Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.49759 * 2 1 4 4 C 1.53040 * 109.49878 * 120.09393 * 2 1 3 5 5 C 1.53050 * 109.53477 * 58.58813 * 4 2 1 6 6 C 1.53187 * 109.30950 * 61.36409 * 5 4 2 7 7 N 1.46921 * 108.77941 * 305.36258 * 6 5 4 8 8 C 1.34772 * 120.63335 * 233.60856 * 7 6 5 9 9 O 1.21283 * 120.00019 * 185.38377 * 8 7 6 10 10 C 1.50697 * 120.00106 * 5.38825 * 8 7 6 11 11 S 1.81006 * 109.47250 * 179.97438 * 10 8 7 12 12 C 1.76200 * 99.99752 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00351 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99641 * 179.97438 * 12 11 10 15 15 N 1.31630 * 120.00387 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00151 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46646 * 90.00165 * 16 14 12 18 18 H 1.48497 * 109.47343 * 210.00503 * 16 14 12 19 19 H 1.48504 * 109.46720 * 330.00703 * 16 14 12 20 20 C 1.46933 * 118.73610 * 53.61094 * 7 6 5 21 21 H 1.08996 * 109.70022 * 66.25125 * 20 7 6 22 22 C 1.53007 * 109.58459 * 186.60390 * 20 7 6 23 23 C 1.53002 * 109.46831 * 177.77823 * 22 20 7 24 24 N 1.46898 * 109.47187 * 174.92612 * 23 22 20 25 25 C 1.46898 * 111.00060 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.46750 * 180.02562 * 25 24 23 27 27 C 1.53002 * 117.49928 * 243.62070 * 26 25 24 28 28 C 1.53000 * 60.00164 * 252.51548 * 27 26 25 29 29 H 1.09001 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47189 * 300.06477 * 1 2 3 31 31 H 1.09001 * 109.47137 * 60.06353 * 1 2 3 32 32 H 1.08997 * 109.46197 * 178.60183 * 4 2 1 33 33 H 1.08995 * 109.46370 * 298.57041 * 4 2 1 34 34 H 1.08999 * 109.49736 * 181.31448 * 5 4 2 35 35 H 1.09002 * 109.49560 * 301.41693 * 5 4 2 36 36 H 1.09003 * 109.59234 * 65.15475 * 6 5 4 37 37 H 1.08999 * 109.58567 * 185.43237 * 6 5 4 38 38 H 1.09003 * 109.47039 * 299.99326 * 10 8 7 39 39 H 1.09003 * 109.47184 * 59.99830 * 10 8 7 40 40 H 0.96996 * 120.00375 * 179.97438 * 15 14 12 41 41 H 1.08995 * 109.47138 * 57.77771 * 22 20 7 42 42 H 1.09002 * 109.47145 * 297.77557 * 22 20 7 43 43 H 1.08999 * 109.47233 * 54.92487 * 23 22 20 44 44 H 1.09000 * 109.47329 * 294.92709 * 23 22 20 45 45 H 1.00906 * 110.99939 * 303.95877 * 24 23 22 46 46 H 1.08993 * 109.47056 * 300.00019 * 25 24 23 47 47 H 1.09005 * 109.47177 * 60.00212 * 25 24 23 48 48 H 1.08994 * 115.55455 * 29.33254 * 26 25 24 49 49 H 1.09007 * 117.49794 * 0.02562 * 27 26 25 50 50 H 1.08998 * 117.50264 * 145.02252 * 27 26 25 51 51 H 1.08998 * 117.49626 * 252.50797 * 28 27 26 52 52 H 1.09003 * 117.49844 * 107.49114 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7234 1.2482 5 6 1.5030 -2.1562 1.2654 6 6 2.0140 -2.9039 0.0300 7 7 1.6515 -2.1378 -1.1701 8 6 0.9744 -2.7213 -2.1788 9 8 0.7663 -2.1079 -3.2042 10 6 0.4759 -4.1359 -2.0327 11 16 -0.3884 -4.6303 -3.5443 12 6 -0.8497 -6.2742 -3.1092 13 1 -0.5811 -6.6724 -2.1418 14 6 -1.5591 -7.0571 -4.0093 15 7 -1.8869 -6.5717 -5.1881 16 14 -2.0476 -8.8003 -3.5484 17 1 -3.3804 -8.7840 -2.8936 18 1 -2.1079 -9.6377 -4.7732 19 1 -1.0428 -9.3646 -2.6118 20 6 2.0413 -0.7234 -1.2497 21 1 3.1272 -0.6437 -1.2995 22 6 1.4228 -0.0904 -2.4979 23 6 1.7846 1.3954 -2.5488 24 7 1.2947 1.9758 -3.8062 25 6 1.6243 3.4049 -3.8899 26 6 1.0986 3.9730 -5.2097 27 6 2.1276 4.5035 -6.2101 28 6 1.2393 5.4796 -5.4361 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5149 0.8895 31 1 -0.3633 0.5128 -0.8906 32 1 3.1305 -0.7448 1.2351 33 1 1.6987 -0.1964 2.1389 34 1 1.8480 -2.6635 2.1663 35 1 0.4132 -2.1358 1.2534 36 1 3.0979 -3.0043 0.0859 37 1 1.5574 -3.8927 -0.0135 38 1 1.3209 -4.8031 -1.8622 39 1 -0.2095 -4.1941 -1.1871 40 1 -2.3824 -7.1190 -5.8172 41 1 0.3389 -0.1994 -2.4615 42 1 1.8085 -0.5889 -3.3872 43 1 2.8674 1.5078 -2.4943 44 1 1.3230 1.9108 -1.7066 45 1 1.6582 1.4733 -4.6022 46 1 1.1612 3.9339 -3.0570 47 1 2.7060 3.5316 -3.8445 48 1 0.2111 3.4844 -5.6116 49 1 3.1790 4.4475 -5.9281 50 1 1.9172 4.3638 -7.2704 51 1 0.4444 5.9821 -5.9873 52 1 1.7063 6.0661 -4.6449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691717948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = -27.581660 kcal Electronic energy + Delta-G solvation = -28089.172469 eV Core-core repulsion = 24407.767051 eV Total energy + Delta-G solvation = -3681.405418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76562 -38.95334 -38.64793 -36.69525 -34.71214 -34.58480 -33.62660 -30.97909 -30.10889 -27.86153 -27.58500 -26.63625 -25.18857 -23.97777 -23.22339 -22.21019 -21.39356 -21.25907 -19.83879 -19.13306 -17.80191 -17.53358 -16.95460 -16.87444 -16.61969 -16.24783 -16.16064 -15.60647 -15.41708 -15.40129 -15.15516 -14.73357 -14.57546 -14.45163 -14.21740 -13.86524 -13.76842 -13.47390 -13.30077 -13.20252 -13.00787 -12.90191 -12.65277 -12.52627 -12.40443 -12.35037 -12.29396 -12.08476 -11.83600 -11.71809 -11.67522 -11.37683 -11.24090 -11.14442 -11.11433 -10.88673 -10.24489 -9.99494 -9.48312 -9.33279 -8.65444 -8.34561 -6.12089 1.26692 1.41467 1.46179 1.56432 1.66734 2.14073 2.27961 2.84397 2.99245 3.14266 3.29927 3.65181 3.80397 3.87803 3.90886 3.96869 4.02725 4.10776 4.13474 4.22483 4.24997 4.27729 4.34004 4.43236 4.45548 4.53966 4.54370 4.61027 4.65863 4.73428 4.76569 4.78038 4.81917 4.85358 4.89537 5.00775 5.01197 5.09644 5.19317 5.23935 5.27931 5.28930 5.30931 5.38539 5.41091 5.48883 5.55215 5.84111 6.17525 6.19421 6.37940 6.43120 7.06513 7.27956 8.74558 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.002776 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.483325 B =10083.098171 C =12420.271601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.098 0.902 4 C -0.109 4.109 5 C -0.135 4.135 6 C 0.098 3.902 7 N -0.602 5.602 8 C 0.531 3.469 9 O -0.545 6.545 10 C -0.125 4.125 11 S -0.147 6.147 12 C -0.546 4.546 13 H 0.080 0.920 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.997 3.003 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.258 1.258 20 C 0.154 3.846 21 H 0.082 0.918 22 C -0.100 4.100 23 C 0.065 3.935 24 N -0.704 5.704 25 C 0.097 3.903 26 C -0.168 4.168 27 C -0.183 4.183 28 C -0.167 4.167 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.079 0.921 45 H 0.339 0.661 46 H 0.075 0.925 47 H 0.036 0.964 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 19.380 13.797 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.116 0.884 4 C -0.146 4.146 5 C -0.173 4.173 6 C -0.024 4.024 7 N -0.336 5.336 8 C 0.318 3.682 9 O -0.422 6.422 10 C -0.276 4.276 11 S 0.080 5.920 12 C -0.694 4.694 13 H 0.098 0.902 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.819 3.181 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.182 1.182 20 C 0.051 3.949 21 H 0.100 0.900 22 C -0.138 4.138 23 C -0.064 4.064 24 N -0.335 5.335 25 C -0.032 4.032 26 C -0.186 4.186 27 C -0.220 4.220 28 C -0.205 4.205 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.157 0.843 46 H 0.094 0.906 47 H 0.054 0.946 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.113 0.887 51 H 0.118 0.882 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.208 20.375 12.391 26.350 hybrid contribution 0.432 -1.974 0.540 2.091 sum 11.640 18.402 12.931 25.324 Atomic orbital electron populations 1.21859 0.95845 1.01041 1.01498 1.21549 0.95752 1.00099 0.94125 0.88402 1.21548 1.01179 0.94816 0.97098 1.21965 1.01155 0.96714 0.97418 1.22014 1.01444 0.95318 0.83586 1.48063 1.55910 1.11456 1.18160 1.20016 0.77545 0.87335 0.83308 1.90744 1.57550 1.64010 1.29944 1.23417 1.03606 0.97102 1.03506 1.85532 1.70592 1.16506 1.19349 1.23187 1.42000 0.99219 1.04968 0.90174 1.26119 0.94829 1.03977 0.94214 1.70182 1.37824 1.39031 1.07704 0.84974 0.78959 0.76100 0.78079 1.19321 1.20228 1.18176 1.21363 0.98716 0.79125 0.95653 0.90003 1.21883 1.00977 0.93603 0.97312 1.22052 0.97338 0.94687 0.92371 1.60364 1.64876 1.03320 1.04903 1.21466 0.97487 0.87986 0.96227 1.22301 1.01472 0.97333 0.97524 1.23122 0.96724 1.04423 0.97772 1.23010 1.02835 0.91342 1.03292 0.94318 0.91381 0.93837 0.90355 0.90148 0.88497 0.92353 0.89355 0.89972 0.88090 0.88402 0.92015 0.93015 0.92117 0.94490 0.90315 0.84289 0.90648 0.94606 0.88598 0.88380 0.88698 0.88158 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.17 71.98 0.59 -2.53 16 2 C -0.10 -1.64 2.24 -10.72 -0.02 -1.67 16 3 H 0.10 1.34 6.86 -2.38 -0.02 1.32 16 4 C -0.11 -1.39 5.43 30.62 0.17 -1.22 16 5 C -0.13 -2.03 5.74 30.67 0.18 -1.85 16 6 C 0.10 1.93 6.34 86.36 0.55 2.47 16 7 N -0.60 -16.26 2.41 -795.05 -1.92 -18.17 16 8 C 0.53 20.14 7.55 87.66 0.66 20.80 16 9 O -0.54 -24.72 11.41 -3.04 -0.03 -24.75 16 10 C -0.13 -5.16 4.51 71.23 0.32 -4.84 16 11 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 12 C -0.55 -31.65 9.50 67.95 0.65 -31.01 16 13 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 14 C 0.01 0.77 5.49 84.86 0.47 1.23 16 15 N -0.91 -56.65 13.22 21.65 0.29 -56.37 16 16 Si 1.00 44.10 29.55 68.60 2.03 46.12 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 20 C 0.15 3.52 2.74 44.97 0.12 3.65 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 22 C -0.10 -2.84 2.90 30.60 0.09 -2.75 16 23 C 0.06 1.42 5.09 86.30 0.44 1.86 16 24 N -0.70 -16.96 6.50 -513.89 -3.34 -20.30 16 25 C 0.10 1.84 5.97 86.30 0.51 2.36 16 26 C -0.17 -3.14 5.95 -10.79 -0.06 -3.21 16 27 C -0.18 -2.90 10.18 30.60 0.31 -2.59 16 28 C -0.17 -2.43 10.25 30.60 0.31 -2.12 16 29 H 0.04 0.99 5.97 -2.39 -0.01 0.98 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.04 1.10 6.12 -2.39 -0.01 1.09 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.08 6.33 -2.39 -0.02 1.07 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.73 5.94 -2.39 -0.01 1.71 16 38 H 0.10 3.82 7.72 -2.39 -0.02 3.80 16 39 H 0.10 3.77 7.91 -2.39 -0.02 3.75 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.05 1.84 5.51 -2.39 -0.01 1.83 16 42 H 0.06 2.15 6.27 -2.39 -0.01 2.14 16 43 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.08 1.56 6.57 -2.39 -0.02 1.54 16 45 H 0.34 8.73 8.73 -89.69 -0.78 7.94 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.04 0.61 7.88 -2.38 -0.02 0.59 16 48 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.10 1.41 8.03 -2.38 -0.02 1.39 16 50 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -74.25 406.72 1.25 -73.00 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.12 Total: 31.36 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 5.28 Total: -21.41 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -4.97 Total: -94.84 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.03 Total: -24.75 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -74.25 1.25 -73.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691717948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.415 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds