Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99726 * 2 1 4 4 N 1.46900 * 109.46911 * 125.00278 * 3 2 1 5 5 C 1.46899 * 110.99714 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47044 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47310 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47018 * 175.06964 * 7 6 5 9 9 H 1.09007 * 109.58539 * 59.76527 * 8 7 6 10 10 C 1.53198 * 109.58971 * 299.47929 * 8 7 6 11 11 H 1.09003 * 109.49385 * 65.62744 * 10 8 7 12 12 C 1.52991 * 109.49402 * 305.52936 * 10 8 7 13 13 C 1.53073 * 109.29135 * 185.72003 * 10 8 7 14 14 C 1.53035 * 109.66269 * 61.15465 * 13 10 8 15 15 C 1.53194 * 109.31396 * 298.69771 * 14 13 10 16 16 N 1.46926 * 108.77617 * 54.62950 * 15 14 13 17 17 C 1.34776 * 120.63173 * 126.36737 * 16 15 14 18 18 O 1.21277 * 120.00385 * 185.45194 * 17 16 15 19 19 C 1.50706 * 119.99845 * 5.45869 * 17 16 15 20 20 S 1.80994 * 109.47044 * 179.97438 * 19 17 16 21 21 C 1.76207 * 99.99767 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00055 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99760 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00148 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47013 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46976 * 120.00268 * 25 23 21 28 28 H 1.48501 * 109.47413 * 240.00679 * 25 23 21 29 29 H 1.08004 * 119.99896 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00423 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99858 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47015 * 244.99992 * 3 2 1 33 33 H 1.09003 * 109.47265 * 5.00016 * 3 2 1 34 34 H 1.00899 * 110.99615 * 303.95536 * 4 3 2 35 35 H 1.08995 * 109.47046 * 299.99690 * 5 4 3 36 36 H 1.09004 * 109.47096 * 59.99999 * 5 4 3 37 37 H 1.09008 * 109.46870 * 299.99933 * 6 5 4 38 38 H 1.09001 * 109.47407 * 59.99308 * 6 5 4 39 39 H 1.09000 * 109.47170 * 295.07223 * 7 6 5 40 40 H 1.08996 * 109.46863 * 55.07316 * 7 6 5 41 41 H 1.08997 * 109.47678 * 60.00020 * 12 10 8 42 42 H 1.09006 * 109.46710 * 179.97438 * 12 10 8 43 43 H 1.08998 * 109.47711 * 299.99625 * 12 10 8 44 44 H 1.09001 * 109.34897 * 301.12816 * 13 10 8 45 45 H 1.09000 * 109.44687 * 181.24741 * 13 10 8 46 46 H 1.08996 * 109.49961 * 178.74315 * 14 13 10 47 47 H 1.09005 * 109.49728 * 58.64576 * 14 13 10 48 48 H 1.09006 * 109.58326 * 294.84702 * 15 14 13 49 49 H 1.08998 * 109.70740 * 174.48615 * 15 14 13 50 50 H 1.08996 * 109.47005 * 299.99614 * 19 17 16 51 51 H 1.09002 * 109.47077 * 59.99378 * 19 17 16 52 52 H 0.96998 * 119.99736 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.7504 2.5922 1.1662 6 6 4.7096 2.5827 2.3582 7 6 5.4945 3.8956 2.3917 8 6 6.3632 3.9384 3.6504 9 1 7.0569 3.0976 3.6445 10 6 5.4709 3.8594 4.8932 11 1 4.9804 2.8866 4.9275 12 6 4.4136 4.9635 4.8336 13 6 6.3307 4.0460 6.1458 14 6 6.9969 5.4234 6.1125 15 6 7.9067 5.5166 4.8836 16 7 7.1175 5.1988 3.6857 17 6 7.0855 6.0477 2.6393 18 8 6.3541 5.8230 1.6983 19 6 7.9588 7.2759 2.6385 20 16 7.6913 8.2053 1.1086 21 6 8.8027 9.5478 1.3679 22 1 9.3873 9.5975 2.2745 23 6 8.9267 10.5416 0.4068 24 7 8.2138 10.4814 -0.6981 25 14 10.1043 11.9653 0.6820 26 1 10.7820 11.8007 1.9932 27 1 11.1203 11.9837 -0.4009 28 1 9.3474 13.2428 0.6725 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 2.6213 1.4026 -0.9314 33 1 1.3585 2.1317 0.0896 34 1 2.5107 1.1786 2.0055 35 1 4.3199 2.6982 0.2430 36 1 3.0574 3.4279 1.2637 37 1 4.1404 2.4765 3.2818 38 1 5.4025 1.7470 2.2604 39 1 6.1305 3.9613 1.5089 40 1 4.7989 4.7346 2.4016 41 1 3.8033 4.8345 3.9398 42 1 3.7786 4.9065 5.7179 43 1 4.9049 5.9359 4.8008 44 1 7.0979 3.2723 6.1759 45 1 5.7018 3.9681 7.0326 46 1 7.5906 5.5623 7.0160 47 1 6.2308 6.1968 6.0575 48 1 8.7262 4.8043 4.9807 49 1 8.3083 6.5264 4.7992 50 1 7.7053 7.9025 3.4936 51 1 9.0052 6.9778 2.7040 52 1 8.3008 11.1757 -1.3698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691390676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = -36.413730 kcal Electronic energy + Delta-G solvation = -27936.964364 eV Core-core repulsion = 24255.175959 eV Total energy + Delta-G solvation = -3681.788405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77007 -38.78663 -38.09387 -35.90456 -34.60647 -34.48240 -33.62249 -31.22131 -30.90151 -28.16573 -27.62696 -27.21489 -25.57151 -24.64543 -23.17083 -21.96966 -21.35606 -20.59667 -19.86677 -19.11421 -17.75933 -17.46373 -16.92277 -16.87067 -16.83022 -16.39909 -15.91224 -15.71513 -15.46595 -15.35941 -14.90904 -14.87839 -14.56368 -14.47673 -14.16301 -14.12557 -13.79564 -13.53844 -13.28158 -13.14299 -13.05153 -12.93617 -12.78381 -12.66322 -12.57374 -12.48261 -12.21748 -11.93066 -11.86885 -11.71901 -11.69307 -11.53127 -11.27041 -11.16987 -11.10371 -10.38135 -10.25827 -9.99338 -9.48630 -9.44313 -8.66717 -8.36110 -6.13466 1.26054 1.32084 1.39585 1.45627 1.56638 1.65876 2.14659 2.26802 2.97908 3.18884 3.29159 3.62084 3.81671 3.88853 3.97009 3.98540 4.10161 4.11067 4.16885 4.24782 4.25858 4.28111 4.44013 4.46135 4.53208 4.55939 4.59760 4.63442 4.67092 4.72175 4.81026 4.87498 4.89180 4.97671 5.01118 5.02485 5.07584 5.13668 5.23797 5.28586 5.31365 5.40371 5.45054 5.52865 5.56949 5.68980 5.74183 5.85172 5.99617 6.18489 6.41028 6.45208 7.05275 7.26854 8.73250 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.002613 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.098836 B =10714.098794 C =12949.114004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 C 0.080 3.920 4 N -0.686 5.686 5 C 0.065 3.935 6 C -0.109 4.109 7 C -0.099 4.099 8 C 0.152 3.848 9 H 0.082 0.918 10 C -0.097 4.097 11 H 0.101 0.899 12 C -0.144 4.144 13 C -0.110 4.110 14 C -0.134 4.134 15 C 0.098 3.902 16 N -0.602 5.602 17 C 0.531 3.469 18 O -0.546 6.546 19 C -0.126 4.126 20 S -0.148 6.148 21 C -0.545 4.545 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.347 0.653 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -19.920 15.588 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.177 4.177 3 C -0.049 4.049 4 N -0.317 5.317 5 C -0.064 4.064 6 C -0.147 4.147 7 C -0.137 4.137 8 C 0.050 3.950 9 H 0.100 0.900 10 C -0.116 4.116 11 H 0.119 0.881 12 C -0.201 4.201 13 C -0.147 4.147 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.336 5.336 17 C 0.318 3.682 18 O -0.424 6.424 19 C -0.277 4.277 20 S 0.080 5.920 21 C -0.693 4.693 22 H 0.098 0.902 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.166 0.834 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.115 0.885 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.118 0.882 51 H 0.118 0.882 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.763 -20.521 13.721 26.195 hybrid contribution 0.737 2.156 0.718 2.389 sum -8.025 -18.365 14.438 24.701 Atomic orbital electron populations 1.24072 0.95665 1.02758 0.99565 1.22885 0.95848 0.98096 1.00839 1.21099 0.93725 0.95106 0.94948 1.60454 1.29599 1.34896 1.06730 1.21834 0.95765 0.89460 0.99390 1.21627 0.98005 0.97376 0.97683 1.21890 0.98469 0.96685 0.96675 1.21425 0.92950 0.84736 0.95904 0.89986 1.21568 0.95715 1.00231 0.94049 0.88098 1.21851 0.98487 0.98398 1.01413 1.21551 0.99235 0.96812 0.97101 1.21952 0.99282 0.98502 0.97433 1.22017 0.94174 1.02491 0.83705 1.48086 1.49072 1.20241 1.16207 1.19998 0.82153 0.83683 0.82377 1.90742 1.40683 1.74056 1.36961 1.23434 1.02785 0.98143 1.03380 1.85501 1.57839 1.26030 1.22654 1.23223 1.27822 1.09941 1.08315 0.90164 1.26126 0.98047 1.01061 0.93957 1.70189 1.40640 1.35115 1.08801 0.84918 0.77460 0.76754 0.78897 1.18035 1.19892 1.19884 0.86716 0.88577 0.86470 0.91089 0.95066 0.83418 0.92795 0.96272 0.90269 0.91014 0.93097 0.92652 0.93794 0.91401 0.94470 0.90416 0.90166 0.88511 0.92421 0.89407 0.90055 0.88232 0.88198 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 14.32 67.78 0.97 -1.42 16 2 C -0.16 -2.46 9.78 25.64 0.25 -2.21 16 3 C 0.08 1.51 6.12 85.56 0.52 2.04 16 4 N -0.69 -13.44 6.49 -517.93 -3.36 -16.80 16 5 C 0.06 1.51 5.69 86.30 0.49 2.00 16 6 C -0.11 -2.27 5.27 30.59 0.16 -2.11 16 7 C -0.10 -2.75 2.65 30.59 0.08 -2.67 16 8 C 0.15 3.45 2.71 44.98 0.12 3.57 16 9 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 10 C -0.10 -1.61 2.31 -10.71 -0.02 -1.64 16 11 H 0.10 1.33 6.66 -2.39 -0.02 1.32 16 12 C -0.14 -2.97 8.21 71.98 0.59 -2.38 16 13 C -0.11 -1.39 5.42 30.63 0.17 -1.23 16 14 C -0.13 -2.02 5.74 30.67 0.18 -1.84 16 15 C 0.10 1.93 6.33 86.36 0.55 2.47 16 16 N -0.60 -16.22 2.42 -794.99 -1.93 -18.14 16 17 C 0.53 20.00 7.63 87.66 0.67 20.67 16 18 O -0.55 -24.53 11.27 -3.02 -0.03 -24.56 16 19 C -0.13 -5.18 4.56 71.24 0.33 -4.86 16 20 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 21 C -0.55 -31.52 9.50 67.96 0.65 -30.87 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 25 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 H 0.11 1.14 8.06 -2.91 -0.02 1.11 16 30 H 0.10 1.23 7.84 -2.91 -0.02 1.21 16 31 H 0.12 1.74 8.06 -2.91 -0.02 1.71 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 0.60 7.79 -2.39 -0.02 0.58 16 34 H 0.35 5.72 8.72 -89.69 -0.78 4.94 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 1.33 6.33 -2.38 -0.02 1.32 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.81 6.45 -2.39 -0.02 1.79 16 40 H 0.05 1.85 5.22 -2.39 -0.01 1.84 16 41 H 0.04 1.03 6.34 -2.39 -0.02 1.02 16 42 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.04 0.93 5.97 -2.39 -0.01 0.92 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 1.06 6.34 -2.38 -0.02 1.05 16 48 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.08 1.71 5.96 -2.39 -0.01 1.70 16 50 H 0.10 3.78 7.47 -2.40 -0.02 3.76 16 51 H 0.10 3.80 8.12 -2.39 -0.02 3.78 16 52 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.64 409.44 2.10 -71.54 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.11 Total: 26.79 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 6.16 Total: -19.27 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -5.00 Total: -91.08 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.03 Total: -24.56 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -73.64 2.10 -71.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691390676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.130 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds