Wall clock time and date at job start Sat Apr 11 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30377 * 125.96578 * 2 1 4 4 N 1.39928 * 109.01926 * 180.28375 * 3 2 1 5 5 C 1.46493 * 125.74127 * 179.73094 * 4 3 2 6 6 C 1.34414 * 108.51222 * 359.71007 * 4 3 2 7 7 F 1.35096 * 126.34331 * 179.97438 * 6 4 3 8 8 C 1.38502 * 107.31464 * 359.97438 * 6 4 3 9 9 C 1.47172 * 126.46039 * 180.02562 * 8 6 4 10 10 O 1.21633 * 119.99745 * 90.02551 * 9 8 6 11 11 N 1.34773 * 120.00039 * 270.02740 * 9 8 6 12 12 C 1.46504 * 119.99812 * 359.97438 * 11 9 8 13 13 C 1.46496 * 120.00027 * 179.97438 * 11 9 8 14 14 C 1.53004 * 109.47288 * 269.99939 * 13 11 9 15 15 C 1.52995 * 109.47243 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47294 * 54.99887 * 15 14 13 17 17 N 1.46505 * 109.47024 * 294.99928 * 15 14 13 18 18 C 1.36931 * 119.99788 * 155.00126 * 17 15 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 15 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.53006 * 109.47104 * 175.00526 * 15 14 13 27 27 C 1.52995 * 109.47104 * 179.97438 * 26 15 14 28 28 C 1.53012 * 109.46635 * 299.99583 * 26 15 14 29 29 H 1.09002 * 109.47080 * 270.19555 * 1 2 3 30 30 H 1.09002 * 109.47517 * 30.19321 * 1 2 3 31 31 H 1.09003 * 109.47171 * 150.19458 * 1 2 3 32 32 H 1.09001 * 109.47326 * 269.97262 * 5 4 3 33 33 H 1.09000 * 109.47723 * 29.97469 * 5 4 3 34 34 H 1.08996 * 109.47073 * 149.97761 * 5 4 3 35 35 H 1.08998 * 109.46925 * 269.99633 * 12 11 9 36 36 H 1.08999 * 109.47306 * 30.00002 * 12 11 9 37 37 H 1.09004 * 109.46959 * 150.00291 * 12 11 9 38 38 H 1.09002 * 109.46967 * 150.00199 * 13 11 9 39 39 H 1.09002 * 109.47323 * 29.99814 * 13 11 9 40 40 H 1.09003 * 109.47011 * 59.99676 * 14 13 11 41 41 H 1.09002 * 109.46836 * 300.00173 * 14 13 11 42 42 H 0.97000 * 119.99792 * 334.99921 * 17 15 14 43 43 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 44 44 H 1.08994 * 109.47567 * 59.99528 * 26 15 14 45 45 H 1.09002 * 109.47452 * 59.99616 * 27 26 15 46 46 H 1.09001 * 109.46956 * 179.97438 * 27 26 15 47 47 H 1.08998 * 109.47373 * 299.99661 * 27 26 15 48 48 H 1.08995 * 109.46796 * 60.00032 * 28 26 15 49 49 H 1.08999 * 109.46647 * 180.02562 * 28 26 15 50 50 H 1.08994 * 109.47099 * 300.00232 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6112 0.6474 -0.0066 5 6 4.7763 1.5354 -0.0142 6 6 3.6479 -0.6963 -0.0042 7 9 4.7575 -1.4668 -0.0092 8 6 2.3374 -1.1445 0.0045 9 6 1.8930 -2.5474 0.0104 10 8 1.7149 -3.1245 1.0662 11 7 1.6832 -3.1928 -1.1541 12 6 1.8972 -2.4974 -2.4257 13 6 1.2413 -4.5895 -1.1482 14 6 2.4628 -5.5109 -1.1527 15 6 2.0012 -6.9696 -1.1472 16 1 1.3252 -7.1400 -1.9851 17 7 1.3040 -7.2565 0.1089 18 6 0.3810 -8.2664 0.1644 19 1 0.1673 -8.8518 -0.7177 20 6 -0.2754 -8.5419 1.3561 21 7 -1.1587 -9.5162 1.4109 22 14 0.0947 -7.5300 2.8820 23 1 -0.8211 -6.3623 2.9358 24 1 -0.1010 -8.3687 4.0917 25 1 1.5007 -7.0544 2.8316 26 6 3.2168 -7.8896 -1.2773 27 6 2.7554 -9.3483 -1.2712 28 6 3.9450 -7.5900 -2.5893 29 1 -0.3633 0.0035 1.0277 30 1 -0.3634 0.8882 -0.5168 31 1 -0.3634 -0.8917 -0.5108 32 1 5.0600 1.7536 -1.0438 33 1 4.5285 2.4645 0.4991 34 1 5.6073 1.0487 0.4962 35 1 0.9704 -2.0151 -2.7364 36 1 2.6750 -1.7441 -2.3015 37 1 2.2051 -3.2160 -3.1854 38 1 0.6369 -4.7830 -2.0344 39 1 0.6468 -4.7788 -0.2544 40 1 3.0672 -5.3173 -0.2666 41 1 3.0573 -5.3216 -2.0465 42 1 1.4963 -6.7310 0.9013 43 1 -1.6177 -9.7086 2.2435 44 1 3.8929 -7.7193 -0.4395 45 1 2.0791 -9.5191 -2.1089 46 1 3.6214 -10.0037 -1.3644 47 1 2.2369 -9.5615 -0.3365 48 1 4.2737 -6.5508 -2.5932 49 1 4.8107 -8.2457 -2.6822 50 1 3.2690 -7.7604 -3.4271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675139626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:58 Heat of formation + Delta-G solvation = 11.703069 kcal Electronic energy + Delta-G solvation = -31066.745081 eV Core-core repulsion = 26853.122751 eV Total energy + Delta-G solvation = -4213.622329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -49.59235 -41.70693 -39.46227 -37.40686 -35.41876 -34.52638 -32.97669 -31.74150 -30.72765 -30.12335 -29.57078 -27.01760 -26.71873 -26.18202 -25.16911 -23.01695 -22.11257 -21.22737 -20.79185 -19.47962 -19.27386 -17.95226 -17.41595 -17.25089 -16.78311 -16.37065 -16.03597 -15.09712 -15.03686 -15.00818 -14.48543 -13.94218 -13.91544 -13.83968 -13.79243 -13.65295 -13.29102 -13.25701 -13.00139 -12.80508 -12.71122 -12.53001 -12.44345 -12.29924 -12.17608 -11.78825 -11.58484 -11.32404 -11.19249 -10.91706 -10.72717 -10.48336 -10.33666 -10.10626 -10.00220 -9.93120 -9.73683 -9.67696 -9.33219 -8.97799 -8.79608 -8.51629 -7.12974 -5.66683 -3.00196 1.04543 1.57168 1.96869 2.53951 3.12632 3.51219 3.52731 3.58219 3.63123 3.98267 4.41594 4.59684 4.65649 4.72556 4.74956 4.88292 4.94010 5.03039 5.22901 5.26804 5.34673 5.39450 5.45093 5.49211 5.53697 5.56521 5.59341 5.68929 5.79171 5.86234 5.97617 6.03047 6.09274 6.22538 6.30505 6.33703 6.38010 6.43350 6.57861 6.61736 6.72546 6.78810 6.87241 7.03339 7.14957 7.42028 7.44166 8.10996 8.23927 8.52682 9.32785 10.06251 10.26722 11.51297 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003367 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.616326 B = 8315.051233 C = 9411.053541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.133 3.867 3 N -0.272 5.272 4 N -0.376 5.376 5 C 0.093 3.907 6 C 0.289 3.711 7 F -0.088 7.088 8 C -0.279 4.279 9 C 0.591 3.409 10 O -0.516 6.516 11 N -0.606 5.606 12 C 0.084 3.916 13 C 0.118 3.882 14 C -0.141 4.141 15 C 0.191 3.809 16 H 0.055 0.945 17 N -0.747 5.747 18 C -0.234 4.234 19 H 0.093 0.907 20 C 0.005 3.995 21 N -0.936 5.936 22 Si 0.878 3.122 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.276 1.276 26 C -0.111 4.111 27 C -0.140 4.140 28 C -0.145 4.145 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.363 0.637 43 H 0.258 0.742 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.088 0.912 48 H 0.048 0.952 49 H 0.043 0.957 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.327 23.121 -9.858 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.095 5.095 4 N -0.161 5.161 5 C -0.047 4.047 6 C 0.142 3.858 7 F -0.067 7.067 8 C -0.295 4.295 9 C 0.376 3.624 10 O -0.390 6.390 11 N -0.339 5.339 12 C -0.059 4.059 13 C -0.004 4.004 14 C -0.180 4.180 15 C 0.081 3.919 16 H 0.073 0.927 17 N -0.390 5.390 18 C -0.364 4.364 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.584 5.584 22 Si 0.709 3.291 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.202 1.202 26 C -0.133 4.133 27 C -0.197 4.197 28 C -0.203 4.203 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.197 0.803 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.268 23.936 -9.343 28.057 hybrid contribution 0.896 -0.287 1.126 1.467 sum 12.164 23.649 -8.218 27.835 Atomic orbital electron populations 1.20341 0.85077 1.04068 1.04282 1.22209 0.97239 0.87933 0.95970 1.77310 0.84085 1.21115 1.26943 1.48660 1.07301 1.02549 1.57591 1.22059 0.83680 0.94696 1.04285 1.17772 0.83385 0.81819 1.02827 1.91671 1.49646 1.71556 1.93800 1.19748 0.90320 0.95870 1.23580 1.17100 0.77600 0.83860 0.83884 1.90874 1.50106 1.67391 1.30663 1.47907 1.67168 1.13336 1.05524 1.21691 1.01130 0.97438 0.85649 1.21640 0.97002 0.77322 1.04415 1.22283 0.97704 0.96207 1.01824 1.20166 0.91880 0.89668 0.90210 0.92685 1.42889 1.47807 1.40610 1.07666 1.19047 1.12236 1.07737 0.97355 0.88967 1.24619 0.98858 0.98252 0.97322 1.69699 1.30039 1.32263 1.26420 0.86642 0.78424 0.79931 0.84141 1.21026 1.22134 1.20184 1.21752 0.98036 0.97483 0.96017 1.21831 0.99352 0.94367 1.04140 1.21917 0.99703 1.00295 0.98378 0.89316 0.89869 0.89769 0.89798 0.88134 0.89042 0.92515 0.92083 0.90750 0.90332 0.88546 0.92017 0.91713 0.80337 0.93245 0.92443 0.93893 0.95309 0.89324 0.93322 0.93811 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.28 36.00 0.37 -0.35 16 2 C 0.13 1.55 7.26 -82.01 -0.60 0.95 16 3 N -0.27 -3.06 12.49 33.91 0.42 -2.64 16 4 N -0.38 -3.76 3.98 -67.95 -0.27 -4.03 16 5 C 0.09 0.48 11.43 59.84 0.68 1.16 16 6 C 0.29 3.46 8.37 -16.32 -0.14 3.33 16 7 F -0.09 -1.05 17.31 2.25 0.04 -1.01 16 8 C -0.28 -3.73 4.13 -104.97 -0.43 -4.16 16 9 C 0.59 9.46 7.22 -12.63 -0.09 9.36 16 10 O -0.52 -10.70 16.69 5.25 0.09 -10.61 16 11 N -0.61 -8.31 2.87 -182.94 -0.53 -8.83 16 12 C 0.08 0.80 10.26 59.85 0.61 1.42 16 13 C 0.12 1.84 5.29 -4.04 -0.02 1.82 16 14 C -0.14 -2.26 4.86 -26.73 -0.13 -2.39 16 15 C 0.19 3.58 2.02 -67.93 -0.14 3.44 16 16 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 17 N -0.75 -17.51 4.26 -53.42 -0.23 -17.73 16 18 C -0.23 -6.40 8.05 -15.06 -0.12 -6.52 16 19 H 0.09 2.68 7.62 -52.49 -0.40 2.28 16 20 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 21 N -0.94 -29.47 13.97 55.49 0.78 -28.69 16 22 Si 0.88 23.35 27.74 -169.99 -4.72 18.63 16 23 H -0.28 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.28 -7.17 6.51 56.52 0.37 -6.81 16 26 C -0.11 -1.96 2.69 -90.61 -0.24 -2.20 16 27 C -0.14 -2.68 8.26 37.16 0.31 -2.37 16 28 C -0.15 -2.03 8.85 37.16 0.33 -1.70 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.56 6.62 -51.93 -0.34 0.21 16 37 H 0.07 0.60 8.07 -51.93 -0.42 0.19 16 38 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 39 H 0.10 1.88 7.03 -51.93 -0.37 1.51 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.88 6.17 -51.93 -0.32 0.55 16 42 H 0.36 8.93 5.66 -40.82 -0.23 8.70 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.09 2.04 6.01 -51.93 -0.31 1.73 16 48 H 0.05 0.62 6.32 -51.93 -0.33 0.29 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -35.21 408.18 -6.18 -41.39 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.22 Total: 5.53 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 0.30 Total: 1.84 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.17 Total: -61.93 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.72 Total: 18.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.21 -6.18 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675139626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.096 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds