Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47139 * 2 1 4 4 C 1.46856 * 110.99619 * 293.95452 * 3 2 1 5 5 C 1.53039 * 109.51787 * 185.84053 * 4 3 2 6 6 C 1.53123 * 109.31189 * 300.79882 * 5 4 3 7 7 C 1.53203 * 109.11533 * 57.63615 * 6 5 4 8 8 H 1.09007 * 109.52297 * 62.34418 * 7 6 5 9 9 C 1.53006 * 109.49217 * 182.41941 * 7 6 5 10 10 H 1.09000 * 109.49134 * 59.76113 * 9 7 6 11 11 C 1.53036 * 109.49548 * 179.82310 * 9 7 6 12 12 C 1.53042 * 109.53485 * 181.31719 * 11 9 7 13 13 C 1.53187 * 109.31398 * 298.63831 * 12 11 9 14 14 N 1.46927 * 108.77564 * 54.63715 * 13 12 11 15 15 C 1.34773 * 120.62890 * 126.41380 * 14 13 12 16 16 O 1.21285 * 119.99851 * 179.97438 * 15 14 13 17 17 C 1.50702 * 120.00344 * 359.97438 * 15 14 13 18 18 S 1.80997 * 109.47025 * 179.97438 * 17 15 14 19 19 C 1.76205 * 100.00118 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99223 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00017 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00277 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47033 * 89.99679 * 23 21 19 25 25 H 1.48494 * 109.47239 * 209.99987 * 23 21 19 26 26 H 1.48503 * 109.46764 * 330.00291 * 23 21 19 27 27 C 1.46919 * 118.73698 * 306.38835 * 14 13 12 28 28 C 1.46846 * 111.00121 * 58.16335 * 3 2 1 29 29 H 1.08998 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47420 * 300.00138 * 1 2 3 31 31 H 1.09002 * 109.47148 * 60.00137 * 1 2 3 32 32 H 1.09000 * 109.46927 * 239.99926 * 2 1 3 33 33 H 1.09002 * 109.47148 * 119.99863 * 2 1 3 34 34 H 1.09000 * 109.46462 * 65.82793 * 4 3 2 35 35 H 1.09002 * 109.45930 * 305.85061 * 4 3 2 36 36 H 1.09002 * 109.50563 * 60.76214 * 5 4 3 37 37 H 1.09003 * 109.50107 * 180.84195 * 5 4 3 38 38 H 1.08994 * 109.52349 * 177.58253 * 6 5 4 39 39 H 1.08997 * 109.52263 * 297.77214 * 6 5 4 40 40 H 1.09003 * 109.46180 * 301.33979 * 11 9 7 41 41 H 1.08996 * 109.45766 * 61.31443 * 11 9 7 42 42 H 1.09009 * 109.49385 * 58.59142 * 12 11 9 43 43 H 1.08999 * 109.49564 * 178.65041 * 12 11 9 44 44 H 1.09006 * 109.58546 * 174.42065 * 13 12 11 45 45 H 1.08995 * 109.59093 * 294.70114 * 13 12 11 46 46 H 1.08992 * 109.47307 * 300.00106 * 17 15 14 47 47 H 1.09004 * 109.46794 * 60.00585 * 17 15 14 48 48 H 0.97001 * 120.00485 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.58789 * 293.82471 * 27 14 13 50 50 H 1.09001 * 109.58858 * 173.40171 * 27 14 13 51 51 H 1.09004 * 109.46012 * 294.17710 * 28 3 2 52 52 H 1.08994 * 109.46057 * 54.14289 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0667 -1.2530 5 6 2.3184 3.4528 -1.2789 6 6 1.8235 4.2658 -0.0795 7 6 2.1566 3.5100 1.2108 8 1 3.2378 3.4070 1.3038 9 6 1.6124 4.2858 2.4120 10 1 0.5316 4.3910 2.3176 11 6 1.9413 3.5286 3.7006 12 6 1.3687 4.2871 4.9002 13 6 2.0131 5.6748 4.9768 14 7 1.8262 6.3547 3.6878 15 6 1.2684 7.5804 3.6326 16 8 1.1199 8.1314 2.5624 17 6 0.8291 8.2662 4.9006 18 16 0.1256 9.8847 4.4984 19 6 -0.2908 10.4477 6.1154 20 1 -0.0877 9.8237 6.9732 21 6 -0.8795 11.6928 6.2865 22 7 -1.1901 12.1136 7.4945 23 14 -1.2313 12.7716 4.8026 24 1 -2.5919 12.4750 4.2864 25 1 -1.1530 14.2003 5.1996 26 1 -0.2288 12.4967 3.7421 27 6 2.2595 5.6734 2.4604 28 6 1.5133 2.1222 1.1647 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5873 2.1709 -1.3200 35 1 2.0317 1.4808 -2.0981 36 1 3.4022 3.3488 -1.2258 37 1 2.0467 3.9643 -2.2023 38 1 2.3156 5.2383 -0.0706 39 1 0.7447 4.4031 -0.1527 40 1 1.5024 2.5317 3.6582 41 1 3.0228 3.4451 3.8067 42 1 0.2901 4.3928 4.7827 43 1 1.5825 3.7351 5.8154 44 1 1.5385 6.2549 5.7682 45 1 3.0776 5.5722 5.1873 46 1 0.0768 7.6569 5.4013 47 1 1.6878 8.3973 5.5590 48 1 -1.6019 12.9836 7.6141 49 1 3.3446 5.5706 2.4631 50 1 1.9475 6.2527 1.5913 51 1 0.4310 2.2261 1.0863 52 1 1.7606 1.5768 2.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673496035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -73.096483 kcal Electronic energy + Delta-G solvation = -28210.477105 eV Core-core repulsion = 24527.098016 eV Total energy + Delta-G solvation = -3683.379089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45866 -40.32671 -38.43007 -35.90221 -34.68449 -34.12726 -32.66546 -31.51957 -30.41111 -29.36196 -27.87442 -26.57693 -25.51489 -24.63435 -23.39473 -22.15755 -21.35144 -20.57157 -20.23001 -19.48506 -18.25225 -17.21366 -17.00123 -16.79325 -16.61754 -16.21436 -15.77779 -15.65818 -15.39960 -15.26120 -15.09088 -14.93347 -14.77346 -14.43621 -14.37977 -14.17247 -13.77436 -13.61146 -13.45550 -13.34151 -13.20947 -13.03056 -13.02329 -12.69646 -12.68348 -12.54120 -12.06152 -11.95638 -11.86783 -11.81747 -11.67808 -11.59447 -11.46374 -11.18707 -11.17969 -10.89155 -10.84399 -10.52800 -9.66375 -9.20658 -9.01745 -8.52568 -6.23706 0.96278 1.29948 1.44989 1.50983 1.53454 2.07107 2.24013 2.67304 2.85476 2.98953 3.48540 3.66406 3.74952 3.82891 3.99332 4.04705 4.06637 4.14025 4.16614 4.18074 4.31937 4.33318 4.37562 4.43533 4.46205 4.50988 4.54944 4.59930 4.63515 4.72175 4.79755 4.85760 4.86023 4.88960 4.94305 4.97768 5.00155 5.06085 5.12562 5.17382 5.19974 5.22184 5.29218 5.37602 5.42500 5.54850 5.58410 5.69853 6.10145 6.17694 6.20313 6.26795 6.92561 7.08227 8.59705 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.002261 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.903448 B =12379.307169 C =12967.782246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.543 5.543 4 C 0.054 3.946 5 C -0.113 4.113 6 C -0.122 4.122 7 C -0.065 4.065 8 H 0.085 0.915 9 C -0.086 4.086 10 H 0.055 0.945 11 C -0.110 4.110 12 C -0.131 4.131 13 C 0.096 3.904 14 N -0.604 5.604 15 C 0.532 3.468 16 O -0.565 6.565 17 C -0.105 4.105 18 S -0.178 6.178 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.238 1.238 27 C 0.117 3.883 28 C 0.064 3.936 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.277 0.723 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.027 0.973 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.024 -28.483 -13.352 32.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.077 4.077 3 N -0.266 5.266 4 C -0.074 4.074 5 C -0.151 4.151 6 C -0.159 4.159 7 C -0.085 4.085 8 H 0.104 0.896 9 C -0.105 4.105 10 H 0.073 0.927 11 C -0.147 4.147 12 C -0.169 4.169 13 C -0.026 4.026 14 N -0.338 5.338 15 C 0.319 3.681 16 O -0.444 6.444 17 C -0.255 4.255 18 S 0.049 5.951 19 C -0.675 4.675 20 H 0.081 0.919 21 C -0.160 4.160 22 N -0.553 5.553 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.162 1.162 27 C -0.005 4.005 28 C -0.064 4.064 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.087 0.913 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.045 0.955 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.263 -27.568 -14.760 32.614 hybrid contribution -1.385 0.432 1.098 1.819 sum 7.878 -27.136 -13.663 31.386 Atomic orbital electron populations 1.22405 0.98251 1.02738 1.01474 1.22203 0.92831 0.89262 1.03452 1.62171 1.59508 1.02543 1.02417 1.22107 0.97627 0.95276 0.92367 1.21558 1.01173 0.94542 0.97837 1.21705 1.00283 0.98837 0.95120 1.21071 1.01100 0.93520 0.92786 0.89642 1.21433 0.99522 0.93550 0.96043 0.92676 1.21617 1.02121 0.98783 0.92160 1.21918 1.00027 0.94637 1.00327 1.22082 1.02618 0.94225 0.83697 1.48093 1.60420 1.15692 1.09563 1.20029 0.76822 0.81652 0.89562 1.90664 1.56414 1.65524 1.31823 1.23268 1.04743 0.98266 0.99271 1.84728 1.80123 1.17538 1.12752 1.22431 1.46667 1.06526 0.91849 0.91886 1.25547 0.93653 0.98053 0.98704 1.70010 1.41396 1.21146 1.22774 0.85878 0.80784 0.79275 0.80503 1.18747 1.18205 1.16201 1.21748 0.99388 0.92893 0.86480 1.22129 0.96444 0.93899 0.93933 0.91158 0.93014 0.93301 0.90109 0.89948 0.95424 0.90120 0.90999 0.91164 0.92124 0.93538 0.90092 0.90181 0.92733 0.88110 0.89778 0.88987 0.87294 0.87087 0.91343 0.89979 0.91201 0.95492 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 9.21 71.98 0.66 -1.39 16 2 C 0.05 0.53 6.08 86.30 0.52 1.05 16 3 N -0.54 -7.29 4.86 -896.34 -4.35 -11.64 16 4 C 0.05 0.74 5.05 86.32 0.44 1.17 16 5 C -0.11 -1.64 6.09 30.65 0.19 -1.45 16 6 C -0.12 -2.09 4.88 30.70 0.15 -1.94 16 7 C -0.07 -0.97 1.94 -10.71 -0.02 -0.99 16 8 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 9 C -0.09 -1.45 1.92 -10.72 -0.02 -1.47 16 10 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 11 C -0.11 -1.37 4.85 30.62 0.15 -1.22 16 12 C -0.13 -1.88 6.08 30.67 0.19 -1.69 16 13 C 0.10 1.79 6.34 86.36 0.55 2.34 16 14 N -0.60 -15.86 2.97 -818.93 -2.43 -18.29 16 15 C 0.53 19.46 7.72 87.66 0.68 20.14 16 16 O -0.57 -25.23 15.28 -3.05 -0.05 -25.28 16 17 C -0.10 -4.10 4.50 71.24 0.32 -3.78 16 18 S -0.18 -9.20 18.55 -56.49 -1.05 -10.25 16 19 C -0.53 -30.95 10.04 67.95 0.68 -30.27 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.72 5.50 84.86 0.47 3.18 16 22 N -0.92 -55.89 13.97 21.65 0.30 -55.59 16 23 Si 0.91 45.47 27.74 68.60 1.90 47.37 16 24 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 27 C 0.12 2.61 5.20 86.36 0.45 3.06 16 28 C 0.06 0.86 3.74 86.32 0.32 1.19 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.63 6.51 -2.39 -0.02 0.62 16 31 H 0.05 0.60 6.68 -2.39 -0.02 0.58 16 32 H 0.08 0.75 8.06 -2.39 -0.02 0.73 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.03 0.42 6.76 -2.39 -0.02 0.40 16 35 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.15 6.72 -2.39 -0.02 1.14 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.83 6.38 -2.39 -0.02 0.81 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.69 5.93 -2.38 -0.01 1.67 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.11 3.97 7.69 -2.40 -0.02 3.95 16 47 H 0.11 4.01 7.94 -2.39 -0.02 3.99 16 48 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.07 1.94 5.69 -2.39 -0.01 1.93 16 51 H 0.03 0.43 6.61 -2.38 -0.02 0.41 16 52 H 0.09 1.01 6.43 -2.39 -0.02 0.99 16 Total: -1.00 -72.15 396.97 0.89 -71.26 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.84 Total: 14.50 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 5.72 Total: -12.09 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -6.49 Total: -85.52 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.05 Total: -25.28 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.05 Total: -10.25 kcal Total: -72.15 0.89 -71.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673496035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.837 kcal (2) G-P(sol) polarization free energy of solvation -72.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds