Wall clock time and date at job start Sat Apr 11 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30370 * 125.97017 * 2 1 4 4 N 1.39916 * 109.02735 * 180.28371 * 3 2 1 5 5 C 1.46495 * 125.75023 * 179.73507 * 4 3 2 6 6 C 1.34418 * 108.51135 * 359.71429 * 4 3 2 7 7 F 1.35098 * 126.34688 * 179.97438 * 6 4 3 8 8 C 1.38504 * 107.31019 * 359.97438 * 6 4 3 9 9 C 1.47165 * 126.45743 * 180.02562 * 8 6 4 10 10 O 1.21630 * 120.00698 * 90.02169 * 9 8 6 11 11 N 1.34782 * 119.99664 * 270.02078 * 9 8 6 12 12 C 1.46498 * 119.99947 * 0.02562 * 11 9 8 13 13 C 1.46501 * 119.99977 * 180.02562 * 11 9 8 14 14 C 1.53000 * 109.47067 * 269.99925 * 13 11 9 15 15 C 1.53000 * 109.47214 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47446 * 305.00593 * 15 14 13 17 17 N 1.46506 * 109.46808 * 65.00388 * 15 14 13 18 18 C 1.36938 * 119.99589 * 205.00092 * 17 15 14 19 19 H 1.07999 * 120.00325 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99408 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00325 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99550 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47239 * 120.00535 * 22 20 18 25 25 H 1.48501 * 109.46793 * 240.00116 * 22 20 18 26 26 C 1.52995 * 109.47146 * 184.99844 * 15 14 13 27 27 C 1.53006 * 109.47051 * 60.00598 * 26 15 14 28 28 C 1.53004 * 109.47466 * 180.02562 * 26 15 14 29 29 H 1.09004 * 109.47084 * 270.18852 * 1 2 3 30 30 H 1.08999 * 109.47211 * 30.18778 * 1 2 3 31 31 H 1.09001 * 109.46979 * 150.18705 * 1 2 3 32 32 H 1.09003 * 109.47233 * 269.98128 * 5 4 3 33 33 H 1.09003 * 109.46635 * 29.97083 * 5 4 3 34 34 H 1.08989 * 109.47802 * 149.97574 * 5 4 3 35 35 H 1.09007 * 109.46994 * 269.99806 * 12 11 9 36 36 H 1.08996 * 109.46968 * 29.99980 * 12 11 9 37 37 H 1.08996 * 109.47153 * 150.00032 * 12 11 9 38 38 H 1.08994 * 109.47071 * 150.00121 * 13 11 9 39 39 H 1.09003 * 109.47280 * 30.00004 * 13 11 9 40 40 H 1.09004 * 109.46980 * 60.00176 * 14 13 11 41 41 H 1.09003 * 109.47135 * 300.00167 * 14 13 11 42 42 H 0.96995 * 120.00050 * 24.72300 * 17 15 14 43 43 H 0.97000 * 119.99693 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47311 * 300.00221 * 26 15 14 45 45 H 1.08999 * 109.46872 * 59.99661 * 27 26 15 46 46 H 1.09002 * 109.46739 * 180.02562 * 27 26 15 47 47 H 1.08999 * 109.46714 * 299.99418 * 27 26 15 48 48 H 1.09002 * 109.46510 * 59.99723 * 28 26 15 49 49 H 1.08993 * 109.47425 * 179.97438 * 28 26 15 50 50 H 1.08999 * 109.47176 * 300.00779 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6111 0.6474 -0.0065 5 6 4.7763 1.5353 -0.0141 6 6 3.6480 -0.6963 -0.0042 7 9 4.7576 -1.4669 -0.0094 8 6 2.3375 -1.1445 0.0043 9 6 1.8930 -2.5474 0.0101 10 8 1.7150 -3.1247 1.0658 11 7 1.6832 -3.1926 -1.1545 12 6 1.8981 -2.4974 -2.4260 13 6 1.2402 -4.5890 -1.1488 14 6 2.4610 -5.5113 -1.1529 15 6 1.9984 -6.9697 -1.1464 16 1 1.3313 -7.1355 -0.3005 17 7 1.2876 -7.2621 -2.3936 18 6 0.3633 -8.2716 -2.4343 19 1 0.1586 -8.8525 -1.5471 20 6 -0.3106 -8.5483 -3.6159 21 7 -0.0608 -7.8407 -4.6972 22 14 -1.5710 -9.9259 -3.6717 23 1 -1.6660 -10.5643 -2.3343 24 1 -2.8952 -9.3703 -4.0496 25 1 -1.1541 -10.9379 -4.6753 26 6 3.2146 -7.8899 -1.0248 27 6 3.9570 -7.5846 0.2778 28 6 2.7522 -9.3484 -1.0188 29 1 -0.3633 0.0034 1.0277 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5109 32 1 5.0600 1.7537 -1.0437 33 1 4.5284 2.4644 0.4992 34 1 5.6073 1.0487 0.4963 35 1 0.9718 -2.0143 -2.7371 36 1 2.6765 -1.7447 -2.3015 37 1 2.2058 -3.2161 -3.1855 38 1 0.6361 -4.7821 -2.0352 39 1 0.6452 -4.7778 -0.2553 40 1 3.0653 -5.3182 -0.2665 41 1 3.0560 -5.3225 -2.0465 42 1 1.4688 -6.7380 -3.1894 43 1 -0.5320 -8.0339 -5.5228 44 1 3.8818 -7.7241 -1.8707 45 1 3.2899 -7.7504 1.1237 46 1 4.8238 -8.2399 0.3642 47 1 4.2866 -6.5456 0.2731 48 1 2.2235 -9.5656 -1.9470 49 1 3.6186 -10.0039 -0.9327 50 1 2.0848 -9.5145 -0.1732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675139625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:52 Heat of formation + Delta-G solvation = 6.035788 kcal Electronic energy + Delta-G solvation = -30818.451300 eV Core-core repulsion = 26604.583219 eV Total energy + Delta-G solvation = -4213.868081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.55326 -41.66814 -39.39599 -37.28341 -35.32104 -34.48970 -33.00824 -31.64351 -30.60835 -29.89370 -29.35735 -26.88185 -26.67827 -26.04465 -25.03937 -23.24099 -22.26496 -21.19167 -20.73228 -19.39242 -19.09735 -17.87686 -17.24679 -17.12554 -16.71500 -16.32610 -15.97904 -15.01110 -14.99373 -14.92535 -14.41215 -13.94399 -13.90275 -13.76224 -13.68916 -13.52424 -13.43579 -13.18895 -12.92794 -12.74397 -12.68181 -12.56074 -12.41859 -12.16066 -11.90145 -11.61799 -11.52498 -11.16119 -11.14680 -10.89480 -10.74125 -10.43233 -10.22236 -10.19062 -9.99669 -9.92736 -9.70336 -9.64097 -9.38993 -8.94040 -8.84191 -8.42758 -6.89259 -5.73744 -3.00101 1.08617 1.60963 2.00815 2.56825 3.22528 3.44843 3.52134 3.53038 3.55052 4.02274 4.45245 4.62780 4.63513 4.71384 4.78863 4.91668 4.98390 5.20511 5.36190 5.37302 5.45452 5.49638 5.53902 5.58561 5.59981 5.71241 5.76149 5.78649 5.91139 6.02751 6.06447 6.19425 6.21935 6.28491 6.36535 6.37653 6.48918 6.51320 6.63003 6.74887 6.81598 6.88611 6.93795 7.07127 7.23166 7.39291 7.52005 7.76929 8.27150 8.45393 9.56879 10.14687 10.50389 11.49042 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.002833 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.785015 B = 9880.689948 C =10900.526755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.133 3.867 3 N -0.272 5.272 4 N -0.376 5.376 5 C 0.093 3.907 6 C 0.289 3.711 7 F -0.088 7.088 8 C -0.279 4.279 9 C 0.592 3.408 10 O -0.528 6.528 11 N -0.601 5.601 12 C 0.083 3.917 13 C 0.119 3.881 14 C -0.136 4.136 15 C 0.185 3.815 16 H 0.049 0.951 17 N -0.722 5.722 18 C -0.225 4.225 19 H 0.072 0.928 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.294 1.294 26 C -0.109 4.109 27 C -0.146 4.146 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.382 0.618 43 H 0.253 0.747 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.028 0.972 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 19.407 7.500 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.095 5.095 4 N -0.161 5.161 5 C -0.047 4.047 6 C 0.142 3.858 7 F -0.067 7.067 8 C -0.295 4.295 9 C 0.378 3.622 10 O -0.404 6.404 11 N -0.333 5.333 12 C -0.060 4.060 13 C -0.002 4.002 14 C -0.175 4.175 15 C 0.074 3.926 16 H 0.067 0.933 17 N -0.363 5.363 18 C -0.357 4.357 19 H 0.090 0.910 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.731 3.269 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.131 4.131 27 C -0.204 4.204 28 C -0.197 4.197 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.216 0.784 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.047 0.953 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.865 20.269 8.082 23.553 hybrid contribution 0.040 -1.549 -0.511 1.632 sum 8.905 18.720 7.571 22.069 Atomic orbital electron populations 1.20336 0.85103 1.04183 1.04114 1.22203 0.97229 0.87952 0.96004 1.77298 0.84099 1.21153 1.26944 1.48654 1.07286 1.02562 1.57606 1.22057 0.83669 0.94658 1.04338 1.17775 0.83396 0.81810 1.02826 1.91670 1.49653 1.71552 1.93803 1.19751 0.90302 0.95932 1.23512 1.17081 0.77481 0.83815 0.83866 1.90802 1.51177 1.67610 1.30804 1.47941 1.66371 1.13460 1.05553 1.21726 1.01096 0.97552 0.85666 1.21647 0.97049 0.77120 1.04388 1.22217 0.97603 0.96148 1.01573 1.20219 0.91750 0.89762 0.90839 0.93327 1.42469 1.46038 1.39991 1.07781 1.19273 1.12602 1.08236 0.95549 0.90994 1.24682 1.00597 0.99795 0.96038 1.69656 1.45559 1.42420 1.00670 0.86219 0.81462 0.81941 0.77258 1.20589 1.22049 1.22088 1.21741 0.98183 0.97173 0.95998 1.21925 0.99559 1.00430 0.98491 1.21832 0.99405 0.94909 1.03562 0.89421 0.89867 0.89725 0.89776 0.88166 0.89054 0.92388 0.92219 0.90265 0.88771 0.90031 0.91706 0.92358 0.78448 0.93757 0.92382 0.93240 0.93977 0.93195 0.89595 0.95295 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.28 36.00 0.37 -0.34 16 2 C 0.13 1.55 7.26 -82.01 -0.60 0.95 16 3 N -0.27 -3.10 12.49 33.91 0.42 -2.67 16 4 N -0.38 -3.81 3.98 -67.94 -0.27 -4.08 16 5 C 0.09 0.49 11.43 59.84 0.68 1.18 16 6 C 0.29 3.49 8.37 -16.32 -0.14 3.35 16 7 F -0.09 -1.05 17.31 2.25 0.04 -1.01 16 8 C -0.28 -3.72 4.13 -104.97 -0.43 -4.16 16 9 C 0.59 9.32 7.22 -12.63 -0.09 9.23 16 10 O -0.53 -10.16 16.69 5.25 0.09 -10.07 16 11 N -0.60 -8.79 2.87 -182.95 -0.53 -9.32 16 12 C 0.08 0.97 10.26 59.85 0.61 1.59 16 13 C 0.12 1.99 5.29 -4.04 -0.02 1.97 16 14 C -0.14 -2.32 4.86 -26.73 -0.13 -2.45 16 15 C 0.18 3.60 2.02 -67.93 -0.14 3.46 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 N -0.72 -16.81 4.45 -53.42 -0.24 -17.05 16 18 C -0.23 -5.87 7.57 -15.06 -0.11 -5.99 16 19 H 0.07 1.87 7.39 -52.49 -0.39 1.48 16 20 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -27.03 13.06 55.49 0.72 -26.30 16 22 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C -0.11 -2.00 2.69 -90.62 -0.24 -2.24 16 27 C -0.15 -2.29 8.85 37.16 0.33 -1.96 16 28 C -0.14 -2.67 8.26 37.16 0.31 -2.37 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.64 6.62 -51.93 -0.34 0.30 16 37 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.09 1.69 7.68 -51.93 -0.40 1.29 16 39 H 0.08 1.48 7.42 -51.93 -0.39 1.09 16 40 H 0.06 1.11 6.17 -51.93 -0.32 0.79 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.38 9.46 7.80 -40.82 -0.32 9.14 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.75 6.32 -51.93 -0.33 0.43 16 48 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 411.30 15.07 6.20 6.20 Total: -1.00 -32.10 411.30 -6.54 -38.64 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.26 Total: 7.02 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 0.30 Total: 1.69 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.11 Total: -59.42 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.10 -6.54 -38.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675139625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.672 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds