Wall clock time and date at job start Sat Apr 11 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.64582 * 2 1 4 4 C 1.54323 * 110.71741 * 236.85993 * 2 1 3 5 5 N 1.47021 * 107.27097 * 263.65413 * 4 2 1 6 6 C 1.34776 * 125.65152 * 181.02452 * 5 4 2 7 7 O 1.21280 * 120.00458 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99564 * 0.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47429 * 108.70411 * 1.28716 * 5 4 2 19 19 C 1.55132 * 104.72037 * 335.55463 * 18 5 4 20 20 H 1.09000 * 111.18965 * 279.19337 * 19 18 5 21 21 N 1.46896 * 110.93855 * 155.29226 * 19 18 5 22 22 C 1.46891 * 111.00413 * 92.95661 * 21 19 18 23 23 C 1.53003 * 109.47485 * 180.02562 * 22 21 19 24 24 C 1.52997 * 109.47293 * 180.02562 * 23 22 21 25 25 C 1.54263 * 110.02954 * 292.90497 * 24 23 22 26 26 C 1.54966 * 104.15974 * 217.13894 * 25 24 23 27 27 C 1.54889 * 102.77753 * 37.88676 * 26 25 24 28 28 C 1.53870 * 110.03290 * 175.68791 * 24 23 22 29 29 H 1.09003 * 109.47325 * 181.69101 * 1 2 3 30 30 H 1.09004 * 109.46802 * 301.68562 * 1 2 3 31 31 H 1.08999 * 109.47269 * 61.68129 * 1 2 3 32 32 H 1.09002 * 109.88568 * 144.23668 * 4 2 1 33 33 H 1.09003 * 109.88628 * 23.06771 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.36443 * 94.48240 * 18 5 4 38 38 H 1.09001 * 110.36590 * 216.81013 * 18 5 4 39 39 H 1.00900 * 111.00070 * 328.99772 * 21 19 18 40 40 H 1.09006 * 109.47151 * 300.00154 * 22 21 19 41 41 H 1.08998 * 109.47522 * 59.99690 * 22 21 19 42 42 H 1.09005 * 109.46403 * 300.00032 * 23 22 21 43 43 H 1.08998 * 109.47128 * 59.99284 * 23 22 21 44 44 H 1.08998 * 110.02318 * 54.29490 * 24 23 22 45 45 H 1.08999 * 110.48816 * 335.78284 * 25 24 23 46 46 H 1.09002 * 110.48771 * 98.42965 * 25 24 23 47 47 H 1.09010 * 110.71776 * 279.57540 * 26 25 24 48 48 H 1.09000 * 110.92739 * 156.29594 * 26 25 24 49 49 H 1.09001 * 110.48799 * 203.40813 * 27 26 25 50 50 H 1.09003 * 110.48386 * 80.76511 * 27 26 25 51 51 H 1.08999 * 110.03562 * 238.57121 * 28 24 23 52 52 H 1.09003 * 110.03640 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 -1.2086 5 7 2.3755 -2.1506 -0.7417 6 6 2.8900 -3.1436 -1.4939 7 8 3.0969 -4.2325 -1.0015 8 6 3.2084 -2.9008 -2.9467 9 16 3.8793 -4.4143 -3.6785 10 6 4.1534 -3.8608 -5.3287 11 1 3.9114 -2.8452 -5.6049 12 6 4.6803 -4.7302 -6.2738 13 7 4.9757 -5.9679 -5.9371 14 14 4.9715 -4.1433 -8.0231 15 1 4.5604 -2.7213 -8.1431 16 1 4.1719 -4.9702 -8.9623 17 1 6.4133 -4.2718 -8.3548 18 6 2.0139 -2.2518 0.6839 19 6 2.0828 -0.7949 1.2124 20 1 3.1096 -0.5045 1.4346 21 7 1.2231 -0.6229 2.3911 22 6 1.9807 -0.8378 3.6311 23 6 1.0537 -0.6510 4.8340 24 6 1.8429 -0.8742 6.1255 25 6 2.2725 -2.3519 6.2336 26 6 2.1432 -2.6749 7.7437 27 6 0.8681 -1.8964 8.1525 28 6 0.9507 -0.5844 7.3452 29 1 -0.3634 -1.0272 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3634 0.4875 -0.9047 32 1 2.9851 -0.3162 -1.5802 33 1 1.3250 -0.8248 -1.9980 34 1 3.9436 -2.1003 -3.0288 35 1 2.2989 -2.6145 -3.4750 36 1 4.8248 -6.2727 -5.0286 37 1 1.0050 -2.6497 0.7920 38 1 2.7296 -2.8810 1.2131 39 1 0.4216 -1.2341 2.3464 40 1 2.3857 -1.8497 3.6387 41 1 2.7981 -0.1189 3.6868 42 1 0.6484 0.3608 4.8265 43 1 0.2366 -1.3702 4.7781 44 1 2.7206 -0.2281 6.1430 45 1 1.6061 -2.9866 5.6495 46 1 3.3041 -2.4744 5.9034 47 1 3.0115 -2.3092 8.2920 48 1 2.0102 -3.7449 7.9029 49 1 0.8753 -1.6872 9.2222 50 1 -0.0255 -2.4573 7.8786 51 1 1.3957 0.2018 7.9550 52 1 -0.0445 -0.2843 7.0171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673849126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:35 Heat of formation + Delta-G solvation = -66.634649 kcal Electronic energy + Delta-G solvation = -27037.654799 eV Core-core repulsion = 23354.555916 eV Total energy + Delta-G solvation = -3683.098883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.24895 -38.99873 -37.95908 -35.54267 -32.82856 -32.53275 -31.53639 -30.01214 -29.11437 -27.95705 -26.68767 -25.92556 -24.81812 -23.06941 -22.46484 -21.00885 -20.21618 -19.72663 -19.39101 -18.24161 -16.99162 -16.47650 -16.22449 -16.04896 -15.50898 -15.21399 -14.79096 -14.64393 -14.39925 -14.15286 -13.85209 -13.74098 -13.46451 -13.24491 -13.07749 -12.92190 -12.82399 -12.60226 -12.41779 -12.15310 -11.94415 -11.85184 -11.75882 -11.51280 -11.44837 -11.36118 -11.31973 -11.03520 -10.96855 -10.93880 -10.90373 -10.77263 -10.66370 -10.21096 -9.59405 -9.54829 -9.01675 -8.80956 -8.54630 -8.22574 -6.68131 -6.62987 -4.00878 2.76468 2.94618 3.31847 3.40101 3.41610 3.54015 3.74954 4.16824 4.21704 4.22857 4.27475 4.31101 4.41438 4.64923 4.73931 4.84602 4.93187 4.95129 4.98988 5.04345 5.06158 5.20619 5.21801 5.22349 5.26590 5.31047 5.31809 5.37637 5.39030 5.43524 5.46869 5.53761 5.55932 5.60133 5.61783 5.70319 5.75662 5.76906 5.79265 5.80730 5.91278 5.91577 5.94102 6.01297 6.05834 6.13388 6.30884 6.65684 6.97545 7.57360 7.92784 8.43975 8.49603 9.26548 10.81082 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.001816 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.070174 B =15418.560126 C =16418.551831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.091 0.909 4 C 0.102 3.898 5 N -0.621 5.621 6 C 0.547 3.453 7 O -0.518 6.518 8 C -0.123 4.123 9 S -0.118 6.118 10 C -0.607 4.607 11 H 0.067 0.933 12 C 0.035 3.965 13 N -0.885 5.885 14 Si 1.090 2.910 15 H -0.288 1.288 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.084 3.916 19 C 0.079 3.921 20 H 0.093 0.907 21 N -0.672 5.672 22 C 0.054 3.946 23 C -0.109 4.109 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.120 4.120 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.278 0.722 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.343 0.657 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.062 0.938 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.127 15.980 25.266 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.109 0.891 4 C -0.022 4.022 5 N -0.359 5.359 6 C 0.335 3.665 7 O -0.392 6.392 8 C -0.274 4.274 9 S 0.108 5.892 10 C -0.755 4.755 11 H 0.085 0.915 12 C -0.175 4.175 13 N -0.519 5.519 14 Si 0.917 3.083 15 H -0.214 1.214 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.042 4.042 19 C -0.032 4.032 20 H 0.111 0.889 21 N -0.302 5.302 22 C -0.075 4.075 23 C -0.147 4.147 24 C -0.110 4.110 25 C -0.160 4.160 26 C -0.165 4.165 27 C -0.163 4.163 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.163 0.837 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.080 0.920 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.161 14.495 24.497 29.902 hybrid contribution -0.681 0.934 0.726 1.365 sum -9.842 15.429 25.223 31.163 Atomic orbital electron populations 1.21684 0.93742 1.01900 1.02205 1.22187 0.97003 0.99162 0.92626 0.89105 1.22200 1.00555 0.82167 0.97266 1.48331 1.64989 1.11998 1.10557 1.20025 0.75908 0.82873 0.87679 1.90705 1.51736 1.23417 1.73379 1.23282 1.04579 1.05859 0.93714 1.84820 1.82073 1.12235 1.10034 1.23757 1.53840 1.02755 0.95117 0.91510 1.26065 0.92940 0.93551 1.04988 1.70735 1.42694 1.16149 1.22360 0.83245 0.77043 0.74865 0.73183 1.21385 1.20872 1.20868 1.22910 1.00554 0.98049 0.82644 1.22832 0.97273 0.92911 0.90190 0.88879 1.60553 1.09744 1.59198 1.00738 1.22092 0.96612 0.99868 0.88893 1.21677 0.97859 1.02435 0.92686 1.21756 0.98244 0.96796 0.94247 1.22496 1.01325 0.95792 0.96338 1.22518 0.97866 0.99944 0.96130 1.22361 0.98166 0.96285 0.99508 1.22206 0.99877 0.97581 0.96149 0.93036 0.91067 0.92656 0.91188 0.91033 0.89023 0.89029 0.90932 0.91783 0.90759 0.83748 0.94767 0.90958 0.91088 0.91990 0.91018 0.91496 0.91724 0.91644 0.91696 0.91913 0.91732 0.91968 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.28 37.16 0.31 -0.77 16 2 C -0.09 -0.77 3.55 -88.79 -0.32 -1.08 16 3 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 4 C 0.10 1.12 6.07 -3.06 -0.02 1.11 16 5 N -0.62 -9.10 3.32 -170.38 -0.57 -9.66 16 6 C 0.55 10.79 7.87 -10.98 -0.09 10.70 16 7 O -0.52 -12.23 16.12 5.56 0.09 -12.14 16 8 C -0.12 -2.60 5.35 36.01 0.19 -2.40 16 9 S -0.12 -3.24 19.60 -107.50 -2.11 -5.35 16 10 C -0.61 -17.68 9.50 30.94 0.29 -17.39 16 11 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 12 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 13 N -0.89 -27.76 13.67 55.49 0.76 -27.01 16 14 Si 1.09 25.21 29.92 -169.99 -5.09 20.13 16 15 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.08 1.00 6.19 -2.41 -0.01 0.99 16 19 C 0.08 0.71 3.19 -65.45 -0.21 0.50 16 20 H 0.09 0.87 7.83 -51.93 -0.41 0.46 16 21 N -0.67 -4.96 5.34 -104.34 -0.56 -5.52 16 22 C 0.05 0.38 5.39 -3.83 -0.02 0.36 16 23 C -0.11 -0.65 4.60 -26.73 -0.12 -0.77 16 24 C -0.09 -0.54 2.93 -89.51 -0.26 -0.80 16 25 C -0.12 -0.78 5.50 -25.03 -0.14 -0.92 16 26 C -0.13 -0.76 6.91 -24.70 -0.17 -0.94 16 27 C -0.13 -0.71 6.83 -25.07 -0.17 -0.88 16 28 C -0.12 -0.67 6.46 -25.62 -0.17 -0.84 16 29 H 0.05 0.44 7.44 -51.93 -0.39 0.06 16 30 H 0.07 0.52 7.65 -51.93 -0.40 0.12 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 35 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 36 H 0.28 8.93 7.13 -40.82 -0.29 8.64 16 37 H 0.06 0.74 7.33 -51.93 -0.38 0.36 16 38 H 0.07 1.00 8.03 -51.93 -0.42 0.59 16 39 H 0.34 2.43 7.83 -39.29 -0.31 2.12 16 40 H 0.03 0.26 7.48 -51.93 -0.39 -0.12 16 41 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.38 8.02 -51.93 -0.42 -0.04 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.46 7.77 -51.93 -0.40 0.06 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.06 0.35 7.67 -51.93 -0.40 -0.04 16 LS Contribution 417.15 15.07 6.29 6.29 Total: -1.00 -34.14 417.15 -11.90 -46.04 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -9.72 Total: -0.58 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.00 Total: -12.21 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.36 Total: -42.18 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.09 Total: 20.13 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.11 Total: -5.35 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.14 -11.90 -46.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673849126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.595 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds