81859 -22.68301 -21.47325 -20.44261 -19.80221 -19.05524 -17.67065 -16.86882 -16.20465 -15.90129 -15.44402 -15.35160 -15.09458 -14.94265 -14.71292 -14.42224 -14.35422 -14.02667 -13.91192 -13.56014 -13.29461 -13.25833 -13.03630 -12.84470 -12.75281 -12.62657 -12.27669 -12.16383 -11.99659 -11.90628 -11.38731 -11.28706 -11.20881 -11.09721 -11.01759 -10.99370 -10.93493 -10.75528 -10.59107 -10.41154 -10.17387 -9.85043 -9.42638 -9.00013 -8.62093 -8.53486 -8.47911 -6.91199 -6.28541 -4.00098 2.73156 2.96142 3.21188 3.33482 3.51066 3.55141 3.62303 4.28300 4.33553 4.43241 4.51862 4.60552 4.64551 4.71615 4.73311 4.80803 4.84718 4.88196 5.00145 5.05721 5.10072 5.10561 5.14677 5.16852 5.26257 5.28164 5.36786 5.41455 5.46554 5.48060 5.51664 5.56150 5.62739 5.66590 5.70387 5.71113 5.76110 5.78294 5.81351 5.85817 5.88532 5.93003 6.00461 6.09138 6.11595 6.27253 6.61430 6.75682 6.76765 7.51210 7.94492 8.41731 8.47371 9.17757 10.80636 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.002261 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.903448 B =12379.307169 C =12967.782246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.537 5.537 4 C 0.053 3.947 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.074 4.074 8 H 0.080 0.920 9 C -0.096 4.096 10 H 0.074 0.926 11 C -0.114 4.114 12 C -0.136 4.136 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.533 3.467 16 O -0.521 6.521 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.119 3.881 28 C 0.059 3.941 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 49 H 0.063 0.937 50 H 0.094 0.906 51 H 0.037 0.963 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 -26.177 -12.935 30.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.078 4.078 3 N -0.260 5.260 4 C -0.075 4.075 5 C -0.154 4.154 6 C -0.159 4.159 7 C -0.094 4.094 8 H 0.099 0.901 9 C -0.116 4.116 10 H 0.092 0.908 11 C -0.152 4.152 12 C -0.174 4.174 13 C -0.018 4.018 14 N -0.353 5.353 15 C 0.321 3.679 16 O -0.395 6.395 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.004 4.004 28 C -0.069 4.069 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.055 0.945 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.074 -25.210 -14.369 30.119 hybrid contribution -1.086 -0.120 0.933 1.437 sum 6.987 -25.330 -13.436 29.512 Atomic orbital electron populations 1.22450 0.98260 1.02349 1.02227 1.22147 0.92881 0.90009 1.02717 1.62147 1.59385 1.01933 1.02567 1.22115 0.98071 0.95373 0.91934 1.21585 1.01202 0.94430 0.98230 1.21722 1.01300 0.98903 0.93948 1.21160 1.00970 0.93429 0.93821 0.90142 1.21547 1.00954 0.94715 0.94361 0.90777 1.21617 1.01155 0.98577 0.93825 1.21930 1.01061 0.95707 0.98718 1.21745 1.00848 0.93477 0.85687 1.48054 1.62591 1.17244 1.07399 1.20288 0.76310 0.80322 0.90961 1.90681 1.54065 1.63978 1.30825 1.23306 1.04223 1.01659 0.97952 1.84790 1.79314 1.13119 1.14505 1.22308 1.46878 1.06574 0.91012 0.89414 1.24712 0.93763 0.96728 0.96134 1.69938 1.40488 1.20281 1.21003 0.86733 0.81020 0.80258 0.83838 1.19238 1.19954 1.15909 1.21585 0.98214 0.92214 0.88342 1.22186 0.97130 0.94245 0.93310 0.92126 0.92275 0.92554 0.90818 0.90688 0.94729 0.91057 0.91122 0.91531 0.91107 0.92106 0.91627 0.91625 0.91364 0.90655 0.89239 0.91406 0.88623 0.88558 0.91958 0.91865 0.88799 0.94518 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 9.21 37.16 0.34 -0.85 16 2 C 0.05 0.32 6.08 -3.82 -0.02 0.30 16 3 N -0.54 -4.12 4.86 -234.66 -1.14 -5.26 16 4 C 0.05 0.39 5.05 -3.83 -0.02 0.37 16 5 C -0.12 -0.89 6.09 -26.65 -0.16 -1.06 16 6 C -0.12 -1.05 4.88 -26.56 -0.13 -1.18 16 7 C -0.07 -0.61 1.94 -90.50 -0.18 -0.78 16 8 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 9 C -0.10 -0.88 1.92 -90.50 -0.17 -1.06 16 10 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -0.90 4.85 -26.69 -0.13 -1.03 16 12 C -0.14 -1.18 6.08 -26.61 -0.16 -1.34 16 13 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 14 N -0.62 -8.47 2.97 -172.78 -0.51 -8.99 16 15 C 0.53 9.81 7.72 -10.99 -0.08 9.72 16 16 O -0.52 -11.42 15.28 5.55 0.08 -11.33 16 17 C -0.12 -2.38 4.50 36.01 0.16 -2.22 16 18 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 19 C -0.52 -15.03 10.04 30.94 0.31 -14.71 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 23 Si 0.86 21.90 27.74 -169.99 -4.72 17.19 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.12 1.39 5.20 -3.72 -0.02 1.37 16 28 C 0.06 0.45 3.74 -3.84 -0.01 0.44 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 6.51 -51.93 -0.34 0.06 16 31 H 0.06 0.37 6.68 -51.93 -0.35 0.03 16 32 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.03 0.27 6.76 -51.93 -0.35 -0.08 16 35 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.66 6.72 -51.93 -0.35 0.31 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.46 6.38 -51.93 -0.33 0.13 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.76 7.69 -51.92 -0.40 1.36 16 47 H 0.10 1.78 7.94 -51.91 -0.41 1.36 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.28 5.69 -51.93 -0.30 0.99 16 51 H 0.04 0.31 6.61 -51.93 -0.34 -0.03 16 52 H 0.08 0.56 6.43 -51.93 -0.33 0.22 16 LS Contribution 396.97 15.07 5.98 5.98 Total: -1.00 -32.91 396.97 -11.21 -44.13 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -9.30 Total: -1.98 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.40 Total: -8.23 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.88 Total: -40.07 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.19 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.91 -11.21 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673496035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.910 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds