Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 120.00067 * 2 1 4 4 O 1.21286 * 119.99947 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00030 * 359.97438 * 3 2 1 6 6 S 1.81003 * 109.47053 * 180.02562 * 5 3 2 7 7 C 1.76197 * 99.99978 * 180.02562 * 6 5 3 8 8 H 1.08004 * 120.00145 * 359.97438 * 7 6 5 9 9 C 1.38796 * 120.00125 * 179.97438 * 7 6 5 10 10 N 1.31627 * 120.00115 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00149 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47348 * 89.99782 * 11 9 7 13 13 H 1.48500 * 109.46818 * 209.99985 * 11 9 7 14 14 H 1.48503 * 109.47032 * 329.99778 * 11 9 7 15 15 C 1.46500 * 119.99857 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.64307 * 178.30424 * 15 2 1 17 17 C 1.54596 * 110.72339 * 301.45206 * 15 2 1 18 18 C 1.53998 * 105.14205 * 140.49449 * 17 15 2 19 19 N 1.47898 * 107.22187 * 1.12689 * 18 17 15 20 20 C 1.46898 * 111.00150 * 214.25236 * 19 18 17 21 21 C 1.52997 * 109.47156 * 294.33587 * 20 19 18 22 22 C 1.52995 * 109.47283 * 295.62175 * 21 20 19 23 23 C 1.52997 * 109.47283 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.47162 * 59.99988 * 23 22 21 25 25 C 1.53002 * 109.47194 * 299.99938 * 24 23 22 26 26 C 1.52997 * 109.47016 * 59.99972 * 25 24 23 27 27 C 1.48816 * 105.68225 * 334.90544 * 19 18 17 28 28 H 1.09003 * 109.46900 * 270.00307 * 1 2 3 29 29 H 1.08997 * 109.47031 * 30.00434 * 1 2 3 30 30 H 1.08998 * 109.46818 * 150.00405 * 1 2 3 31 31 H 1.09001 * 109.47309 * 300.00074 * 5 3 2 32 32 H 1.09000 * 109.46835 * 60.00290 * 5 3 2 33 33 H 0.97003 * 120.00353 * 180.02562 * 10 9 7 34 34 H 1.09003 * 110.31229 * 21.57794 * 17 15 2 35 35 H 1.08998 * 110.39705 * 259.45768 * 17 15 2 36 36 H 1.08997 * 109.91548 * 120.58051 * 18 17 15 37 37 H 1.08996 * 109.91618 * 241.68073 * 18 17 15 38 38 H 1.09004 * 109.46631 * 54.33243 * 20 19 18 39 39 H 1.09000 * 109.47456 * 174.32973 * 20 19 18 40 40 H 1.09000 * 109.47215 * 55.62356 * 21 20 19 41 41 H 1.09000 * 109.47143 * 300.00226 * 22 21 20 42 42 H 1.09000 * 109.46806 * 59.99964 * 22 21 20 43 43 H 1.09000 * 109.47215 * 300.00182 * 23 22 21 44 44 H 1.09002 * 109.47098 * 180.02562 * 23 22 21 45 45 H 1.08995 * 109.47165 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.46898 * 59.99999 * 24 23 22 47 47 H 1.09000 * 109.47248 * 299.99846 * 25 24 23 48 48 H 1.09000 * 109.46969 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47473 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.47215 * 59.99854 * 26 25 24 51 51 H 1.08999 * 110.51908 * 280.54664 * 27 19 18 52 52 H 1.08999 * 110.84286 * 157.56376 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5617 3.8480 -0.0012 7 6 1.4417 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9284 6.5080 -0.0009 10 7 3.2267 6.7246 -0.0003 11 14 0.7409 7.9501 -0.0014 12 1 0.4256 8.3322 1.3985 13 1 1.3626 9.1029 -0.7012 14 1 -0.5094 7.5614 -0.7020 15 6 2.1975 -1.2687 0.0006 16 1 3.2726 -1.0918 -0.0297 17 6 1.8176 -2.1192 1.2344 18 6 1.7399 -3.5673 0.7164 19 7 2.0850 -3.5372 -0.7214 20 6 1.3216 -4.5465 -1.4674 21 6 1.7444 -5.9447 -1.0125 22 6 3.2121 -6.1774 -1.3764 23 6 3.6351 -7.5754 -0.9209 24 6 2.7647 -8.6236 -1.6169 25 6 1.2969 -8.3910 -1.2529 26 6 0.8739 -6.9930 -1.7084 27 6 1.7553 -2.1622 -1.1855 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7591 2.5299 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 3.5669 7.6330 0.0002 34 1 0.8504 -1.8054 1.6270 35 1 2.5836 -2.0337 2.0052 36 1 2.4507 -4.1933 1.2559 37 1 0.7297 -3.9549 0.8477 38 1 0.2568 -4.4094 -1.2785 39 1 1.5185 -4.4362 -2.5337 40 1 1.6200 -6.0286 0.0672 41 1 3.3364 -6.0935 -2.4560 42 1 3.8322 -5.4308 -0.8801 43 1 3.5108 -7.6589 0.1588 44 1 4.6809 -7.7410 -1.1798 45 1 3.0658 -9.6196 -1.2921 46 1 2.8890 -8.5402 -2.6966 47 1 1.1727 -8.4745 -0.1733 48 1 0.6769 -9.1376 -1.7492 49 1 -0.1718 -6.8274 -1.4496 50 1 0.9982 -6.9096 -2.7881 51 1 0.6840 -2.0650 -1.3617 52 1 2.3162 -1.9118 -2.0859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698557276.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = -70.594608 kcal Electronic energy + Delta-G solvation = -27436.706945 eV Core-core repulsion = 23753.436346 eV Total energy + Delta-G solvation = -3683.270600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.32479 -40.10044 -38.80823 -36.35325 -34.58674 -33.69808 -31.60179 -31.32290 -30.58567 -29.09857 -27.79302 -27.60703 -25.88246 -23.43982 -22.77582 -22.44107 -21.36952 -20.56663 -20.11628 -19.57816 -18.36663 -17.39613 -16.88269 -16.80494 -16.64463 -16.36471 -16.16333 -15.61798 -15.16250 -15.04873 -14.85608 -14.76331 -14.55826 -14.37161 -14.21365 -14.00444 -13.82989 -13.52388 -13.20563 -13.13584 -12.99978 -12.89555 -12.82486 -12.69413 -12.60753 -12.56614 -12.45731 -12.24717 -11.94200 -11.74683 -11.68606 -11.60751 -11.25556 -11.14339 -10.92803 -10.87180 -10.83486 -10.26940 -9.70997 -9.35928 -8.67920 -8.34561 -6.13273 1.24380 1.42606 1.45119 1.53790 1.55983 2.02546 2.27209 2.99570 3.02822 3.25336 3.53069 3.58616 3.79077 3.84230 3.92857 3.96650 4.05644 4.11682 4.21409 4.24305 4.29427 4.35036 4.42046 4.45956 4.50049 4.56373 4.59840 4.64618 4.68091 4.71227 4.74380 4.82212 4.84976 4.87618 4.89915 4.97933 5.03616 5.10296 5.14973 5.23980 5.31291 5.32412 5.36919 5.41512 5.47309 5.50599 5.57606 5.65344 5.88866 6.09374 6.19447 6.24241 7.06472 7.11683 8.74686 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037426 B = 0.001755 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.966189 B =15954.647901 C =16238.209497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.532 3.468 4 O -0.566 6.566 5 C -0.122 4.122 6 S -0.154 6.154 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.257 1.257 15 C 0.135 3.865 16 H 0.078 0.922 17 C -0.136 4.136 18 C 0.047 3.953 19 N -0.522 5.522 20 C 0.054 3.946 21 C -0.075 4.075 22 C -0.103 4.103 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.112 4.112 27 C 0.036 3.964 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.061 0.939 51 H 0.068 0.932 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -31.593 -1.603 33.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.320 3.680 4 O -0.444 6.444 5 C -0.273 4.273 6 S 0.073 5.927 7 C -0.694 4.694 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.181 1.181 15 C 0.030 3.970 16 H 0.097 0.903 17 C -0.174 4.174 18 C -0.081 4.081 19 N -0.246 5.246 20 C -0.074 4.074 21 C -0.094 4.094 22 C -0.141 4.141 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.092 4.092 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.386 -31.625 -1.697 32.762 hybrid contribution -2.173 1.351 0.103 2.561 sum -10.560 -30.273 -1.594 32.102 Atomic orbital electron populations 1.22082 0.77161 1.04668 1.03455 1.47760 1.08255 1.04215 1.73313 1.20193 0.87283 0.85489 0.75051 1.90682 1.15800 1.87414 1.50514 1.23368 1.02666 0.94784 1.06455 1.85625 1.12705 0.97346 1.97035 1.23196 0.94634 0.92598 1.58926 0.89825 1.26139 0.97596 1.01704 0.93710 1.70188 1.14153 1.22470 1.47970 0.84945 0.77886 0.76281 0.78804 1.19291 1.20340 1.18096 1.21877 0.97053 0.82133 0.95927 0.90325 1.22736 1.02984 0.94604 0.97122 1.22786 1.00752 0.95646 0.88879 1.64717 1.54241 1.02451 1.03202 1.22368 0.95163 0.91419 0.98404 1.21089 0.95401 0.92697 1.00223 1.21417 0.95819 0.96372 1.00492 1.21545 0.99137 0.94897 1.00180 1.21539 0.95215 0.98601 1.00336 1.21503 0.96074 0.96636 1.01202 1.21539 0.98986 0.94220 1.00217 1.23429 1.00223 0.88364 0.97206 0.90879 0.90212 0.88643 0.87271 0.87381 0.92002 0.89542 0.91285 0.90006 0.91953 0.93710 0.90970 0.91287 0.92957 0.92382 0.92293 0.92413 0.91807 0.92282 0.92065 0.91436 0.91509 0.92038 0.91408 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.15 127.77 1.17 2.36 16 2 N -0.60 -16.25 2.89 -815.86 -2.36 -18.60 16 3 C 0.53 20.46 7.69 87.66 0.67 21.14 16 4 O -0.57 -27.29 15.23 -3.05 -0.05 -27.34 16 5 C -0.12 -4.90 4.71 71.24 0.34 -4.56 16 6 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 7 C -0.55 -31.23 9.50 67.95 0.65 -30.59 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 C 0.01 0.76 5.49 84.86 0.47 1.22 16 10 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 11 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 15 C 0.13 3.33 3.46 46.20 0.16 3.49 16 16 H 0.08 2.56 6.99 -2.39 -0.02 2.55 16 17 C -0.14 -2.54 6.55 31.47 0.21 -2.33 16 18 C 0.05 0.71 5.52 86.45 0.48 1.19 16 19 N -0.52 -8.96 4.73 -882.26 -4.17 -13.14 16 20 C 0.05 0.73 4.15 86.30 0.36 1.09 16 21 C -0.08 -0.90 2.14 -10.80 -0.02 -0.93 16 22 C -0.10 -1.47 5.09 30.59 0.16 -1.32 16 23 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 24 C -0.12 -1.25 5.92 30.59 0.18 -1.06 16 25 C -0.12 -1.09 5.92 30.59 0.18 -0.91 16 26 C -0.11 -1.10 5.21 30.59 0.16 -0.94 16 27 C 0.04 0.71 6.11 86.59 0.53 1.24 16 28 H 0.07 1.09 7.90 -2.39 -0.02 1.07 16 29 H 0.08 1.41 6.44 -2.39 -0.02 1.40 16 30 H 0.10 1.17 6.08 -2.39 -0.01 1.16 16 31 H 0.11 3.94 7.40 -2.40 -0.02 3.93 16 32 H 0.11 3.92 8.11 -2.39 -0.02 3.90 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.09 1.39 6.99 -2.39 -0.02 1.38 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.23 8.11 -2.39 -0.02 1.21 16 37 H 0.06 0.75 7.64 -2.39 -0.02 0.73 16 38 H 0.04 0.52 7.94 -2.38 -0.02 0.50 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 0.86 7.22 -2.39 -0.02 0.84 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 1.03 7.73 -2.39 -0.02 1.01 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.07 1.08 5.97 -2.39 -0.01 1.07 16 52 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.68 408.39 1.30 -73.38 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.87 Total: 18.21 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.86 Total: -12.22 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -6.24 Total: -87.74 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -74.68 1.30 -73.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557276.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.781 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds