Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.52996 * 109.47478 * 124.99802 * 3 2 1 5 5 C 1.52996 * 109.47223 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47329 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99882 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47206 * 324.99652 * 7 6 5 9 9 C 1.52998 * 109.47395 * 85.00325 * 7 6 5 10 10 C 1.53003 * 109.46928 * 205.00259 * 7 6 5 11 11 H 1.08998 * 109.49993 * 60.06457 * 10 7 6 12 12 C 1.53037 * 109.49698 * 180.16165 * 10 7 6 13 13 C 1.53041 * 109.53587 * 181.31435 * 12 10 7 14 14 C 1.53189 * 109.31743 * 298.63389 * 13 12 10 15 15 N 1.46928 * 108.77155 * 54.63202 * 14 13 12 16 16 C 1.34781 * 120.62603 * 126.37021 * 15 14 13 17 17 O 1.21282 * 119.99476 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99998 * 0.02893 * 16 15 14 19 19 S 1.80999 * 109.46852 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99828 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00214 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99929 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00021 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99928 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46659 * 90.00238 * 24 22 20 26 26 H 1.48502 * 109.47176 * 209.99878 * 24 22 20 27 27 H 1.48498 * 109.46979 * 330.00352 * 24 22 20 28 28 C 1.46925 * 118.74389 * 306.39574 * 15 14 13 29 29 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 31 31 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46714 * 244.99836 * 3 2 1 33 33 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 34 34 H 1.09002 * 109.47176 * 299.99751 * 4 3 2 35 35 H 1.09001 * 109.46898 * 60.00143 * 4 3 2 36 36 H 1.09001 * 109.47516 * 300.00535 * 5 4 3 37 37 H 1.09000 * 109.46975 * 59.99759 * 5 4 3 38 38 H 1.00902 * 110.99733 * 56.05083 * 6 5 4 39 39 H 1.09000 * 109.47046 * 59.99796 * 9 7 6 40 40 H 1.09000 * 109.47010 * 179.97438 * 9 7 6 41 41 H 1.09001 * 109.46639 * 299.99685 * 9 7 6 42 42 H 1.09002 * 109.46037 * 301.33684 * 12 10 7 43 43 H 1.08999 * 109.45873 * 61.29590 * 12 10 7 44 44 H 1.09008 * 109.49624 * 178.68207 * 13 12 10 45 45 H 1.09003 * 109.52762 * 58.60669 * 13 12 10 46 46 H 1.09001 * 109.58652 * 294.85559 * 14 13 12 47 47 H 1.08997 * 109.59035 * 174.42274 * 14 13 12 48 48 H 1.09003 * 109.46825 * 299.98902 * 18 16 15 49 49 H 1.08994 * 109.47215 * 59.99849 * 18 16 15 50 50 H 0.97001 * 120.00000 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.58076 * 293.82163 * 28 15 14 52 52 H 1.08994 * 109.70684 * 173.46332 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8005 2.6579 1.1812 6 7 4.7329 2.6851 2.3160 7 6 5.4866 3.9456 2.3480 8 1 5.6848 4.2764 1.3285 9 6 4.6679 5.0109 3.0799 10 6 6.8122 3.7287 3.0806 11 1 7.3964 2.9706 2.5589 12 6 7.5961 5.0425 3.1178 13 6 8.9366 4.8188 3.8215 14 6 8.6830 4.3662 5.2629 15 7 7.8086 3.1856 5.2408 16 6 8.1689 2.0524 5.8753 17 8 7.4385 1.0845 5.8492 18 6 9.4791 1.9881 6.6170 19 16 9.6734 0.3478 7.3572 20 6 11.2409 0.5477 8.1367 21 1 11.7659 1.4884 8.0605 22 6 11.8005 -0.5036 8.8496 23 7 11.1605 -1.6500 8.9429 24 14 13.4627 -0.2920 9.6754 25 1 13.2676 0.2147 11.0576 26 1 14.1625 -1.6009 9.7222 27 1 14.2791 0.6786 8.9030 28 6 6.5344 3.2636 4.5135 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 0.0044 31 1 1.8500 -0.9353 0.0004 32 1 2.6213 1.4025 -0.9314 33 1 1.3586 2.1317 0.0895 34 1 2.4772 1.2358 2.1130 35 1 3.7400 0.5066 1.0920 36 1 4.3583 2.7549 0.2497 37 1 3.0959 3.4847 1.2704 38 1 5.3557 1.8915 2.2914 39 1 4.4697 4.6801 4.0994 40 1 5.2274 5.9461 3.1040 41 1 3.7235 5.1654 2.5579 42 1 7.7738 5.3883 2.0995 43 1 7.0216 5.7928 3.6609 44 1 9.5044 5.7493 3.8270 45 1 9.5018 4.0510 3.2932 46 1 8.1984 5.1693 5.8182 47 1 9.6302 4.1106 5.7377 48 1 10.2990 2.1732 5.9230 49 1 9.4897 2.7441 7.4020 50 1 11.5518 -2.3848 9.4408 51 1 5.8747 3.9769 5.0077 52 1 6.0617 2.2817 4.4938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698926974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -57.134755 kcal Electronic energy + Delta-G solvation = -27216.246350 eV Core-core repulsion = 23533.559413 eV Total energy + Delta-G solvation = -3682.686937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.31575 -39.39347 -37.77088 -36.42938 -34.58973 -34.30578 -32.90179 -31.63360 -30.51085 -29.23644 -27.69274 -26.47901 -25.97595 -24.60329 -22.61948 -22.16363 -20.90579 -20.61455 -19.97936 -19.45564 -18.15549 -17.20179 -16.96945 -16.87938 -16.56778 -16.31060 -16.14672 -15.71473 -15.59946 -15.32700 -15.00129 -14.71836 -14.52373 -14.33823 -14.25178 -14.03671 -13.72600 -13.51253 -13.35461 -13.17426 -13.12824 -12.89422 -12.83368 -12.63358 -12.58470 -12.45816 -12.13953 -11.85902 -11.80289 -11.71953 -11.66763 -11.58968 -11.43940 -11.24576 -11.14465 -10.80568 -10.26072 -10.20538 -9.60844 -9.32326 -8.67678 -8.34611 -6.13210 1.25846 1.40289 1.42444 1.46114 1.56652 1.59517 2.13899 2.27461 2.99311 3.14184 3.25995 3.65586 3.72975 3.80237 3.90991 4.02232 4.06396 4.10660 4.17122 4.25324 4.29958 4.37714 4.41176 4.43507 4.50682 4.52941 4.57712 4.62886 4.67773 4.72249 4.78479 4.86533 4.91903 4.94394 5.03020 5.05181 5.07213 5.10465 5.14105 5.24660 5.25925 5.37530 5.39933 5.41276 5.54674 5.62117 5.76040 5.88943 6.18644 6.19533 6.33875 6.39772 7.06250 7.17614 8.74658 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.002135 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.681190 B =13111.844476 C =14944.104184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.087 4.087 4 C -0.110 4.110 5 C 0.065 3.935 6 N -0.701 5.701 7 C 0.098 3.902 8 H 0.056 0.944 9 C -0.141 4.141 10 C -0.094 4.094 11 H 0.056 0.944 12 C -0.108 4.108 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.607 5.607 16 C 0.530 3.470 17 O -0.567 6.567 18 C -0.122 4.122 19 S -0.153 6.153 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.124 3.876 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.337 0.663 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.054 0.946 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.271 0.729 51 H 0.079 0.921 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.302 18.617 -19.391 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.184 4.184 3 C -0.125 4.125 4 C -0.148 4.148 5 C -0.063 4.063 6 N -0.333 5.333 7 C -0.012 4.012 8 H 0.074 0.926 9 C -0.199 4.199 10 C -0.114 4.114 11 H 0.075 0.925 12 C -0.146 4.146 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.341 5.341 16 C 0.317 3.683 17 O -0.446 6.446 18 C -0.273 4.273 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 C 0.002 3.998 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.073 0.927 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.097 0.903 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.866 17.266 -18.926 29.619 hybrid contribution 2.182 0.151 0.001 2.187 sum -12.684 17.417 -18.925 28.677 Atomic orbital electron populations 1.24011 0.95962 1.02482 1.01056 1.23089 0.96434 0.98863 1.00025 1.20683 0.98013 0.95370 0.98407 1.21455 0.97882 0.97025 0.98465 1.21982 0.95147 0.98172 0.91036 1.60558 1.22727 1.04516 1.45449 1.21477 0.91228 0.90478 0.98029 0.92578 1.21906 0.99791 0.97720 1.00466 1.21620 0.96296 0.98875 0.94609 0.92539 1.21607 0.95212 0.95784 1.01993 1.21911 0.98168 1.02607 0.94109 1.22080 0.94633 0.86868 0.99043 1.48174 1.21768 1.12385 1.51798 1.20144 0.86853 0.82588 0.78681 1.90673 1.54642 1.37102 1.62181 1.23362 0.98102 1.03208 1.02668 1.85603 1.27343 1.13365 1.66254 1.23193 1.05155 1.02641 1.38340 0.89909 1.26153 1.02876 0.93878 0.96317 1.70190 1.40270 1.03845 1.40478 0.84939 0.76386 0.78077 0.78484 1.19264 1.20294 1.18098 1.21643 0.84049 1.02406 0.91705 0.88027 0.87940 0.87631 0.90466 0.90881 0.92373 0.92658 0.94768 0.90602 0.84444 0.92913 0.90523 0.92660 0.90013 0.89732 0.87845 0.92737 0.89192 0.89682 0.87680 0.87609 0.91999 0.90264 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 14.32 67.79 0.97 -1.67 16 2 C -0.17 -2.41 9.52 25.65 0.24 -2.17 16 3 C -0.09 -1.13 5.66 29.85 0.17 -0.96 16 4 C -0.11 -1.73 5.46 30.59 0.17 -1.57 16 5 C 0.07 0.96 5.48 86.30 0.47 1.44 16 6 N -0.70 -12.75 5.69 -491.57 -2.80 -15.55 16 7 C 0.10 1.47 2.45 44.92 0.11 1.58 16 8 H 0.06 0.75 7.80 -2.39 -0.02 0.73 16 9 C -0.14 -1.89 8.72 71.98 0.63 -1.26 16 10 C -0.09 -1.67 2.02 -10.72 -0.02 -1.69 16 11 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 12 C -0.11 -1.35 4.77 30.62 0.15 -1.21 16 13 C -0.13 -1.87 6.08 30.67 0.19 -1.68 16 14 C 0.10 1.86 6.34 86.36 0.55 2.41 16 15 N -0.61 -17.16 2.97 -818.91 -2.43 -19.59 16 16 C 0.53 20.99 7.72 87.66 0.68 21.67 16 17 O -0.57 -27.79 15.28 -3.04 -0.05 -27.84 16 18 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 19 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 20 C -0.55 -31.54 9.50 67.96 0.65 -30.89 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 24 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 28 C 0.12 3.06 5.25 86.36 0.45 3.52 16 29 H 0.10 1.20 8.06 -2.91 -0.02 1.18 16 30 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 31 H 0.11 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.85 7.79 -2.39 -0.02 0.83 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.03 0.46 8.06 -2.39 -0.02 0.44 16 37 H 0.08 1.04 7.43 -2.39 -0.02 1.03 16 38 H 0.34 6.99 8.21 -89.69 -0.74 6.26 16 39 H 0.05 0.87 6.32 -2.39 -0.02 0.86 16 40 H 0.08 0.75 6.46 -2.39 -0.02 0.74 16 41 H 0.05 0.71 7.45 -2.39 -0.02 0.69 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.86 6.50 -2.39 -0.02 0.85 16 44 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.74 5.93 -2.39 -0.01 1.72 16 48 H 0.11 3.96 7.69 -2.39 -0.02 3.94 16 49 H 0.11 3.98 7.94 -2.40 -0.02 3.96 16 50 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.08 1.77 6.18 -2.39 -0.01 1.76 16 52 H 0.07 2.14 6.55 -2.39 -0.02 2.13 16 Total: -1.00 -75.96 417.38 2.20 -73.76 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.15 Total: 25.62 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 6.18 Total: -16.06 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -4.94 Total: -91.48 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.05 Total: -27.84 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -75.96 2.20 -73.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698926974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.622 kcal (2) G-P(sol) polarization free energy of solvation -75.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds