Wall clock time and date at job start Sat Apr 11 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30370 * 125.97017 * 2 1 4 4 N 1.39916 * 109.02735 * 180.28371 * 3 2 1 5 5 C 1.46495 * 125.75023 * 179.73507 * 4 3 2 6 6 C 1.34418 * 108.51135 * 359.71429 * 4 3 2 7 7 F 1.35098 * 126.34688 * 179.97438 * 6 4 3 8 8 C 1.38504 * 107.31019 * 359.97438 * 6 4 3 9 9 C 1.47165 * 126.45743 * 180.02562 * 8 6 4 10 10 O 1.21630 * 120.00698 * 90.02169 * 9 8 6 11 11 N 1.34782 * 119.99664 * 270.02078 * 9 8 6 12 12 C 1.46498 * 119.99947 * 0.02562 * 11 9 8 13 13 C 1.46501 * 119.99977 * 180.02562 * 11 9 8 14 14 C 1.53000 * 109.47067 * 269.99925 * 13 11 9 15 15 C 1.53000 * 109.47214 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47446 * 305.00593 * 15 14 13 17 17 N 1.46506 * 109.46808 * 65.00388 * 15 14 13 18 18 C 1.36938 * 119.99589 * 205.00092 * 17 15 14 19 19 H 1.07999 * 120.00325 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99408 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00325 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99550 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47239 * 120.00535 * 22 20 18 25 25 H 1.48501 * 109.46793 * 240.00116 * 22 20 18 26 26 C 1.52995 * 109.47146 * 184.99844 * 15 14 13 27 27 C 1.53006 * 109.47051 * 60.00598 * 26 15 14 28 28 C 1.53004 * 109.47466 * 180.02562 * 26 15 14 29 29 H 1.09004 * 109.47084 * 270.18852 * 1 2 3 30 30 H 1.08999 * 109.47211 * 30.18778 * 1 2 3 31 31 H 1.09001 * 109.46979 * 150.18705 * 1 2 3 32 32 H 1.09003 * 109.47233 * 269.98128 * 5 4 3 33 33 H 1.09003 * 109.46635 * 29.97083 * 5 4 3 34 34 H 1.08989 * 109.47802 * 149.97574 * 5 4 3 35 35 H 1.09007 * 109.46994 * 269.99806 * 12 11 9 36 36 H 1.08996 * 109.46968 * 29.99980 * 12 11 9 37 37 H 1.08996 * 109.47153 * 150.00032 * 12 11 9 38 38 H 1.08994 * 109.47071 * 150.00121 * 13 11 9 39 39 H 1.09003 * 109.47280 * 30.00004 * 13 11 9 40 40 H 1.09004 * 109.46980 * 60.00176 * 14 13 11 41 41 H 1.09003 * 109.47135 * 300.00167 * 14 13 11 42 42 H 0.96995 * 120.00050 * 24.72300 * 17 15 14 43 43 H 0.97000 * 119.99693 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47311 * 300.00221 * 26 15 14 45 45 H 1.08999 * 109.46872 * 59.99661 * 27 26 15 46 46 H 1.09002 * 109.46739 * 180.02562 * 27 26 15 47 47 H 1.08999 * 109.46714 * 299.99418 * 27 26 15 48 48 H 1.09002 * 109.46510 * 59.99723 * 28 26 15 49 49 H 1.08993 * 109.47425 * 179.97438 * 28 26 15 50 50 H 1.08999 * 109.47176 * 300.00779 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6111 0.6474 -0.0065 5 6 4.7763 1.5353 -0.0141 6 6 3.6480 -0.6963 -0.0042 7 9 4.7576 -1.4669 -0.0094 8 6 2.3375 -1.1445 0.0043 9 6 1.8930 -2.5474 0.0101 10 8 1.7150 -3.1247 1.0658 11 7 1.6832 -3.1926 -1.1545 12 6 1.8981 -2.4974 -2.4260 13 6 1.2402 -4.5890 -1.1488 14 6 2.4610 -5.5113 -1.1529 15 6 1.9984 -6.9697 -1.1464 16 1 1.3313 -7.1355 -0.3005 17 7 1.2876 -7.2621 -2.3936 18 6 0.3633 -8.2716 -2.4343 19 1 0.1586 -8.8525 -1.5471 20 6 -0.3106 -8.5483 -3.6159 21 7 -0.0608 -7.8407 -4.6972 22 14 -1.5710 -9.9259 -3.6717 23 1 -1.6660 -10.5643 -2.3343 24 1 -2.8952 -9.3703 -4.0496 25 1 -1.1541 -10.9379 -4.6753 26 6 3.2146 -7.8899 -1.0248 27 6 3.9570 -7.5846 0.2778 28 6 2.7522 -9.3484 -1.0188 29 1 -0.3633 0.0034 1.0277 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5109 32 1 5.0600 1.7537 -1.0437 33 1 4.5284 2.4644 0.4992 34 1 5.6073 1.0487 0.4963 35 1 0.9718 -2.0143 -2.7371 36 1 2.6765 -1.7447 -2.3015 37 1 2.2058 -3.2161 -3.1855 38 1 0.6361 -4.7821 -2.0352 39 1 0.6452 -4.7778 -0.2553 40 1 3.0653 -5.3182 -0.2665 41 1 3.0560 -5.3225 -2.0465 42 1 1.4688 -6.7380 -3.1894 43 1 -0.5320 -8.0339 -5.5228 44 1 3.8818 -7.7241 -1.8707 45 1 3.2899 -7.7504 1.1237 46 1 4.8238 -8.2399 0.3642 47 1 4.2866 -6.5456 0.2731 48 1 2.2235 -9.5656 -1.9470 49 1 3.6186 -10.0039 -0.9327 50 1 2.0848 -9.5145 -0.1732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675139625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:47 Heat of formation + Delta-G solvation = -13.243465 kcal Electronic energy + Delta-G solvation = -30819.287311 eV Core-core repulsion = 26604.583219 eV Total energy + Delta-G solvation = -4214.704092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -50.47525 -42.55040 -40.62879 -38.86571 -36.62561 -35.24119 -34.89683 -33.06404 -31.82058 -31.11864 -30.40314 -28.15380 -27.66625 -27.33995 -26.36350 -24.92302 -23.45151 -22.43927 -21.70491 -20.78561 -20.37932 -19.09660 -18.82351 -18.18694 -17.70141 -17.26015 -17.18301 -16.79242 -16.17665 -15.76778 -15.74966 -15.48319 -15.23505 -14.99402 -14.89390 -14.50443 -14.46835 -14.32465 -14.08581 -13.91944 -13.67460 -13.53687 -13.30044 -13.26764 -13.04749 -13.00496 -12.95932 -12.85543 -12.72737 -12.49891 -12.18474 -12.05062 -11.95677 -11.70448 -11.69632 -11.40707 -11.21979 -11.05269 -10.78523 -10.43136 -9.86881 -9.69797 -8.86348 -7.84261 -5.08580 0.19792 0.85932 1.10314 1.37815 1.49301 1.51663 1.59246 2.05662 2.62581 2.72022 3.20974 3.48672 3.67835 3.74541 3.93809 3.96865 4.08717 4.20684 4.22751 4.23680 4.28059 4.30753 4.44429 4.49600 4.58838 4.64686 4.69271 4.70142 4.74742 4.75010 4.80392 4.86183 4.86994 4.93764 5.05559 5.12588 5.18302 5.20983 5.28678 5.35610 5.43099 5.53033 5.60694 5.63220 5.69584 5.78163 6.22283 6.33130 6.38399 7.05139 7.45828 8.19696 8.45946 9.39238 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.002833 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.785015 B = 9880.689948 C =10900.526755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.130 3.870 3 N -0.277 5.277 4 N -0.366 5.366 5 C 0.080 3.920 6 C 0.288 3.712 7 F -0.089 7.089 8 C -0.303 4.303 9 C 0.595 3.405 10 O -0.571 6.571 11 N -0.598 5.598 12 C 0.082 3.918 13 C 0.129 3.871 14 C -0.121 4.121 15 C 0.185 3.815 16 H 0.036 0.964 17 N -0.726 5.726 18 C -0.209 4.209 19 H 0.071 0.929 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.954 3.046 23 H -0.271 1.271 24 H -0.298 1.298 25 H -0.299 1.299 26 C -0.106 4.106 27 C -0.138 4.138 28 C -0.135 4.135 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.374 0.626 43 H 0.247 0.753 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.132 20.739 8.179 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 N -0.101 5.101 4 N -0.150 5.150 5 C -0.058 4.058 6 C 0.139 3.861 7 F -0.068 7.068 8 C -0.319 4.319 9 C 0.382 3.618 10 O -0.450 6.450 11 N -0.329 5.329 12 C -0.060 4.060 13 C 0.007 3.993 14 C -0.160 4.160 15 C 0.076 3.924 16 H 0.054 0.946 17 N -0.365 5.365 18 C -0.342 4.342 19 H 0.089 0.911 20 C -0.265 4.265 21 N -0.618 5.618 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.225 1.225 25 H -0.227 1.227 26 C -0.127 4.127 27 C -0.195 4.195 28 C -0.193 4.193 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.206 0.794 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.141 21.633 8.780 25.454 hybrid contribution -0.249 -1.895 -0.662 2.023 sum 9.892 19.738 8.118 23.523 Atomic orbital electron populations 1.20422 0.83758 1.04881 1.04659 1.22488 0.98174 0.87279 0.95633 1.77279 0.84685 1.21015 1.27096 1.49026 1.07947 1.02269 1.55806 1.22519 0.82490 0.94651 1.06132 1.17744 0.82951 0.82687 1.02705 1.91665 1.49571 1.71763 1.93800 1.19599 0.91445 0.94893 1.25999 1.17393 0.76539 0.84639 0.83244 1.90770 1.53155 1.68848 1.32258 1.47949 1.65681 1.12630 1.06601 1.21876 1.02353 0.97643 0.84152 1.21346 0.96567 0.78617 1.02760 1.22045 0.97614 0.94493 1.01885 1.20337 0.91825 0.91671 0.88611 0.94624 1.42553 1.46036 1.39228 1.08724 1.19477 1.11838 1.07755 0.95091 0.91066 1.25284 1.02911 1.02175 0.96144 1.69779 1.46981 1.44135 1.00931 0.85341 0.79243 0.79630 0.77274 1.19552 1.22536 1.22679 1.21637 0.97450 0.96175 0.97459 1.21828 0.99830 1.01283 0.96602 1.21747 0.99961 0.95961 1.01608 0.88931 0.87828 0.90309 0.87842 0.86606 0.87507 0.90932 0.90931 0.90238 0.90136 0.91785 0.91261 0.91859 0.79365 0.94435 0.92882 0.93171 0.92111 0.92564 0.93030 0.93105 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.28 71.24 0.73 -0.60 16 2 C 0.13 2.88 7.26 43.55 0.32 3.20 16 3 N -0.28 -5.79 12.49 -46.64 -0.58 -6.37 16 4 N -0.37 -6.63 3.98 -368.87 -1.47 -8.10 16 5 C 0.08 0.62 11.43 127.77 1.46 2.08 16 6 C 0.29 6.53 8.37 84.36 0.71 7.24 16 7 F -0.09 -2.01 17.31 44.97 0.78 -1.23 16 8 C -0.30 -7.85 4.13 -20.09 -0.08 -7.93 16 9 C 0.60 18.70 7.22 86.59 0.62 19.32 16 10 O -0.57 -22.34 16.69 -4.13 -0.07 -22.40 16 11 N -0.60 -17.40 2.87 -850.97 -2.45 -19.84 16 12 C 0.08 1.84 10.26 127.77 1.31 3.16 16 13 C 0.13 4.40 5.29 86.38 0.46 4.85 16 14 C -0.12 -4.11 4.86 30.59 0.15 -3.96 16 15 C 0.18 7.18 2.02 44.99 0.09 7.28 16 16 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 17 N -0.73 -34.21 4.45 -322.93 -1.44 -35.65 16 18 C -0.21 -11.02 7.57 84.03 0.64 -10.38 16 19 H 0.07 3.71 7.39 -2.91 -0.02 3.69 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 21 N -0.97 -56.91 13.06 21.65 0.28 -56.63 16 22 Si 0.95 45.74 29.55 68.60 2.03 47.77 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 C -0.11 -3.76 2.69 -10.79 -0.03 -3.78 16 27 C -0.14 -4.02 8.85 71.98 0.64 -3.39 16 28 C -0.14 -5.05 8.26 71.98 0.59 -4.45 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.46 6.62 -2.39 -0.02 1.45 16 37 H 0.08 1.80 8.07 -2.39 -0.02 1.78 16 38 H 0.08 2.96 7.68 -2.39 -0.02 2.94 16 39 H 0.06 2.40 7.42 -2.39 -0.02 2.38 16 40 H 0.07 2.32 6.17 -2.39 -0.01 2.30 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.37 18.85 7.80 -92.71 -0.72 18.13 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 1.58 6.32 -2.39 -0.02 1.56 16 48 H 0.05 2.28 6.01 -2.39 -0.01 2.26 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.38 411.30 5.37 -64.00 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.22 Total: 29.42 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 8.07 Total: 9.03 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.65 Total: -126.59 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.38 5.37 -64.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675139625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.759 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds