Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00272 * 2 1 4 4 C 1.53001 * 109.47062 * 124.99783 * 3 2 1 5 5 C 1.52998 * 109.46979 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47303 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00313 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.46828 * 35.00794 * 7 6 5 9 9 C 1.52997 * 109.47515 * 275.00230 * 7 6 5 10 10 C 1.53006 * 109.47224 * 154.99921 * 7 6 5 11 11 H 1.08996 * 109.49339 * 60.00143 * 10 7 6 12 12 C 1.53039 * 109.49875 * 180.02562 * 10 7 6 13 13 C 1.53035 * 109.53695 * 181.31965 * 12 10 7 14 14 C 1.53191 * 109.31251 * 298.63172 * 13 12 10 15 15 N 1.46928 * 108.77441 * 54.63907 * 14 13 12 16 16 C 1.34777 * 120.63540 * 126.39150 * 15 14 13 17 17 O 1.21275 * 120.00325 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.99379 * 359.97438 * 16 15 14 19 19 S 1.81007 * 109.46728 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99900 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00085 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00300 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99826 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46883 * 90.00290 * 24 22 20 26 26 H 1.48502 * 109.47445 * 210.00007 * 24 22 20 27 27 H 1.48497 * 109.47283 * 330.00081 * 24 22 20 28 28 C 1.46931 * 118.76330 * 306.41062 * 15 14 13 29 29 H 1.08001 * 120.00342 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00224 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00034 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46756 * 5.00160 * 3 2 1 33 33 H 1.09003 * 109.47237 * 245.00025 * 3 2 1 34 34 H 1.08993 * 109.46943 * 60.00112 * 4 3 2 35 35 H 1.09003 * 109.47292 * 300.00209 * 4 3 2 36 36 H 1.09003 * 109.47574 * 60.00050 * 5 4 3 37 37 H 1.09003 * 109.46991 * 300.00040 * 5 4 3 38 38 H 1.00906 * 110.99722 * 56.04008 * 6 5 4 39 39 H 1.09002 * 109.47153 * 59.99762 * 9 7 6 40 40 H 1.09001 * 109.46832 * 299.99953 * 9 7 6 41 41 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 42 42 H 1.09001 * 109.45915 * 301.33546 * 12 10 7 43 43 H 1.08995 * 109.45917 * 61.29745 * 12 10 7 44 44 H 1.08996 * 109.50375 * 58.58557 * 13 12 10 45 45 H 1.09006 * 109.49931 * 178.65063 * 13 12 10 46 46 H 1.09007 * 109.59004 * 174.42197 * 14 13 12 47 47 H 1.09001 * 109.59029 * 294.70927 * 14 13 12 48 48 H 1.08998 * 109.47254 * 300.00016 * 18 16 15 49 49 H 1.08997 * 109.47509 * 60.00703 * 18 16 15 50 50 H 0.97000 * 119.99871 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.56284 * 293.78545 * 28 15 14 52 52 H 1.09001 * 109.61713 * 173.35949 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7996 2.6582 1.1820 6 7 4.7320 2.6854 2.3169 7 6 5.4857 3.9458 2.3490 8 1 4.8473 4.7597 2.0054 9 6 6.7064 3.8337 1.4335 10 6 5.9460 4.2285 3.7806 11 1 6.5844 3.4148 4.1247 12 6 6.7309 5.5419 3.8148 13 6 7.2198 5.8088 5.2402 14 6 6.0123 5.9427 6.1733 15 7 5.1745 4.7433 6.0375 16 6 4.8257 4.0229 7.1218 17 8 4.1333 3.0351 6.9966 18 6 5.2962 4.4448 8.4900 19 16 4.6664 3.2850 9.7287 20 6 5.3485 3.9968 11.1891 21 1 5.9515 4.8905 11.1233 22 6 5.1110 3.4092 12.4238 23 7 5.6201 3.9413 13.5149 24 14 4.0674 1.8641 12.5375 25 1 4.9390 0.6680 12.4143 26 1 3.3682 1.8341 13.8473 27 1 3.0655 1.8616 11.4415 28 6 4.7241 4.3436 4.6973 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7399 0.5065 1.0921 35 1 2.4772 1.2355 2.1131 36 1 3.0945 3.4846 1.2718 37 1 4.3574 2.7561 0.2506 38 1 5.3552 1.8922 2.2919 39 1 6.3784 3.6323 0.4137 40 1 7.3447 3.0197 1.7773 41 1 7.2654 4.7691 1.4570 42 1 7.5874 5.4706 3.1445 43 1 6.0853 6.3591 3.4933 44 1 7.8455 4.9800 5.5715 45 1 7.7990 6.7321 5.2592 46 1 6.3552 6.0340 7.2040 47 1 5.4357 6.8265 5.9004 48 1 6.3859 4.4473 8.5147 49 1 4.9255 5.4462 8.7089 50 1 5.4537 3.5308 14.3778 51 1 4.0407 5.0954 4.3025 52 1 4.2176 3.3800 4.7537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698926955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -59.150829 kcal Electronic energy + Delta-G solvation = -27278.703887 eV Core-core repulsion = 23595.929527 eV Total energy + Delta-G solvation = -3682.774360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25203 -39.34340 -37.81096 -36.46131 -34.67632 -34.30010 -32.78860 -31.87539 -30.51204 -29.32498 -27.85967 -26.49371 -25.60579 -24.34816 -22.57957 -22.40592 -21.02874 -20.63676 -20.35904 -19.43625 -18.17043 -17.20407 -17.03184 -16.77159 -16.64439 -16.19653 -15.95546 -15.76139 -15.52669 -15.39200 -14.97664 -14.92695 -14.56595 -14.40220 -14.22525 -13.95701 -13.88543 -13.52808 -13.43307 -13.36339 -13.28411 -13.01857 -12.76077 -12.59213 -12.49293 -12.41959 -12.30270 -11.92365 -11.86204 -11.77902 -11.74007 -11.58205 -11.47066 -11.19864 -11.17361 -10.84130 -10.51278 -10.20131 -9.63933 -9.21760 -9.00418 -8.51763 -6.22650 0.97801 1.30782 1.40384 1.46436 1.54468 1.56546 2.12582 2.25183 2.69085 2.86245 3.16310 3.58169 3.75025 3.87395 3.94258 4.05348 4.07139 4.10757 4.18056 4.23164 4.29980 4.38323 4.39598 4.44365 4.48106 4.51831 4.58809 4.65840 4.66569 4.71448 4.79945 4.90244 4.93513 4.96767 4.99818 5.00767 5.06318 5.10062 5.18231 5.24480 5.29508 5.36830 5.42704 5.49914 5.63231 5.70732 5.75862 5.89209 6.10782 6.20703 6.33150 6.50495 6.93459 7.14148 8.60505 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.002439 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.274069 B =11475.035886 C =13823.261932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.088 4.088 4 C -0.110 4.110 5 C 0.067 3.933 6 N -0.702 5.702 7 C 0.097 3.903 8 H 0.084 0.916 9 C -0.176 4.176 10 C -0.080 4.080 11 H 0.055 0.945 12 C -0.111 4.111 13 C -0.130 4.130 14 C 0.095 3.905 15 N -0.606 5.606 16 C 0.530 3.470 17 O -0.564 6.564 18 C -0.104 4.104 19 S -0.178 6.178 20 C -0.527 4.527 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.239 1.239 28 C 0.129 3.871 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.342 0.658 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.277 0.723 51 H 0.069 0.931 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 2.649 -32.861 32.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.181 4.181 3 C -0.126 4.126 4 C -0.148 4.148 5 C -0.062 4.062 6 N -0.332 5.332 7 C -0.013 4.013 8 H 0.102 0.898 9 C -0.234 4.234 10 C -0.100 4.100 11 H 0.073 0.927 12 C -0.148 4.148 13 C -0.168 4.168 14 C -0.027 4.027 15 N -0.340 5.340 16 C 0.318 3.682 17 O -0.443 6.443 18 C -0.255 4.255 19 S 0.048 5.952 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.159 4.159 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.182 1.182 27 H -0.163 1.163 28 C 0.007 3.993 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.982 1.440 -32.409 32.456 hybrid contribution 1.103 0.282 0.377 1.200 sum 0.121 1.722 -32.032 32.078 Atomic orbital electron populations 1.24016 0.96196 1.02366 1.01388 1.23105 0.96294 0.98995 0.99720 1.20694 0.98050 0.95219 0.98637 1.21446 0.97922 0.97303 0.98086 1.21929 0.94800 0.97914 0.91561 1.60507 1.22737 1.04665 1.45313 1.21474 0.94115 0.92331 0.93397 0.89784 1.22463 0.98364 1.03196 0.99416 1.21421 0.95709 0.98467 0.94425 0.92652 1.21637 1.00441 0.96263 0.96503 1.21903 0.96510 1.03327 0.95077 1.22073 0.92352 0.86565 1.01726 1.48156 1.51667 1.27875 1.06252 1.20026 0.79580 0.82670 0.85959 1.90670 1.39440 1.27828 1.86354 1.23270 1.05005 1.03391 0.93825 1.84744 1.69931 1.39915 1.00566 1.22435 1.37140 1.15274 0.92616 0.91915 1.25544 0.96015 1.00105 0.94271 1.70013 1.44753 1.41599 0.98965 0.85880 0.80757 0.79882 0.79932 1.18700 1.18186 1.16261 1.21543 0.96737 1.01143 0.79888 0.88007 0.88329 0.87152 0.91449 0.90051 0.91851 0.93054 0.91424 0.94078 0.83955 0.92255 0.92777 0.90452 0.89673 0.90370 0.92681 0.88108 0.89905 0.89225 0.87342 0.87237 0.91350 0.91231 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.78 14.32 67.78 0.97 -1.81 16 2 C -0.16 -2.25 9.52 25.65 0.24 -2.01 16 3 C -0.09 -1.08 5.66 29.85 0.17 -0.91 16 4 C -0.11 -1.57 5.46 30.59 0.17 -1.41 16 5 C 0.07 0.88 5.48 86.30 0.47 1.35 16 6 N -0.70 -11.23 5.61 -491.58 -2.76 -13.99 16 7 C 0.10 1.29 2.17 44.92 0.10 1.39 16 8 H 0.08 1.04 7.80 -2.39 -0.02 1.02 16 9 C -0.18 -1.72 8.81 71.98 0.63 -1.09 16 10 C -0.08 -1.37 2.11 -10.71 -0.02 -1.39 16 11 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 12 C -0.11 -1.35 4.85 30.62 0.15 -1.20 16 13 C -0.13 -1.90 6.08 30.67 0.19 -1.71 16 14 C 0.09 1.85 6.34 86.36 0.55 2.40 16 15 N -0.61 -16.70 2.97 -818.87 -2.43 -19.14 16 16 C 0.53 20.14 7.72 87.66 0.68 20.82 16 17 O -0.56 -26.17 15.27 -3.02 -0.05 -26.21 16 18 C -0.10 -4.18 4.50 71.24 0.32 -3.86 16 19 S -0.18 -9.36 18.55 -56.49 -1.05 -10.41 16 20 C -0.53 -31.27 10.04 67.95 0.68 -30.58 16 21 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 22 C 0.05 2.75 5.50 84.86 0.47 3.21 16 23 N -0.92 -56.22 13.97 21.65 0.30 -55.92 16 24 Si 0.91 45.90 27.74 68.60 1.90 47.80 16 25 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 28 C 0.13 3.11 5.47 86.36 0.47 3.58 16 29 H 0.10 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.10 1.26 7.84 -2.91 -0.02 1.24 16 31 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.07 0.82 7.79 -2.38 -0.02 0.81 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.94 8.06 -2.39 -0.02 0.92 16 37 H 0.04 0.44 7.44 -2.39 -0.02 0.42 16 38 H 0.34 5.36 8.47 -89.69 -0.76 4.60 16 39 H 0.06 0.53 7.45 -2.39 -0.02 0.51 16 40 H 0.05 0.60 8.13 -2.39 -0.02 0.58 16 41 H 0.08 0.60 6.40 -2.38 -0.02 0.59 16 42 H 0.08 0.79 6.36 -2.39 -0.02 0.77 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.08 1.73 5.93 -2.38 -0.01 1.72 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 48 H 0.11 4.05 7.69 -2.40 -0.02 4.03 16 49 H 0.11 4.07 7.94 -2.40 -0.02 4.05 16 50 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 51 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 52 H 0.07 2.29 6.66 -2.39 -0.02 2.27 16 Total: -1.00 -73.92 418.80 2.23 -71.69 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.08 Total: 19.39 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 6.23 Total: -13.22 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -4.89 Total: -89.04 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.05 Total: -10.41 kcal Total: -73.92 2.23 -71.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698926955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.537 kcal (2) G-P(sol) polarization free energy of solvation -73.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds