Wall clock time and date at job start Sat Apr 11 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.99816 * 2 1 4 4 C 1.54327 * 109.88277 * 238.89801 * 2 1 3 5 5 C 1.55154 * 102.94290 * 218.39145 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46900 * 111.00320 * 153.61398 * 5 4 2 8 8 C 1.46904 * 110.99917 * 158.17965 * 7 5 4 9 9 C 1.52995 * 109.46963 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47044 * 294.99896 * 9 8 7 11 11 C 1.53000 * 109.47139 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47523 * 59.99782 * 11 10 9 13 13 C 1.52999 * 109.47091 * 300.00247 * 12 11 10 14 14 C 1.52997 * 109.47305 * 174.99869 * 9 8 7 15 15 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 16 16 N 1.47029 * 109.88243 * 121.09352 * 2 1 3 17 17 C 1.34773 * 125.64745 * 298.31299 * 16 2 1 18 18 O 1.21289 * 120.00133 * 0.02562 * 17 16 2 19 19 C 1.50701 * 120.00085 * 179.97438 * 17 16 2 20 20 S 1.81006 * 109.47199 * 179.97438 * 19 17 16 21 21 C 1.76195 * 99.99818 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00468 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99749 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99960 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99717 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47271 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46764 * 120.00301 * 25 23 21 28 28 H 1.48498 * 109.47011 * 240.00007 * 25 23 21 29 29 H 1.09008 * 109.47549 * 181.10192 * 1 2 3 30 30 H 1.09001 * 109.47247 * 301.09809 * 1 2 3 31 31 H 1.09005 * 109.47241 * 61.09724 * 1 2 3 32 32 H 1.09004 * 110.71649 * 100.02728 * 4 2 1 33 33 H 1.08997 * 110.87056 * 336.82650 * 4 2 1 34 34 H 1.00899 * 111.00265 * 282.13684 * 7 5 4 35 35 H 1.09002 * 109.46904 * 299.99983 * 8 7 5 36 36 H 1.08997 * 109.46968 * 59.99918 * 8 7 5 37 37 H 1.08994 * 109.47523 * 55.00004 * 9 8 7 38 38 H 1.09001 * 109.47163 * 299.99976 * 10 9 8 39 39 H 1.08995 * 109.47286 * 60.00572 * 10 9 8 40 40 H 1.09008 * 109.47093 * 300.00048 * 11 10 9 41 41 H 1.09004 * 109.47239 * 180.02562 * 11 10 9 42 42 H 1.08993 * 109.47533 * 180.02562 * 12 11 10 43 43 H 1.09001 * 109.47008 * 60.00209 * 12 11 10 44 44 H 1.09001 * 109.47163 * 299.99866 * 13 12 11 45 45 H 1.09005 * 109.47023 * 179.97438 * 13 12 11 46 46 H 1.08996 * 109.47154 * 300.00102 * 14 9 8 47 47 H 1.09001 * 109.47008 * 59.99959 * 14 9 8 48 48 H 1.08995 * 110.36257 * 81.82999 * 15 5 4 49 49 H 1.08997 * 110.36405 * 204.14718 * 15 5 4 50 50 H 1.08997 * 109.47078 * 299.99511 * 19 17 16 51 51 H 1.08999 * 109.46736 * 60.00000 * 19 17 16 52 52 H 0.97003 * 119.99966 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2427 5 6 3.2875 -1.5144 -0.6922 6 1 4.1653 -0.8690 -0.6603 7 7 3.5543 -2.7226 -1.4841 8 6 4.9491 -3.1566 -1.3285 9 6 5.1883 -4.4141 -2.1665 10 6 4.3428 -5.5634 -1.6143 11 6 4.5825 -6.8212 -2.4519 12 6 6.0631 -7.2014 -2.3890 13 6 6.9087 -6.0520 -2.9412 14 6 6.6689 -4.7946 -2.1041 15 6 2.8144 -1.8794 0.7370 16 7 2.0300 -0.7141 1.1840 17 6 1.8086 -0.3611 2.4657 18 8 1.1453 0.6225 2.7180 19 6 2.3843 -1.1892 3.5855 20 16 1.9154 -0.4628 5.1757 21 6 2.6975 -1.5980 6.2731 22 1 3.2568 -2.4331 5.8777 23 6 2.5957 -1.4185 7.6457 24 7 1.9145 -0.4005 8.1275 25 14 3.4243 -2.6224 8.8091 26 1 4.1215 -3.6712 8.0221 27 1 4.4104 -1.8983 9.6508 28 1 2.4003 -3.2544 9.6791 29 1 -0.3634 -1.0275 0.0198 30 1 -0.3634 0.5308 0.8800 31 1 -0.3634 0.4967 -0.8997 32 1 2.3529 -0.0461 -2.0201 33 1 1.3064 -1.4460 -1.6209 34 1 2.9154 -3.4640 -1.2390 35 1 5.6162 -2.3633 -1.6658 36 1 5.1465 -3.3758 -0.2792 37 1 4.9064 -4.2202 -3.2014 38 1 4.6247 -5.7574 -0.5794 39 1 3.2880 -5.2925 -1.6589 40 1 4.3008 -6.6275 -3.4870 41 1 3.9797 -7.6399 -2.0588 42 1 6.2339 -8.0971 -2.9861 43 1 6.3448 -7.3951 -1.3540 44 1 6.6270 -5.8584 -3.9762 45 1 7.9636 -6.3228 -2.8960 46 1 7.2713 -3.9758 -2.4975 47 1 6.9509 -4.9885 -1.0692 48 1 2.1885 -2.7715 0.7130 49 1 3.6715 -2.0339 1.3924 50 1 1.9968 -2.2059 3.5218 51 1 3.4709 -1.2084 3.5015 52 1 1.8431 -0.2752 9.0867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676710816.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:35 Heat of formation + Delta-G solvation = -84.607706 kcal Electronic energy + Delta-G solvation = -27558.605606 eV Core-core repulsion = 23874.727353 eV Total energy + Delta-G solvation = -3683.878253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.32879 -39.81952 -38.76028 -36.10286 -34.62037 -33.38454 -32.62461 -31.59171 -30.34344 -29.65629 -27.70098 -26.81312 -25.69730 -23.63974 -23.11582 -21.95586 -21.75172 -20.55016 -20.35791 -19.52224 -18.25214 -17.47607 -16.91807 -16.85219 -16.39310 -16.29601 -15.90109 -15.71113 -15.17516 -15.04893 -14.91068 -14.61432 -14.54485 -14.35139 -14.20038 -13.96069 -13.82253 -13.54834 -13.28006 -13.18478 -13.03085 -12.99414 -12.93621 -12.89461 -12.59828 -12.38098 -12.31470 -11.96661 -11.90345 -11.79707 -11.74004 -11.69269 -11.28010 -11.18846 -10.93751 -10.86310 -10.82015 -10.32385 -9.77744 -9.38473 -8.71758 -8.37871 -6.16845 1.20493 1.39308 1.42075 1.53411 1.54562 2.02735 2.23880 2.96265 3.01702 3.24950 3.53013 3.57275 3.83343 3.87802 3.90322 3.92752 4.00043 4.11914 4.18538 4.25673 4.29361 4.36157 4.41453 4.43944 4.48917 4.56152 4.62129 4.64038 4.69681 4.70408 4.73457 4.78714 4.86998 4.92131 4.99165 5.04338 5.10721 5.16048 5.21475 5.29037 5.30551 5.35399 5.36682 5.38204 5.44176 5.47584 5.51393 5.65592 6.03245 6.16553 6.35120 6.43391 7.03140 7.10092 8.71732 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.002628 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.336270 B =10653.619579 C =13208.291186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.065 0.935 4 C -0.099 4.099 5 C 0.088 3.912 6 H 0.095 0.905 7 N -0.667 5.667 8 C 0.061 3.939 9 C -0.077 4.077 10 C -0.117 4.117 11 C -0.118 4.118 12 C -0.122 4.122 13 C -0.117 4.117 14 C -0.114 4.114 15 C 0.067 3.933 16 N -0.610 5.610 17 C 0.546 3.454 18 O -0.560 6.560 19 C -0.120 4.120 20 S -0.148 6.148 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.257 1.257 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.348 0.652 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.102 0.898 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.397 -12.586 -27.941 31.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.083 0.917 4 C -0.137 4.137 5 C -0.024 4.024 6 H 0.113 0.887 7 N -0.298 5.298 8 C -0.068 4.068 9 C -0.095 4.095 10 C -0.155 4.155 11 C -0.155 4.155 12 C -0.159 4.159 13 C -0.155 4.155 14 C -0.152 4.152 15 C -0.057 4.057 16 N -0.345 5.345 17 C 0.334 3.666 18 O -0.438 6.438 19 C -0.271 4.271 20 S 0.079 5.921 21 C -0.693 4.693 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.822 3.178 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.473 -10.688 -27.961 30.853 hybrid contribution 0.903 -1.733 1.936 2.750 sum 8.376 -12.420 -26.026 30.029 Atomic orbital electron populations 1.22079 0.94817 1.02206 1.02386 1.21801 0.94847 0.96473 0.84469 0.91667 1.22657 0.97017 0.99333 0.94695 1.22676 0.98558 0.93218 0.87952 0.88695 1.60614 1.05125 1.07246 1.56799 1.22097 0.89376 0.97368 0.97986 1.21084 0.95193 0.93180 1.00077 1.21615 0.99848 0.94925 0.99089 1.21504 0.96294 0.97361 1.00382 1.21552 0.95231 0.98155 1.00984 1.21500 0.99697 0.94775 0.99509 1.21535 0.95593 0.97873 1.00225 1.23342 0.95387 0.88622 0.98394 1.48430 1.52901 1.29220 1.03955 1.19735 0.79670 0.84414 0.82812 1.90678 1.40806 1.28810 1.83538 1.23303 1.04373 1.02735 0.96677 1.85573 1.70982 1.39890 0.95615 1.23195 1.38419 1.14039 0.93671 0.90108 1.26148 0.95725 0.97979 0.99294 1.70187 1.40118 1.30207 1.14181 0.84890 0.77922 0.77668 0.77365 1.18053 1.19802 1.19797 0.92243 0.94838 0.89164 0.87988 0.88834 0.83114 0.90739 0.95321 0.90435 0.92836 0.91481 0.91757 0.92113 0.91785 0.92641 0.91765 0.91842 0.91591 0.92572 0.90266 0.90740 0.88045 0.88013 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.10 71.98 0.65 -3.10 16 2 C 0.13 2.94 3.46 45.34 0.16 3.10 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.10 -1.43 6.17 31.78 0.20 -1.24 16 5 C 0.09 1.29 3.34 46.31 0.15 1.45 16 6 H 0.09 1.46 7.87 -2.39 -0.02 1.44 16 7 N -0.67 -7.98 6.39 -484.40 -3.10 -11.08 16 8 C 0.06 0.72 5.03 86.30 0.43 1.15 16 9 C -0.08 -0.82 2.40 -10.80 -0.03 -0.84 16 10 C -0.12 -1.28 4.98 30.59 0.15 -1.12 16 11 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 12 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 13 C -0.12 -1.17 5.92 30.58 0.18 -0.99 16 14 C -0.11 -1.21 5.20 30.58 0.16 -1.06 16 15 C 0.07 1.34 6.30 86.86 0.55 1.89 16 16 N -0.61 -17.31 3.06 -788.06 -2.41 -19.72 16 17 C 0.55 21.68 7.66 87.66 0.67 22.35 16 18 O -0.56 -27.19 14.91 -3.06 -0.05 -27.23 16 19 C -0.12 -5.03 5.16 71.24 0.37 -4.66 16 20 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 21 C -0.55 -31.59 9.50 67.96 0.65 -30.95 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.77 5.49 84.86 0.47 1.23 16 24 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 25 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 26 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.03 1.07 6.91 -2.39 -0.02 1.05 16 31 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.20 7.86 -2.39 -0.02 1.18 16 34 H 0.35 3.83 6.50 -89.69 -0.58 3.25 16 35 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 36 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.68 6.68 -2.39 -0.02 0.67 16 40 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 43 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.08 1.42 7.77 -2.39 -0.02 1.40 16 49 H 0.07 1.53 7.47 -2.39 -0.02 1.51 16 50 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 51 H 0.10 3.93 7.84 -2.40 -0.02 3.91 16 52 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.45 413.97 1.01 -73.44 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.29 Total: 19.32 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 5.12 Total: -14.93 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -5.22 Total: -86.89 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -74.45 1.01 -73.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676710816.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.170 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds