Wall clock time and date at job start Sat Apr 11 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.64582 * 2 1 4 4 C 1.54323 * 110.71741 * 236.85993 * 2 1 3 5 5 N 1.47021 * 107.27097 * 263.65413 * 4 2 1 6 6 C 1.34776 * 125.65152 * 181.02452 * 5 4 2 7 7 O 1.21280 * 120.00458 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99564 * 0.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47429 * 108.70411 * 1.28716 * 5 4 2 19 19 C 1.55132 * 104.72037 * 335.55463 * 18 5 4 20 20 H 1.09000 * 111.18965 * 279.19337 * 19 18 5 21 21 N 1.46896 * 110.93855 * 155.29226 * 19 18 5 22 22 C 1.46891 * 111.00413 * 92.95661 * 21 19 18 23 23 C 1.53003 * 109.47485 * 180.02562 * 22 21 19 24 24 C 1.52997 * 109.47293 * 180.02562 * 23 22 21 25 25 C 1.54263 * 110.02954 * 292.90497 * 24 23 22 26 26 C 1.54966 * 104.15974 * 217.13894 * 25 24 23 27 27 C 1.54889 * 102.77753 * 37.88676 * 26 25 24 28 28 C 1.53870 * 110.03290 * 175.68791 * 24 23 22 29 29 H 1.09003 * 109.47325 * 181.69101 * 1 2 3 30 30 H 1.09004 * 109.46802 * 301.68562 * 1 2 3 31 31 H 1.08999 * 109.47269 * 61.68129 * 1 2 3 32 32 H 1.09002 * 109.88568 * 144.23668 * 4 2 1 33 33 H 1.09003 * 109.88628 * 23.06771 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.36443 * 94.48240 * 18 5 4 38 38 H 1.09001 * 110.36590 * 216.81013 * 18 5 4 39 39 H 1.00900 * 111.00070 * 328.99772 * 21 19 18 40 40 H 1.09006 * 109.47151 * 300.00154 * 22 21 19 41 41 H 1.08998 * 109.47522 * 59.99690 * 22 21 19 42 42 H 1.09005 * 109.46403 * 300.00032 * 23 22 21 43 43 H 1.08998 * 109.47128 * 59.99284 * 23 22 21 44 44 H 1.08998 * 110.02318 * 54.29490 * 24 23 22 45 45 H 1.08999 * 110.48816 * 335.78284 * 25 24 23 46 46 H 1.09002 * 110.48771 * 98.42965 * 25 24 23 47 47 H 1.09010 * 110.71776 * 279.57540 * 26 25 24 48 48 H 1.09000 * 110.92739 * 156.29594 * 26 25 24 49 49 H 1.09001 * 110.48799 * 203.40813 * 27 26 25 50 50 H 1.09003 * 110.48386 * 80.76511 * 27 26 25 51 51 H 1.08999 * 110.03562 * 238.57121 * 28 24 23 52 52 H 1.09003 * 110.03640 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 -1.2086 5 7 2.3755 -2.1506 -0.7417 6 6 2.8900 -3.1436 -1.4939 7 8 3.0969 -4.2325 -1.0015 8 6 3.2084 -2.9008 -2.9467 9 16 3.8793 -4.4143 -3.6785 10 6 4.1534 -3.8608 -5.3287 11 1 3.9114 -2.8452 -5.6049 12 6 4.6803 -4.7302 -6.2738 13 7 4.9757 -5.9679 -5.9371 14 14 4.9715 -4.1433 -8.0231 15 1 4.5604 -2.7213 -8.1431 16 1 4.1719 -4.9702 -8.9623 17 1 6.4133 -4.2718 -8.3548 18 6 2.0139 -2.2518 0.6839 19 6 2.0828 -0.7949 1.2124 20 1 3.1096 -0.5045 1.4346 21 7 1.2231 -0.6229 2.3911 22 6 1.9807 -0.8378 3.6311 23 6 1.0537 -0.6510 4.8340 24 6 1.8429 -0.8742 6.1255 25 6 2.2725 -2.3519 6.2336 26 6 2.1432 -2.6749 7.7437 27 6 0.8681 -1.8964 8.1525 28 6 0.9507 -0.5844 7.3452 29 1 -0.3634 -1.0272 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3634 0.4875 -0.9047 32 1 2.9851 -0.3162 -1.5802 33 1 1.3250 -0.8248 -1.9980 34 1 3.9436 -2.1003 -3.0288 35 1 2.2989 -2.6145 -3.4750 36 1 4.8248 -6.2727 -5.0286 37 1 1.0050 -2.6497 0.7920 38 1 2.7296 -2.8810 1.2131 39 1 0.4216 -1.2341 2.3464 40 1 2.3857 -1.8497 3.6387 41 1 2.7981 -0.1189 3.6868 42 1 0.6484 0.3608 4.8265 43 1 0.2366 -1.3702 4.7781 44 1 2.7206 -0.2281 6.1430 45 1 1.6061 -2.9866 5.6495 46 1 3.3041 -2.4744 5.9034 47 1 3.0115 -2.3092 8.2920 48 1 2.0102 -3.7449 7.9029 49 1 0.8753 -1.6872 9.2222 50 1 -0.0255 -2.4573 7.8786 51 1 1.3957 0.2018 7.9550 52 1 -0.0445 -0.2843 7.0171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673849126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:32 Heat of formation + Delta-G solvation = -86.861406 kcal Electronic energy + Delta-G solvation = -27038.531897 eV Core-core repulsion = 23354.555916 eV Total energy + Delta-G solvation = -3683.975981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.38747 -39.64853 -39.08839 -36.35510 -34.77384 -33.79167 -32.20116 -31.41541 -29.60057 -28.92008 -27.53735 -27.13950 -26.55665 -24.03500 -23.04413 -21.48713 -21.00827 -20.85904 -20.34525 -20.05580 -18.31974 -17.57057 -17.19225 -16.77913 -16.60844 -16.18830 -15.97022 -15.71159 -15.69671 -15.34495 -15.18520 -14.62749 -14.32484 -14.24104 -14.18564 -14.08764 -13.86032 -13.71598 -13.56725 -13.43063 -13.17586 -13.04873 -12.77308 -12.32576 -12.12514 -11.99510 -11.94664 -11.93504 -11.87447 -11.65526 -11.60275 -11.52974 -11.47595 -11.33254 -11.17274 -11.13586 -11.11215 -10.35990 -9.86452 -9.42680 -8.95284 -8.91612 -6.31153 1.09855 1.39504 1.50220 1.61191 1.77471 1.92343 2.31242 2.97531 3.00301 3.09988 3.38599 3.51045 3.70996 3.74840 3.75806 3.87963 3.90924 4.04902 4.12887 4.17034 4.22340 4.27368 4.33977 4.48364 4.52013 4.57350 4.62724 4.66359 4.67860 4.73138 4.75836 4.78627 4.81020 4.89935 4.91453 4.98590 5.05962 5.08371 5.21262 5.23460 5.25921 5.27271 5.29290 5.41523 5.48184 5.50817 5.57464 5.62457 5.97292 6.12096 6.24216 6.34878 6.94659 7.03854 8.48170 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.001816 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.070174 B =15418.560126 C =16418.551831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 H 0.112 0.888 4 C 0.091 3.909 5 N -0.610 5.610 6 C 0.544 3.456 7 O -0.569 6.569 8 C -0.099 4.099 9 S -0.196 6.196 10 C -0.613 4.613 11 H 0.075 0.925 12 C -0.019 4.019 13 N -0.913 5.913 14 Si 1.143 2.857 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.080 3.920 19 C 0.093 3.907 20 H 0.094 0.906 21 N -0.662 5.662 22 C 0.056 3.944 23 C -0.100 4.100 24 C -0.089 4.089 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.119 4.119 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.347 0.653 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 19.232 25.363 33.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 H 0.130 0.870 4 C -0.031 4.031 5 N -0.345 5.345 6 C 0.332 3.668 7 O -0.448 6.448 8 C -0.250 4.250 9 S 0.031 5.969 10 C -0.760 4.760 11 H 0.094 0.906 12 C -0.222 4.222 13 N -0.548 5.548 14 Si 0.960 3.040 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.045 4.045 19 C -0.019 4.019 20 H 0.112 0.888 21 N -0.292 5.292 22 C -0.073 4.073 23 C -0.138 4.138 24 C -0.108 4.108 25 C -0.161 4.161 26 C -0.166 4.166 27 C -0.163 4.163 28 C -0.157 4.157 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.167 0.833 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.259 17.810 24.644 32.090 hybrid contribution -0.416 -0.003 0.845 0.941 sum -10.675 17.808 25.488 32.874 Atomic orbital electron populations 1.21662 0.92958 1.01473 1.03032 1.22189 0.97491 0.99479 0.90657 0.86976 1.22569 1.01486 0.80237 0.98820 1.48274 1.62562 1.12326 1.11345 1.19766 0.76416 0.83204 0.87419 1.90684 1.54413 1.25655 1.74068 1.23142 1.05166 1.02215 0.94507 1.85068 1.83176 1.17714 1.10971 1.24074 1.53324 1.03129 0.95487 0.90633 1.27876 0.91887 0.92931 1.09496 1.70861 1.44854 1.17678 1.21433 0.82644 0.77561 0.75856 0.67909 1.18618 1.19936 1.19928 1.23150 1.00148 1.00293 0.80893 1.22735 0.97797 0.90424 0.90951 0.88822 1.60609 1.09457 1.58893 1.00281 1.22097 0.96837 0.99297 0.89062 1.21588 0.97502 1.02520 0.92148 1.21735 0.98350 0.96241 0.94486 1.22492 1.00810 0.96229 0.96591 1.22537 0.98279 1.00017 0.95812 1.22370 0.97767 0.96245 0.99949 1.22203 0.99961 0.97611 0.95922 0.94085 0.90158 0.91937 0.90170 0.90293 0.87304 0.87373 0.92867 0.91167 0.92741 0.83297 0.95791 0.90867 0.90771 0.92040 0.91014 0.92166 0.92325 0.91468 0.91840 0.91288 0.91856 0.91527 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.28 71.98 0.60 -1.07 16 2 C -0.08 -1.09 3.55 -9.61 -0.03 -1.12 16 3 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.09 1.77 6.07 86.73 0.53 2.30 16 5 N -0.61 -17.25 3.32 -811.33 -2.70 -19.95 16 6 C 0.54 21.56 7.87 87.66 0.69 22.25 16 7 O -0.57 -27.85 16.12 -3.03 -0.05 -27.90 16 8 C -0.10 -4.12 5.35 71.24 0.38 -3.74 16 9 S -0.20 -11.07 19.60 -56.49 -1.11 -12.18 16 10 C -0.61 -35.79 9.50 67.95 0.65 -35.14 16 11 H 0.08 4.14 7.80 -2.91 -0.02 4.12 16 12 C -0.02 -1.10 5.49 84.86 0.47 -0.64 16 13 N -0.91 -58.53 13.67 21.65 0.30 -58.23 16 14 Si 1.14 49.69 29.92 68.60 2.05 51.75 16 15 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.08 1.86 6.19 86.93 0.54 2.40 16 19 C 0.09 1.45 3.19 46.39 0.15 1.60 16 20 H 0.09 1.53 7.83 -2.39 -0.02 1.51 16 21 N -0.66 -8.32 5.34 -484.03 -2.58 -10.90 16 22 C 0.06 0.69 5.39 86.31 0.47 1.16 16 23 C -0.10 -1.03 4.60 30.59 0.14 -0.89 16 24 C -0.09 -0.95 2.93 -10.07 -0.03 -0.98 16 25 C -0.12 -1.54 5.50 31.69 0.17 -1.37 16 26 C -0.13 -1.48 6.91 31.91 0.22 -1.26 16 27 C -0.13 -1.28 6.83 31.67 0.22 -1.06 16 28 C -0.12 -1.15 6.46 31.32 0.20 -0.95 16 29 H 0.04 0.60 7.44 -2.39 -0.02 0.58 16 30 H 0.08 0.89 7.65 -2.38 -0.02 0.87 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.48 7.84 -2.39 -0.02 1.46 16 34 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 35 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 36 H 0.26 17.41 7.13 -92.70 -0.66 16.75 16 37 H 0.07 1.57 7.33 -2.39 -0.02 1.55 16 38 H 0.05 1.50 8.03 -2.39 -0.02 1.48 16 39 H 0.35 4.18 7.83 -89.69 -0.70 3.48 16 40 H 0.02 0.35 7.48 -2.38 -0.02 0.34 16 41 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 42 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.06 0.66 8.02 -2.39 -0.02 0.64 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.82 7.77 -2.39 -0.02 0.80 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.07 0.62 7.67 -2.39 -0.02 0.60 16 Total: -1.00 -76.30 417.15 1.54 -74.76 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.28 Total: 21.15 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 5.35 Total: -18.51 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -4.98 Total: -89.08 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.75 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -1.11 Total: -12.18 kcal Total: -76.30 1.54 -74.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673849126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.098 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds