Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.49615 * 2 1 4 4 C 1.53045 * 109.49506 * 239.93872 * 2 1 3 5 5 C 1.53042 * 109.53580 * 301.38358 * 4 2 1 6 6 C 1.53194 * 109.31023 * 298.62869 * 5 4 2 7 7 N 1.46932 * 108.77331 * 54.64340 * 6 5 4 8 8 C 1.34773 * 120.63051 * 126.40846 * 7 6 5 9 9 O 1.21278 * 119.99965 * 174.43771 * 8 7 6 10 10 C 1.50706 * 120.00158 * 354.44015 * 8 7 6 11 11 S 1.81001 * 109.47045 * 179.97438 * 10 8 7 12 12 C 1.76193 * 99.99934 * 180.02562 * 11 10 8 13 13 H 1.08006 * 119.99782 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00071 * 180.02562 * 12 11 10 15 15 N 1.31629 * 120.00189 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99978 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47459 * 89.99848 * 16 14 12 18 18 H 1.48499 * 109.46901 * 209.99797 * 16 14 12 19 19 H 1.48501 * 109.47187 * 329.99590 * 16 14 12 20 20 C 1.46920 * 118.73528 * 306.38517 * 7 6 5 21 21 H 1.09003 * 109.59197 * 293.82441 * 20 7 6 22 22 C 1.53004 * 109.58586 * 173.39673 * 20 7 6 23 23 C 1.52995 * 109.47288 * 182.08935 * 22 20 7 24 24 N 1.46900 * 109.47404 * 185.08214 * 23 22 20 25 25 C 1.46897 * 111.00475 * 180.02562 * 24 23 22 26 26 C 1.52995 * 109.47297 * 179.97438 * 25 24 23 27 27 C 1.53007 * 117.49616 * 243.61918 * 26 25 24 28 28 C 1.53004 * 117.49891 * 174.99743 * 26 25 24 29 29 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46677 * 299.99188 * 1 2 3 31 31 H 1.08992 * 109.47511 * 59.99447 * 1 2 3 32 32 H 1.08998 * 109.45894 * 61.39951 * 4 2 1 33 33 H 1.08994 * 109.45971 * 181.37102 * 4 2 1 34 34 H 1.08997 * 109.49847 * 58.58733 * 5 4 2 35 35 H 1.09008 * 109.49438 * 178.68795 * 5 4 2 36 36 H 1.09001 * 109.58155 * 174.42233 * 6 5 4 37 37 H 1.08996 * 109.59016 * 294.84954 * 6 5 4 38 38 H 1.08992 * 109.46935 * 300.00311 * 10 8 7 39 39 H 1.09003 * 109.46792 * 59.99736 * 10 8 7 40 40 H 0.96999 * 120.00223 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.47180 * 302.08935 * 22 20 7 42 42 H 1.08996 * 109.46789 * 62.08711 * 22 20 7 43 43 H 1.09002 * 109.47399 * 305.07848 * 23 22 20 44 44 H 1.08999 * 109.47652 * 65.07998 * 23 22 20 45 45 H 1.00906 * 110.99309 * 303.95404 * 24 23 22 46 46 H 1.09006 * 109.46780 * 300.00008 * 25 24 23 47 47 H 1.09001 * 109.47449 * 59.99082 * 25 24 23 48 48 H 1.08996 * 115.55290 * 29.32294 * 26 25 24 49 49 H 1.09001 * 117.49756 * 0.02562 * 27 26 25 50 50 H 1.08999 * 117.49683 * 145.02396 * 27 26 25 51 51 H 1.09000 * 117.50026 * 214.97632 * 28 26 25 52 52 H 1.08998 * 117.49486 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7227 -1.2487 5 6 1.5035 -2.1556 -1.2663 6 6 2.0154 -2.9038 -0.0314 7 7 1.6529 -2.1383 1.1692 8 6 0.9767 -2.7227 2.1780 9 8 0.7713 -2.1109 3.2048 10 6 0.4757 -4.1363 2.0300 11 16 -0.3854 -4.6327 3.5428 12 6 -0.8501 -6.2750 3.1054 13 1 -0.5839 -6.6717 2.1367 14 6 -1.5584 -7.0588 4.0056 15 7 -1.8825 -6.5755 5.1863 16 14 -2.0506 -8.8002 3.5421 17 1 -0.9770 -9.7427 3.9477 18 1 -3.3130 -9.1593 4.2368 19 1 -2.2530 -8.8831 2.0733 20 6 2.0421 -0.7239 1.2493 21 1 3.1282 -0.6458 1.2974 22 6 1.4237 -0.0917 2.4979 23 6 1.7876 1.3934 2.5511 24 7 1.2979 1.9728 3.8091 25 6 1.6294 3.4013 3.8951 26 6 1.1039 3.9683 5.2154 27 6 0.0246 5.0502 5.1398 28 6 1.4517 5.4205 5.5488 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.6982 -0.1954 -2.1390 33 1 3.1305 -0.7437 -1.2358 34 1 0.4138 -2.1357 -1.2541 35 1 1.8487 -2.6624 -2.1676 36 1 1.5571 -3.8918 0.0131 37 1 3.0993 -3.0036 -0.0878 38 1 -0.2112 -4.1918 1.1856 39 1 1.3194 -4.8044 1.8567 40 1 -2.3771 -7.1234 5.8155 41 1 0.3396 -0.1990 2.4606 42 1 1.8080 -0.5920 3.3867 43 1 2.8706 1.5044 2.4974 44 1 1.3272 1.9108 1.7094 45 1 0.3050 1.8255 3.9126 46 1 2.7113 3.5265 3.8504 47 1 1.1677 3.9323 3.0626 48 1 1.0507 3.2608 6.0428 49 1 -0.3113 5.3576 4.1495 50 1 -0.7390 5.0545 5.9176 51 1 1.6269 5.6684 6.5957 52 1 2.0546 5.9720 4.8274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691717947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -27.465322 kcal Electronic energy + Delta-G solvation = -28105.236976 eV Core-core repulsion = 24423.836603 eV Total energy + Delta-G solvation = -3681.400373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76816 -38.96015 -38.64735 -36.69625 -34.70848 -34.58500 -33.62909 -30.98464 -30.11147 -27.87710 -27.59327 -26.63395 -25.19061 -23.96899 -23.22446 -22.21027 -21.40718 -21.25871 -19.84312 -19.13733 -17.89899 -17.17220 -17.07911 -16.88202 -16.78550 -16.47819 -15.89343 -15.62148 -15.42503 -15.38557 -15.10153 -14.76354 -14.52685 -14.45534 -14.24449 -14.04748 -13.62986 -13.48243 -13.37061 -13.18486 -12.95546 -12.90059 -12.70011 -12.58264 -12.40658 -12.35232 -12.19196 -12.16586 -11.83996 -11.71331 -11.64562 -11.38597 -11.24847 -11.14510 -11.14241 -10.88626 -10.24388 -10.01921 -9.48448 -9.29958 -8.65488 -8.34570 -6.12106 1.26723 1.41447 1.46228 1.56430 1.66937 2.14116 2.27949 2.84425 2.99245 3.14396 3.30039 3.65367 3.81112 3.86611 3.88891 3.95772 4.02549 4.09491 4.12198 4.21818 4.26525 4.27468 4.35795 4.44063 4.45902 4.51288 4.55579 4.61562 4.65573 4.69402 4.76431 4.77212 4.82872 4.84664 4.89402 4.99533 5.01127 5.08222 5.18371 5.23896 5.25638 5.28237 5.30922 5.35349 5.41042 5.50182 5.53449 5.84616 6.17769 6.19391 6.38394 6.42861 7.06510 7.28473 8.74547 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.002774 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.064893 B =10090.338814 C =12366.456314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.097 0.903 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.098 3.902 7 N -0.602 5.602 8 C 0.530 3.470 9 O -0.544 6.544 10 C -0.125 4.125 11 S -0.147 6.147 12 C -0.546 4.546 13 H 0.080 0.920 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.997 3.003 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.258 1.258 20 C 0.155 3.845 21 H 0.082 0.918 22 C -0.100 4.100 23 C 0.065 3.935 24 N -0.704 5.704 25 C 0.097 3.903 26 C -0.168 4.168 27 C -0.183 4.183 28 C -0.167 4.167 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.271 0.729 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.339 0.661 46 H 0.075 0.925 47 H 0.036 0.964 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.100 0.900 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.129 19.932 -14.844 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.116 0.884 4 C -0.147 4.147 5 C -0.172 4.172 6 C -0.024 4.024 7 N -0.336 5.336 8 C 0.318 3.682 9 O -0.422 6.422 10 C -0.276 4.276 11 S 0.080 5.920 12 C -0.694 4.694 13 H 0.098 0.902 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.819 3.181 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.182 1.182 20 C 0.052 3.948 21 H 0.100 0.900 22 C -0.138 4.138 23 C -0.064 4.064 24 N -0.334 5.334 25 C -0.032 4.032 26 C -0.186 4.186 27 C -0.220 4.220 28 C -0.205 4.205 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.156 0.844 46 H 0.094 0.906 47 H 0.054 0.946 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.113 0.887 51 H 0.118 0.882 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.314 20.615 -12.831 26.382 hybrid contribution -1.062 -1.584 -1.312 2.314 sum 9.252 19.031 -14.144 25.453 Atomic orbital electron populations 1.21856 0.95818 1.01111 1.01388 1.21558 0.95761 1.00099 0.94152 0.88446 1.21547 1.01212 0.94830 0.97075 1.21963 1.01147 0.96690 0.97411 1.22025 1.01437 0.95330 0.83580 1.48070 1.55942 1.11465 1.18147 1.20022 0.77590 0.87324 0.83298 1.90751 1.57605 1.64081 1.29763 1.23418 1.03602 0.97114 1.03493 1.85535 1.70657 1.16585 1.19198 1.23186 1.41996 0.99340 1.04852 0.90177 1.26118 0.94841 1.03942 0.94237 1.70184 1.37988 1.38946 1.07621 0.84973 0.77845 0.76354 0.78935 1.19269 1.20253 1.18213 1.21354 0.98822 0.79119 0.95532 0.90023 1.21881 1.00395 0.93992 0.97546 1.22043 1.00386 0.94232 0.89737 1.60366 1.21273 1.14951 1.36853 1.21467 1.00468 0.86865 0.94370 1.22303 1.04696 0.92192 0.99459 1.23122 0.92525 1.03103 1.03280 1.23011 0.98227 0.96326 1.02911 0.94215 0.93937 0.91359 0.90151 0.90378 0.92310 0.88511 0.89969 0.89389 0.88357 0.88138 0.92016 0.93363 0.91771 0.90701 0.94040 0.84366 0.90649 0.94590 0.88602 0.88376 0.88706 0.88153 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.18 71.98 0.59 -2.36 16 2 C -0.10 -1.61 2.24 -10.71 -0.02 -1.64 16 3 H 0.10 1.31 6.86 -2.39 -0.02 1.29 16 4 C -0.11 -1.37 5.43 30.62 0.17 -1.21 16 5 C -0.13 -2.00 5.74 30.67 0.18 -1.82 16 6 C 0.10 1.93 6.35 86.36 0.55 2.47 16 7 N -0.60 -16.28 2.41 -795.01 -1.92 -18.20 16 8 C 0.53 20.14 7.55 87.66 0.66 20.80 16 9 O -0.54 -24.79 11.42 -3.02 -0.03 -24.82 16 10 C -0.13 -5.15 4.51 71.24 0.32 -4.83 16 11 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 12 C -0.55 -31.63 9.50 67.95 0.65 -30.99 16 13 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 14 C 0.01 0.77 5.49 84.86 0.47 1.24 16 15 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 16 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 C 0.15 3.54 2.74 44.98 0.12 3.66 16 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 22 C -0.10 -2.85 2.90 30.59 0.09 -2.76 16 23 C 0.07 1.42 5.10 86.30 0.44 1.87 16 24 N -0.70 -16.96 6.50 -513.90 -3.34 -20.30 16 25 C 0.10 1.84 5.97 86.30 0.51 2.36 16 26 C -0.17 -3.15 5.95 -10.79 -0.06 -3.21 16 27 C -0.18 -2.89 10.18 30.60 0.31 -2.58 16 28 C -0.17 -2.43 10.25 30.60 0.31 -2.12 16 29 H 0.04 0.98 5.97 -2.39 -0.01 0.97 16 30 H 0.04 0.99 6.14 -2.38 -0.01 0.97 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.07 6.33 -2.39 -0.02 1.05 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.01 16 36 H 0.08 1.73 5.93 -2.39 -0.01 1.71 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 3.77 7.92 -2.40 -0.02 3.75 16 39 H 0.10 3.81 7.72 -2.39 -0.02 3.79 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.05 1.63 5.53 -2.38 -0.01 1.62 16 42 H 0.06 2.40 6.26 -2.39 -0.01 2.38 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.04 0.77 6.59 -2.39 -0.02 0.76 16 45 H 0.34 8.70 8.73 -89.69 -0.78 7.91 16 46 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.04 0.61 7.87 -2.39 -0.02 0.59 16 48 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.10 1.40 8.03 -2.39 -0.02 1.38 16 50 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -74.27 406.77 1.25 -73.02 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.12 Total: 31.14 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 5.28 Total: -21.12 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -4.97 Total: -94.84 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.03 Total: -24.82 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -74.27 1.25 -73.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691717947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.553 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds